Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0856 Capsella rubella HOM05D006020 ORTHO05D007665 9.8e-297 1022.7 516 100.0
AT5G48830 Arabidopsis thaliana HOM05D006020 ORTHO05D007665 1.3e-256 889.4 516 88.0
AL8G22000 Arabidopsis lyrata HOM05D006020 ORTHO05D007665 1.1e-255 886.3 516 88.8
CARHR182910 Cardamine hirsuta HOM05D006020 ORTHO05D007665 2.2e-248 862.1 517 85.5
Thhalv10004024m.g Eutrema salsugineum HOM05D006020 ORTHO05D007665 2.9e-248 861.7 516 86.2
Sp2g19230 Schrenkiella parvula HOM05D006020 ORTHO05D007665 3.7e-235 818.1 519 83.4
A06p38870 Brassica napus HOM05D006020 ORTHO05D007665 6.5e-232 807.4 520 82.1
C07p39450 Brassica napus HOM05D006020 ORTHO05D007665 3.0e-229 798.5 520 81.7
BcaC06g30754 Brassica carinata HOM05D006020 ORTHO05D007665 1.1e-228 796.6 520 81.5
BolC7t44464H Brassica oleracea HOM05D006020 ORTHO05D007665 1.1e-228 796.6 520 81.5
BraA06t26802Z Brassica rapa HOM05D006020 ORTHO05D007665 1.2e-225 786.6 530 79.2
BcaC03g17676 Brassica carinata HOM05D006020 ORTHO05D007665 3.6e-222 775.0 514 79.4
C02p56820 Brassica napus HOM05D006020 ORTHO05D007665 3.6e-222 775.0 514 79.4
BolC2t11751H Brassica oleracea HOM05D006020 ORTHO05D007665 4.7e-222 774.6 515 79.8
BcaB07g30043 Brassica carinata HOM05D006020 ORTHO05D007665 5.7e-220 767.7 524 79.4
A02p37730 Brassica napus HOM05D006020 ORTHO05D007665 9.7e-220 766.9 516 79.1
BraA02t08755Z Brassica rapa HOM05D006020 ORTHO05D007665 1.6e-217 759.6 516 78.7
Aa31sc866G30 Aethionema arabicum HOM05D006020 ORTHO05D007665 1.2e-212 743.4 537 74.5
THA.LOC104818953 Tarenaya hassleriana HOM05D006020 ORTHO05D007665 2.3e-197 692.6 521 71.6
Duzib133G0822 Durio zibethinus HOM05D006020 ORTHO05D007665 1.8e-133 480.3 517 52.0
Thecc.01G227300 Theobroma cacao HOM05D006020 ORTHO05D007665 1.3e-131 474.2 516 51.4
Dinv04657 Davidia involucrata HOM05D006020 ORTHO05D007665 5.5e-130 468.8 495 51.7
Dinv19209 Davidia involucrata HOM05D006020 ORTHO05D007665 1.6e-129 467.2 513 50.1
Potri.002G241200 Populus trichocarpa HOM05D006020 ORTHO05D007665 1.6e-129 467.2 450 56.0
Sabra02G0183800 Salix brachista HOM05D006020 ORTHO05D007665 3.6e-129 466.1 505 52.5
Gorai.007G153400 Gossypium raimondii HOM05D006020 ORTHO05D007665 1.8e-128 463.8 520 49.4
Gohir.D11G143100 Gossypium hirsutum HOM05D006020 ORTHO05D007665 5.1e-128 462.2 529 48.8
Gohir.A11G136800 Gossypium hirsutum HOM05D006020 ORTHO05D007665 6.7e-128 461.8 518 49.4
GSVIVG01028621001 Vitis vinifera HOM05D006020 ORTHO05D007665 1.1e-127 461.1 514 50.8
CiPaw.04G106000 Carya illinoinensis HOM05D006020 ORTHO05D007665 5.7e-127 458.8 523 50.1
Atru.chr5.2019 Acer truncatum HOM05D006020 ORTHO05D007665 2.8e-126 456.4 517 49.3
Ciclev10019729m.g Citrus clementina HOM05D006020 ORTHO05D007665 1.7e-123 447.2 461 54.0
