Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0836 Capsella rubella HOM05D003856 ORTHO05D004547 2.9e-85 318.5 163 100.0
AL7G31210 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 1.6e-30 136.7 212 47.2
A01p13750 Brassica napus HOM05D003856 ORTHO05D004547 2.0e-30 136.3 212 46.7
C01p16660 Brassica napus HOM05D003856 ORTHO05D004547 2.0e-30 136.3 212 46.7
BolC1t01613H Brassica oleracea HOM05D003856 ORTHO05D004547 2.0e-30 136.3 212 46.7
BraA01t01320Z Brassica rapa HOM05D003856 ORTHO05D004547 2.0e-30 136.3 212 46.7
BcaC09g51102 Brassica carinata HOM05D003856 ORTHO05D004547 2.7e-30 136.0 213 46.5
BcaB03g11729 Brassica carinata HOM05D003856 ORTHO05D004547 5.9e-30 134.8 212 46.2
BcaC01g00774 Brassica carinata HOM05D003856 ORTHO05D004547 5.9e-30 134.8 212 46.2
A08p15680 Brassica napus HOM05D003856 ORTHO05D004547 5.9e-30 134.8 212 46.2
C03p84130 Brassica napus HOM05D003856 ORTHO05D004547 5.9e-30 134.8 212 46.2
BolC3t20692H Brassica oleracea HOM05D003856 ORTHO05D004547 5.9e-30 134.8 212 46.2
BraA08t33548Z Brassica rapa HOM05D003856 ORTHO05D004547 5.9e-30 134.8 212 46.2
AL6G47550 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 7.7e-30 134.4 215 46.5
Carub.0006s3186 Capsella rubella HOM05D003856 ORTHO05D004547 7.7e-30 134.4 215 46.5
Thhalv10026090m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 7.7e-30 134.4 212 46.7
Sp7g20520 Schrenkiella parvula HOM05D003856 ORTHO05D004547 1.0e-29 134.0 212 46.2
AT4G12590 Arabidopsis thaliana HOM05D003856 ORTHO05D004547 2.3e-29 132.9 212 46.2
BcaC04g21245 Brassica carinata HOM05D003856 ORTHO05D004547 2.3e-29 132.9 215 45.6
A09p26760 Brassica napus HOM05D003856 ORTHO05D004547 2.9e-29 132.5 215 45.6
C09p33910 Brassica napus HOM05D003856 ORTHO05D004547 2.9e-29 132.5 215 45.6
BolC9t56227H Brassica oleracea HOM05D003856 ORTHO05D004547 2.9e-29 132.5 215 45.6
BraA09t38248Z Brassica rapa HOM05D003856 ORTHO05D004547 2.9e-29 132.5 215 45.6
CARHR253580 Cardamine hirsuta HOM05D003856 ORTHO05D004547 5.0e-29 131.7 215 46.0
Thhalv10028913m.g Eutrema salsugineum HOM05D003856 ORTHO05D004547 1.5e-28 130.2 215 45.1
BcaB01g01755 Brassica carinata HOM05D003856 ORTHO05D004547 1.9e-28 129.8 215 45.1
CARHR229320 Cardamine hirsuta HOM05D003856 ORTHO05D004547 1.9e-28 129.8 216 45.4
VMungo0540G0895 Vigna mungo HOM05D003856 ORTHO05D004547 7.2e-28 127.9 215 44.7
Lalb_Chr02g0149201 Lupinus albus HOM05D003856 ORTHO05D004547 1.2e-27 127.1 215 44.7
Glyma.18G075400 Glycine max HOM05D003856 ORTHO05D004547 1.6e-27 126.7 215 44.2
Phvul.006G059000 Phaseolus vulgaris HOM05D003856 ORTHO05D004547 1.6e-27 126.7 215 44.2
Sp6g04920 Schrenkiella parvula HOM05D003856 ORTHO05D004547 1.6e-27 126.7 215 44.7
Lj5g0025471 Lotus japonicus HOM05D003856 ORTHO05D004547 2.1e-27 126.3 212 43.4
THA.LOC104813601 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 2.8e-27 125.9 212 43.9
Actinidia02310 Actinidia chinensis HOM05D003856 ORTHO05D004547 3.6e-27 125.6 212 42.9
Lalb_Chr06g0168331 Lupinus albus HOM05D003856 ORTHO05D004547 4.7e-27 125.2 212 43.4
Glyma.08G331200 Glycine max HOM05D003856 ORTHO05D004547 8.0e-27 124.4 215 43.7
Actinidia26855 Actinidia chinensis HOM05D003856 ORTHO05D004547 1.4e-26 123.6 212 42.0
arahy.Tifrunner.gnm1.ann1.B5Z1I8 Arachis hypogaea HOM05D003856 ORTHO05D004547 1.4e-26 123.6 215 43.7
arahy.Tifrunner.gnm1.ann1.ZZ9Q5Y Arachis hypogaea HOM05D003856 ORTHO05D004547 1.4e-26 123.6 215 43.7
Aa31LG9G10060 Aethionema arabicum HOM05D003856 ORTHO05D004547 1.8e-26 123.2 212 42.9
Dinv07408 Davidia involucrata HOM05D003856 ORTHO05D004547 2.3e-26 122.9 212 41.5
arahy.Tifrunner.gnm1.ann1.D1JSNC Arachis hypogaea HOM05D003856 ORTHO05D004547 3.0e-26 122.5 215 43.3
arahy.Tifrunner.gnm1.ann1.GCV40F Arachis hypogaea HOM05D003856 ORTHO05D004547 3.0e-26 122.5 215 43.3
Ciclev10016420m.g Citrus clementina HOM05D003856 ORTHO05D004547 4.0e-26 122.1 212 42.9
Nitab4.5_0004406g0030 Nicotiana tabacum HOM05D003856 ORTHO05D004547 5.2e-26 121.7 215 43.3
Potri.016G013100 Populus trichocarpa HOM05D003856 ORTHO05D004547 5.2e-26 121.7 215 42.3
THA.LOC104812995 Tarenaya hassleriana HOM05D003856 ORTHO05D004547 5.2e-26 121.7 212 42.9
Cpa.g.sc75.112 Carica papaya HOM05D003856 ORTHO05D004547 6.8e-26 121.3 212 41.5
Sabra16G0002300 Salix brachista HOM05D003856 ORTHO05D004547 6.8e-26 121.3 215 41.9
Rhsim02G0099500 Rhododendron simsii HOM05D003856 ORTHO05D004547 8.9e-26 120.9 218 42.7
Duzib192G0794 Durio zibethinus HOM05D003856 ORTHO05D004547 1.2e-25 120.6 212 41.5
Duzib235G1167 Durio zibethinus HOM05D003856 ORTHO05D004547 1.2e-25 120.6 212 41.5
Hma1.2p1_0657F.1_g197110 Hydrangea macrophylla HOM05D003856 ORTHO05D004547 1.2e-25 120.6 212 41.0
Nn1g03306 Nelumbo nucifera HOM05D003856 ORTHO05D004547 1.5e-25 120.2 212 42.5
Thecc.06G233900 Theobroma cacao HOM05D003856 ORTHO05D004547 1.5e-25 120.2 212 41.5
CiPaw.09G102800 Carya illinoinensis HOM05D003856 ORTHO05D004547 2.0e-25 119.8 212 41.5
MELO3C021687.2 Cucumis melo HOM05D003856 ORTHO05D004547 2.0e-25 119.8 175 46.3
DCAR_004889 Daucus carota HOM05D003856 ORTHO05D004547 2.0e-25 119.8 216 42.6
Gohir.A10G009100 Gossypium hirsutum HOM05D003856 ORTHO05D004547 2.0e-25 119.8 215 41.9
Aqoxy1G04060 Aquilegia oxysepala HOM05D003856 ORTHO05D004547 2.6e-25 119.4 215 42.8
Gohir.D10G008800 Gossypium hirsutum HOM05D003856 ORTHO05D004547 3.4e-25 119.0 212 42.0
Gorai.011G009600 Gossypium raimondii HOM05D003856 ORTHO05D004547 3.4e-25 119.0 212 42.0
Manes.08G069500 Manihot esculenta HOM05D003856 ORTHO05D004547 3.4e-25 119.0 212 41.0