FvH4_2g19230 Fragaria vesca HOM05D006020 ORTHO05D007665 1.7e-123 447.2 515 49.7
FAN27G2268 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.7e-123 447.2 522 49.4
Manes.12G041000 Manihot esculenta HOM05D006020 ORTHO05D007665 8.5e-123 444.9 509 48.7
Prupe.8G204200 Prunus persica HOM05D006020 ORTHO05D007665 8.5e-123 444.9 512 48.6
COL.COLO4_09005 Corchorus olitorius HOM05D006020 ORTHO05D007665 5.5e-122 442.2 567 46.2
RcHm_v2.0_Chr6g0285011 Rosa chinensis HOM05D006020 ORTHO05D007665 1.2e-121 441.0 524 49.0
TWI75G0236 Tripterygium wilfordii HOM05D006020 ORTHO05D007665 4.7e-121 439.1 517 48.4
MD05G1177200 Malus domestica HOM05D006020 ORTHO05D007665 1.4e-120 437.6 514 47.9
FAN24G1617 Fragaria x ananassa HOM05D006020 ORTHO05D007665 3.9e-120 436.0 483 49.9
Lj1C84T12 Lonicera japonica HOM05D006020 ORTHO05D007665 6.7e-120 435.3 485 50.1
Manes.13G045000 Manihot esculenta HOM05D006020 ORTHO05D007665 1.3e-118 431.0 518 47.1
Actinidia37585 Actinidia chinensis HOM05D006020 ORTHO05D007665 2.8e-118 429.9 519 47.6
TAR365G0939 Trochodendron aralioides HOM05D006020 ORTHO05D007665 4.8e-118 429.1 516 47.5
FAN15G0009 Fragaria x ananassa HOM05D006020 ORTHO05D007665 7.7e-116 421.8 575 44.7
CsaV3_7G025840 Cucumis sativus L. HOM05D006020 ORTHO05D007665 1.7e-115 420.6 521 47.2
Sc05g0002440 Simmondsia chinensis HOM05D006020 ORTHO05D007665 6.5e-115 418.7 453 49.2
Migut.N02265 Erythranthe guttata HOM05D006020 ORTHO05D007665 9.4e-114 414.8 480 50.2
Sed0023867 Sechium edule HOM05D006020 ORTHO05D007665 9.4e-114 414.8 525 46.7
Rhsim13G0044300 Rhododendron simsii HOM05D006020 ORTHO05D006855 1.2e-113 414.5 506 45.7
MELO3C012759.2 Cucumis melo HOM05D006020 ORTHO05D007665 8.0e-113 411.8 526 46.4
QL04p091507 Quercus lobata HOM05D006020 ORTHO05D007665 1.8e-112 410.6 584 43.5
Glyma.18G171900 Glycine max HOM05D006020 ORTHO05D007665 8.8e-112 408.3 521 46.4
Lj1g0020866 Lotus japonicus HOM05D006020 ORTHO05D007665 8.8e-112 408.3 498 47.6
Oeu042519.1 Olea europaea HOM05D006020 ORTHO05D007665 8.8e-112 408.3 489 47.6
CANSAT01G2399 Cannabis sativa HOM05D006020 ORTHO05D007665 2.0e-111 407.1 508 47.4
MSTRG.17550 Avicennia marina HOM05D006020 ORTHO05D007665 4.8e-110 402.5 504 47.6
Lalb_Chr19g0125561 Lupinus albus HOM05D006020 ORTHO05D007665 2.4e-109 400.2 518 44.8
PGR044G0586 Punica granatum HOM05D006020 ORTHO05D007665 1.6e-108 397.5 472 48.1
VMungo1383G1607 Vigna mungo HOM05D006020 ORTHO05D007665 2.6e-108 396.7 513 45.0
Solyc09g061420.3 Solanum lycopersicum HOM05D006020 ORTHO05D007665 3.5e-108 396.4 481 48.2
Eucgr.K03608 Eucalyptus grandis HOM05D006020 ORTHO05D007665 5.9e-108 395.6 450 49.1
Hund05517 Selenicereus undatus HOM05D006020 ORTHO05D007665 1.5e-106 391.0 482 46.9