PSO541G3298 Papaver somniferum HOM05D003856 ORTHO05D004547 3.4e-25 119.0 216 42.6
TAR627G0499 Trochodendron aralioides HOM05D003856 ORTHO05D004547 3.4e-25 119.0 215 43.3
TAR627G1166 Trochodendron aralioides HOM05D003856 ORTHO05D004547 3.4e-25 119.0 215 43.3
Ah.14g087610 Amaranthus hybridus HOM05D003856 ORTHO05D004547 4.4e-25 118.6 212 41.5
CSS0032798 Camellia sinensis var. sinensis HOM05D003856 ORTHO05D004547 4.4e-25 118.6 212 42.0
CDE04G3203 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 4.4e-25 118.6 212 42.5
CDE06G2351 Ceratophyllum demersum HOM05D003856 ORTHO05D004547 4.4e-25 118.6 212 42.0
Gohir.D10G008700 Gossypium hirsutum HOM05D003856 ORTHO05D004547 4.4e-25 118.6 212 41.5
Gorai.011G009500 Gossypium raimondii HOM05D003856 ORTHO05D004547 4.4e-25 118.6 212 41.5
TAR626G0303 Trochodendron aralioides HOM05D003856 ORTHO05D004547 4.4e-25 118.6 212 42.9
EL10Ac8g20193 Beta vulgaris HOM05D003856 ORTHO05D004547 5.7e-25 118.2 212 42.0
Lj2A261T38 Lonicera japonica HOM05D003856 ORTHO05D004547 5.7e-25 118.2 212 41.0
Nn1g07399 Nelumbo nucifera HOM05D003856 ORTHO05D004547 5.7e-25 118.2 212 42.5
Nitab4.5_0001735g0170 Nicotiana tabacum HOM05D003856 ORTHO05D004547 5.7e-25 118.2 210 42.4
Cfa010272 Carpinus fangiana HOM05D003856 ORTHO05D004547 7.5e-25 117.9 212 40.6
Migut.M01400 Erythranthe guttata HOM05D003856 ORTHO05D004547 7.5e-25 117.9 215 41.9
FAN21G0260 Fragaria x ananassa HOM05D003856 ORTHO05D004547 7.5e-25 117.9 217 39.6
Gohir.A10G009000 Gossypium hirsutum HOM05D003856 ORTHO05D004547 7.5e-25 117.9 212 41.5
Hund06997 Selenicereus undatus HOM05D003856 ORTHO05D004547 7.5e-25 117.9 212 42.0
Haze_06930 Corylus avellana HOM05D003856 ORTHO05D004547 9.8e-25 117.5 212 40.1
PSO675G7111 Papaver somniferum HOM05D003856 ORTHO05D004547 9.8e-25 117.5 216 42.1
QL05p069616 Quercus lobata HOM05D003856 ORTHO05D004547 9.8e-25 117.5 212 42.0
CANSAT56G3590 Cannabis sativa HOM05D003856 ORTHO05D004547 1.3e-24 117.1 215 41.9
CiPaw.10G078300 Carya illinoinensis HOM05D003856 ORTHO05D004547 1.3e-24 117.1 212 40.6
Ca_10008_v3 Cicer arietinum L. HOM05D003856 ORTHO05D004547 1.3e-24 117.1 166 47.6
ClCG01G010160 Citrullus lanatus HOM05D003856 ORTHO05D004547 1.3e-24 117.1 166 47.0
CsaV3_1G017260 Cucumis sativus L. HOM05D003856 ORTHO05D004547 1.3e-24 117.1 166 47.0
Eucgr.D01412 Eucalyptus grandis HOM05D003856 ORTHO05D004547 1.3e-24 117.1 212 40.6
Prupe.4G009900 Prunus persica HOM05D003856 ORTHO05D004547 1.3e-24 117.1 212 41.0
MBI16_g31714_MAGBIO Magnolia biondii HOM05D003856 ORTHO05D004547 1.7e-24 116.7 212 41.0
Sed0028227 Sechium edule HOM05D003856 ORTHO05D004547 1.7e-24 116.7 212 40.6
ECA248G1273 Erigeron canadensis HOM05D003856 ORTHO05D004547 2.2e-24 116.3 215 41.9
HanXRQChr10g0285161 Helianthus annuus HOM05D003856 ORTHO05D004547 2.2e-24 116.3 212 40.6
Lsat_1_v5_gn_4_61900 Lactuca sativa HOM05D003856 ORTHO05D004547 2.2e-24 116.3 215 41.9
SalBow8G1854 Salvia bowleyana HOM05D003856 ORTHO05D004547 2.2e-24 116.3 215 40.9
SGA_v2.0_scaffold4G01871 Striga asiatica HOM05D003856 ORTHO05D004547 2.2e-24 116.3 215 41.4
FvH4_3g00930 Fragaria vesca HOM05D003856 ORTHO05D004547 2.8e-24 115.9 212 40.6
FAN25G1896 Fragaria x ananassa HOM05D003856 ORTHO05D004547 2.8e-24 115.9 212 40.6
HanXRQChr01g0006771 Helianthus annuus HOM05D003856 ORTHO05D004547 2.8e-24 115.9 215 41.9
CAN.G449.18 Capsicum annuum HOM05D003856 ORTHO05D004547 3.7e-24 115.5 216 41.7
MD05G1358200 Malus domestica HOM05D003856 ORTHO05D004547 3.7e-24 115.5 215 40.9
MD10G1332300 Malus domestica HOM05D003856 ORTHO05D004547 3.7e-24 115.5 215 40.9
Sc17g0007760 Simmondsia chinensis HOM05D003856 ORTHO05D004547 3.7e-24 115.5 212 41.0
RcHm_v2.0_Chr5g0001451 Rosa chinensis HOM05D003856 ORTHO05D004547 4.9e-24 115.2 212 41.0
TWI38G2230 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 6.3e-24 114.8 216 42.1
SalBow1G0666 Salvia bowleyana HOM05D003856 ORTHO05D004547 8.3e-24 114.4 212 40.1
Solyc05g054100.3 Solanum lycopersicum HOM05D003856 ORTHO05D004547 8.3e-24 114.4 216 41.2
Sopen05g032590 Solanum pennellii HOM05D003856 ORTHO05D004547 8.3e-24 114.4 216 41.2
PGSC0003DMG400008443 Solanum tuberosum HOM05D003856 ORTHO05D004547 8.3e-24 114.4 216 41.2
Sabra06G0009100 Salix brachista HOM05D003856 ORTHO05D004547 1.1e-23 114.0 224 38.8
Sed0026067 Sechium edule HOM05D003856 ORTHO05D004547 1.1e-23 114.0 166 46.4
Potri.006G011500 Populus trichocarpa HOM05D003856 ORTHO05D004547 1.4e-23 113.6 169 47.3
Lsat_1_v5_gn_0_29081 Lactuca sativa HOM05D003856 ORTHO05D004547 2.4e-23 112.8 215 40.5
PGR004G0563 Punica granatum HOM05D003856 ORTHO05D004547 3.2e-23 112.5 166 45.8
AUR62021855 Chenopodium quinoa HOM05D003856 ORTHO05D004547 5.4e-23 111.7 166 46.4
Cc09_g00840 Coffea canephora HOM05D003856 ORTHO05D004547 5.4e-23 111.7 213 40.8
Atru.chr1.2436 Acer truncatum HOM05D003856 ORTHO05D004547 7.0e-23 111.3 216 41.2
Atru.chr1.2438 Acer truncatum HOM05D003856 ORTHO05D004547 7.0e-23 111.3 216 41.2
DCAR_027821 Daucus carota HOM05D003856 ORTHO05D004547 9.2e-23 110.9 170 46.5
unitig_61.g26092 Utricularia gibba HOM05D003856 ORTHO05D004547 9.2e-23 110.9 136 53.7
Zm00001eb102120 Zea mays HOM05D003856 ORTHO05D004547 9.2e-23 110.9 128 57.8
TPR.G32278 Trifolium pratense HOM05D003856 ORTHO05D004547 1.6e-22 110.2 166 45.8
AUR62012797 Chenopodium quinoa HOM05D003856 ORTHO05D004547 2.7e-22 109.4 166 45.8
Os09g0497400 Oryza sativa ssp. japonica HOM05D003856 ORTHO05D004547 2.7e-22 109.4 125 56.0
Psat6g143120 Pisum sativum HOM05D003856 ORTHO05D004547 2.7e-22 109.4 166 45.2