MBI10_g05712_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 3.2e-106 389.8 454 48.0
Nitab4.5_0000045g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 7.2e-106 388.7 486 46.5
TPR.G15290 Trifolium pratense HOM05D006020 ORTHO05D007665 7.2e-106 388.7 518 44.4
Nn1g07811 Nelumbo nucifera HOM05D006020 ORTHO05D007665 1.2e-105 387.9 514 45.9
arahy.Tifrunner.gnm1.ann1.PQ4NGV Arachis hypogaea HOM05D006020 ORTHO05D007665 1.6e-105 387.5 512 44.5
Aqoxy5G00068 Aquilegia oxysepala HOM05D006020 ORTHO05D007665 2.1e-105 387.1 519 43.4
Nitab4.5_0002085g0020 Nicotiana tabacum HOM05D006020 ORTHO05D007665 8.0e-105 385.2 504 44.6
Phvul.008G124000 Phaseolus vulgaris HOM05D006020 ORTHO05D007665 1.0e-104 384.8 451 48.6
Nitab4.5_0001872g0010 Nicotiana tabacum HOM05D006020 ORTHO05D007665 1.4e-104 384.4 466 47.2
Nitab4.5_0004922g0030 Nicotiana tabacum HOM05D006020 ORTHO05D007665 3.3e-103 379.8 443 47.0
vmacro02750 Vaccinium macrocarpon HOM05D006020 ORTHO05D007665 4.4e-103 379.4 555 41.8
Medtr7g058760 Medicago truncatula HOM05D006020 ORTHO05D007665 9.7e-103 378.3 520 43.1
Haze_24783 Corylus avellana HOM05D006020 ORTHO05D007665 1.1e-101 374.8 403 51.4
Cc01_g17190 Coffea canephora HOM05D006020 ORTHO05D007665 1.8e-101 374.0 447 47.4
ECA236G4144 Erigeron canadensis HOM05D006020 ORTHO05D007665 2.4e-101 373.6 447 46.3
ATR0736G004 Amborella trichopoda HOM05D006020 ORTHO05D007665 5.3e-101 372.5 504 43.7
AUR62031841 Chenopodium quinoa HOM05D006020 ORTHO05D007665 7.0e-101 372.1 460 46.1
CAN.G771.64 Capsicum annuum HOM05D006020 ORTHO05D007665 7.7e-100 368.6 448 45.3
ClCG09G009100 Citrullus lanatus HOM05D006020 ORTHO05D007665 2.9e-99 366.7 525 43.0
EL10Ac7g17782 Beta vulgaris HOM05D006020 ORTHO05D007665 5.0e-99 365.9 509 43.6
PSO674G0123 Papaver somniferum HOM05D006020 ORTHO05D007665 2.5e-98 363.6 523 43.0
AUR62008869 Chenopodium quinoa HOM05D006020 ORTHO05D007665 6.1e-97 359.0 501 42.1
Sopen09g024240 Solanum pennellii HOM05D006020 ORTHO05D007665 8.0e-97 358.6 569 40.9
HanXRQChr10g0287321 Helianthus annuus HOM05D006020 ORTHO05D007665 1.4e-96 357.8 444 45.9
SalBow2G1017 Salvia bowleyana HOM05D006020 ORTHO05D007665 2.6e-95 353.6 524 43.3
TAR362G0890 Trochodendron aralioides HOM05D006020 ORTHO05D007665 1.1e-93 348.2 355 52.4
Lsat_1_v5_gn_8_90041 Lactuca sativa HOM05D006066 ORTHO05D007720 1.9e-90 337.4 446 46.4
CDE06G1596 Ceratophyllum demersum HOM05D006020 ORTHO05D007665 3.3e-90 336.7 376 48.4
Glyma.08G355500 Glycine max HOM05D006020 ORTHO05D007665 9.2e-85 318.5 466 42.1
Ah.08g213940 Amaranthus hybridus HOM05D006020 ORTHO05D007665 3.5e-84 316.6 378 45.8
Zm00001eb241910 Zea mays HOM05D006020 ORTHO05D007665 3.5e-84 316.6 456 42.8
PSO170G4604 Papaver somniferum HOM05D006020 ORTHO05D007665 1.3e-83 314.7 455 42.9
HPP92_017884 Vanilla planifolia HOM05D006020 ORTHO05D007665 1.6e-76 291.2 451 39.2
MBI19_g27116_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 8.0e-73 278.9 310 51.0
DCAR_018556 Daucus carota HOM05D006066 ORTHO05D007720 2.9e-70 270.4 378 43.4
Actinidia30087 Actinidia chinensis HOM05D006020 ORTHO05D007665 4.9e-70 269.6 207 68.6
SEGI_37377 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 1.9e-66 257.7 454 35.2
Peaxi162Scf00107g00133 Petunia axillaris HOM05D006020 ORTHO05D007665 1.2e-60 238.4 478 36.0
arahy.Tifrunner.gnm1.ann1.3CP2KK Arachis hypogaea HOM05D001055 ORTHO05D000867 5.8e-55 219.5 191 62.3
SGA_v2.0_scaffold42G16144 Striga asiatica HOM05D006020 ORTHO05D007665 3.4e-47 193.7 316 40.5
AagrBONN_evm.TU.Sc2ySwM_344.2296 Anthoceros agrestis HOM05D006020 ORTHO05D007665 1.3e-46 191.8 464 33.0
Mapoly0173s0025 Marchantia polymorpha HOM05D006020 ORTHO05D007665 3.8e-46 190.3 447 30.0
MBI01_g07173_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 6.4e-46 189.5 287 40.8
HPP92_017879 Vanilla planifolia HOM05D006020 ORTHO05D007665 9.3e-45 185.7 287 37.6
Pp3c24_4300 Physcomitrium patens HOM05D006020 ORTHO05D007665 1.0e-43 182.2 469 30.5
Psat3g144000 Pisum sativum HOM05D006020 ORTHO05D007665 1.3e-43 181.8 144 66.7
SMO115G0313 Selaginella moellendorffii HOM05D006020 ORTHO05D007665 7.3e-42 176.0 444 31.5
MBI09_g17752_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 6.9e-40 169.5 309 36.2
SEGI_14686 Sequoiadendron giganteum HOM05D006020 ORTHO05D007665 1.4e-37 161.8 213 43.2
FAN15G1634 Fragaria x ananassa HOM05D006020 ORTHO05D007665 1.9e-34 151.4 258 38.0
unitig_85.g27279 Utricularia gibba HOM05D006020 ORTHO05D007665 9.6e-34 149.1 143 53.8
BcaB07g30044 Brassica carinata HOM05D006020 ORTHO05D007665 2.8e-33 147.5 142 62.0
arahy.Tifrunner.gnm1.ann1.PG1H4F Arachis hypogaea HOM05D006020 ORTHO05D007665 2.2e-30 137.9 284 32.4
MBI16_g14987_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 2.5e-29 134.4 127 59.8
Cpa.g.sc8.167 Carica papaya HOM05D006020 ORTHO05D007665 1.1e-26 125.6 120 56.7
Psat3g144040 Pisum sativum HOM05D006020 ORTHO05D007665 6.2e-25 119.8 268 31.0
MBI12_g18650_MAGBIO Magnolia biondii HOM05D006020 ORTHO05D007665 1.1e-16 92.4 131 38.2
PRCOL_00001532 Prasinoderma coloniale HOM05D006020 ORTHO05D007665 1.1e-13 82.4 195 29.2
CBR_g31943 Chara braunii HOM05D006020 ORTHO05D007665 1.9e-13 81.6 140 34.3
Cpa.g.sc8.168 Carica papaya HOM05D006020 ORTHO05D007665 4.6e-12 77.0 117 41.9
Os02g0515000 Oryza sativa ssp. japonica HOM05D006020 ORTHO05D007665 6.7e-11 73.2 179 29.6
MCO16G349 Micromonas commoda HOM05D006020 ORTHO05D007665 1.0e-06 59.3 67 43.3


User provided reference genes

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