AagrBONN_evm.TU.Sc2ySwM_362.305 Anthoceros agrestis HOM05D003856 ORTHO05D004547 4.5e-22 108.6 122 53.3
MSTRG.7166 Avicennia marina HOM05D003856 ORTHO05D004547 1.0e-21 107.5 215 39.5
Medtr1g079890 Medicago truncatula HOM05D003856 ORTHO05D004547 1.0e-21 107.5 169 45.6
Lj1C1240G8 Lonicera japonica HOM05D003856 ORTHO05D004547 1.3e-21 107.1 123 55.3
SEGI_40422 Sequoiadendron giganteum HOM05D003856 ORTHO05D004547 1.7e-21 106.7 122 53.3
ATR0712G091 Amborella trichopoda HOM05D003856 ORTHO05D004547 5.0e-21 105.1 212 38.2
Pp3c7_950 Physcomitrium patens HOM05D003856 ORTHO05D004547 5.0e-21 105.1 134 50.7
Mapoly0029s0061 Marchantia polymorpha HOM05D003856 ORTHO05D004547 3.3e-20 102.4 122 50.8
Pp3c11_24600 Physcomitrium patens HOM05D003856 ORTHO05D004547 4.3e-20 102.1 125 52.8
TWI63G1684 Tripterygium wilfordii HOM05D003856 ORTHO05D004547 1.6e-19 100.1 260 35.4
SMO239G0047 Selaginella moellendorffii HOM05D003856 ORTHO05D004547 2.8e-19 99.4 125 50.4
Haze_06937 Corylus avellana HOM05D003856 ORTHO05D004547 1.0e-18 97.4 231 35.9
SHI24455 Sapria himalayana HOM05D003856 ORTHO05D004547 2.3e-18 96.3 193 38.3
AL649U10020 Arabidopsis lyrata HOM05D003856 ORTHO05D004547 5.2e-18 95.1 71 80.3
Peaxi162Scf00990g00017 Petunia axillaris HOM05D003856 ORTHO05D004547 8.9e-18 94.4 197 37.6
HPP92_000415 Vanilla planifolia HOM05D003856 ORTHO05D004547 8.9e-18 94.4 217 36.9
vmacro15762 Vaccinium macrocarpon HOM05D003856 ORTHO05D004547 1.2e-17 94.0 215 37.7
Oeu009395.1 Olea europaea HOM05D003856 ORTHO05D004547 2.6e-17 92.8 271 33.2
Carub.0007s1888 Capsella rubella HOM05D003856 ORTHO05D004547 4.4e-17 92.0 187 41.2
Lalb_Chr21g0311241 Lupinus albus HOM05D003856 ORTHO05D004547 2.2e-16 89.7 62 77.4
COL.COLO4_31890 Corchorus olitorius HOM05D003856 ORTHO05D004547 2.3e-13 79.7 57 78.9
HPP92_000455 Vanilla planifolia HOM05D003856 ORTHO05D004547 1.6e-11 73.6 51 80.4
Gorai.012G047500 Gossypium raimondii HOM05D003856 ORTHO05D004547 4.7e-11 72.0 51 78.4
Gorai.013G129800 Gossypium raimondii HOM05D003856 ORTHO05D004547 3.1e-10 69.3 109 45.0
Oeu040759.1 Olea europaea HOM05D003856 ORTHO05D004547 3.1e-10 69.3 52 80.8
GSVIVG01003331001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.3e-08 63.9 133 36.1
GSVIVG01003337001 Vitis vinifera HOM05D003856 ORTHO05D004547 1.3e-08 63.9 133 36.1
Nitab4.5_0003626g0020 Nicotiana tabacum HOM05D003856 ORTHO05D004547 1.7e-08 63.5 190 33.2
MD10G1332200 Malus domestica HOM05D003856 ORTHO05D004547 2.2e-08 63.2 89 44.9
CARHR290760 Cardamine hirsuta HOM05D003856 ORTHO05D004547 8.3e-08 61.2 84 46.4
COL.COLO4_31891 Corchorus olitorius HOM05D003856 ORTHO05D004547 5.4e-07 58.5 52 63.5


User provided reference genes

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