Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0835 Capsella rubella HOM05D009323 ORTHO05D012741 4.0e-122 441.4 218 100.0
AT5G48657 Arabidopsis thaliana HOM05D009323 ORTHO05D012741 3.1e-98 362.1 220 84.1
AL8G21710 Arabidopsis lyrata HOM05D009323 ORTHO05D012741 1.4e-95 353.2 221 85.1
BraA09t36094Z Brassica rapa HOM05D009323 ORTHO05D012741 7.1e-79 297.7 220 70.9
A09p04590 Brassica napus HOM05D009323 ORTHO05D012741 2.3e-77 292.7 220 70.5
C09p04900 Brassica napus HOM05D009323 ORTHO05D012741 9.6e-76 287.3 220 70.0
BolC9t53418H Brassica oleracea HOM05D009323 ORTHO05D012741 9.6e-76 287.3 220 70.0
Thhalv10004864m.g Eutrema salsugineum HOM05D009323 ORTHO05D012741 3.6e-75 285.4 228 70.2
BcaC04g23767 Brassica carinata HOM05D009323 ORTHO05D012741 5.2e-74 281.6 220 69.5
CARHR183260 Cardamine hirsuta HOM05D009323 ORTHO05D012741 1.7e-72 276.6 223 68.2
A06p39000 Brassica napus HOM05D009323 ORTHO05D012741 6.4e-72 274.6 225 68.4
Sp2g19070 Schrenkiella parvula HOM05D009323 ORTHO05D012741 1.6e-70 270.0 226 68.1
BcaB04g19582 Brassica carinata HOM05D009323 ORTHO05D012741 1.0e-69 267.3 224 66.5
C07p39330 Brassica napus HOM05D009323 ORTHO05D012741 2.5e-68 262.7 224 67.4
BolC7t44453H Brassica oleracea HOM05D009323 ORTHO05D012741 2.5e-68 262.7 224 67.4
BcaC06g30771 Brassica carinata HOM05D009323 ORTHO05D012741 1.4e-58 230.3 227 61.2
BraA06t26814Z Brassica rapa HOM05D009323 ORTHO05D012741 2.6e-57 226.1 194 65.5
Aa31sc571G10 Aethionema arabicum HOM05D009323 ORTHO05D012741 3.1e-50 202.6 225 58.7
Carub.0003s0671 Capsella rubella HOM05D009323 ORTHO05D015248 1.8e-29 133.7 243 44.9
A03p35140 Brassica napus HOM05D009323 ORTHO05D015248 5.3e-26 122.1 227 43.2
THA.LOC104818969 Tarenaya hassleriana HOM05D009323 ORTHO05D012741 1.5e-25 120.6 227 41.4
CARHR081840 Cardamine hirsuta HOM05D009323 ORTHO05D015248 1.3e-24 117.5 229 44.1
BolC3t16543H Brassica oleracea HOM05D009323 ORTHO05D015248 7.2e-23 111.7 224 42.0
BraA03t12694Z Brassica rapa HOM05D009323 ORTHO05D015248 2.1e-22 110.2 224 42.0
THA.LOC104802661 Tarenaya hassleriana HOM05D009323 ORTHO05D012741 2.7e-22 109.8 241 38.2
Thhalv10021478m.g Eutrema salsugineum HOM05D009323 ORTHO05D015248 7.4e-20 101.7 234 40.2
Sp3g06140 Schrenkiella parvula HOM05D009323 ORTHO05D015248 1.3e-19 100.9 225 38.2
AL3G18460 Arabidopsis lyrata HOM05D009323 ORTHO05D015248 3.7e-19 99.4 237 40.1
AT3G07195 Arabidopsis thaliana HOM05D009323 ORTHO05D015248 1.1e-18 97.8 252 34.9
BcaC05g29747 Brassica carinata HOM05D002516 ORTHO05D002703 1.8e-18 97.1 227 38.3
Aa31LG5G17760 Aethionema arabicum HOM05D009323 ORTHO05D015248 3.5e-17 92.8 218 35.8
BolC5t34668H Brassica oleracea HOM05D009323 ORTHO05D015248 1.3e-16 90.9 231 33.8
BcaC05g29849 Brassica carinata HOM05D002516 ORTHO05D002703 2.2e-16 90.1 213 34.3
A05p41010 Brassica napus HOM05D002516 ORTHO05D002703 2.1e-14 83.6 210 32.4
BraA05t22828Z Brassica rapa HOM05D002516 ORTHO05D002703 2.7e-14 83.2 213 32.9
Manes.13G048800 Manihot esculenta HOM05D002186 ORTHO05D002225 2.2e-11 73.6 273 30.0
C05p60160 Brassica napus HOM05D002516 ORTHO05D002703 5.3e-10 68.9 60 60.0
RcHm_v2.0_Chr6g0284211 Rosa chinensis HOM05D002186 ORTHO05D002225 7.0e-10 68.6 258 30.6
FAN15G3260 Fragaria x ananassa HOM05D002186 ORTHO05D002225 1.2e-09 67.8 258 30.2
A03p44020 Brassica napus HOM05D002186 ORTHO05D002225 2.0e-09 67.0 226 31.0
FvH4_2g18650 Fragaria vesca HOM05D002186 ORTHO05D002225 2.0e-09 67.0 258 30.2
FAN24G2024 Fragaria x ananassa HOM05D002186 ORTHO05D002225 2.0e-09 67.0 258 30.2
BcaC01g03246 Brassica carinata HOM05D002186 ORTHO05D002225 3.5e-09 66.2 228 32.0
FAN27G2350 Fragaria x ananassa HOM05D002186 ORTHO05D002225 4.5e-09 65.9 258 29.8
GSVIVG01004747001 Vitis vinifera HOM05D002186 ORTHO05D002225 4.5e-09 65.9 222 32.0
C03p54390 Brassica napus HOM05D002186 ORTHO05D002225 1.0e-08 64.7 229 31.4
BraA03t13533Z Brassica rapa HOM05D002186 ORTHO05D002225 1.0e-08 64.7 223 30.9
TWI18G0470 Tripterygium wilfordii HOM05D002186 ORTHO05D002225 1.3e-08 64.3 273 31.9
Gorai.001G232400 Gossypium raimondii HOM05D002186 ORTHO05D002225 2.2e-08 63.5 267 28.1
TWI36G0241 Tripterygium wilfordii HOM05D002186 ORTHO05D002225 2.2e-08 63.5 278 30.6
C03p42750 Brassica napus HOM05D009323 ORTHO05D015248 2.9e-08 63.2 56 58.9
CiPaw.02G022900 Carya illinoinensis HOM05D002186 ORTHO05D002225 2.9e-08 63.2 257 33.1
MD10G1160600 Malus domestica HOM05D002186 ORTHO05D002225 3.8e-08 62.8 248 30.6
QL09p052490 Quercus lobata HOM05D002186 ORTHO05D002225 3.8e-08 62.8 279 31.5
Potri.002G245400 Populus trichocarpa HOM05D002186 ORTHO05D002225 5.0e-08 62.4 271 29.9
BcaB08g34432 Brassica carinata HOM05D002186 ORTHO05D002225 6.5e-08 62.0 229 30.6
Dinv12658 Davidia involucrata HOM05D002186 ORTHO05D002225 8.5e-08 61.6 156 36.5
Gohir.D07G206100 Gossypium hirsutum HOM05D002186 ORTHO05D002225 8.5e-08 61.6 266 26.3
Dinv19181 Davidia involucrata HOM05D002186 ORTHO05D002225 1.1e-07 61.2 151 37.7
BolC3t17726H Brassica oleracea HOM05D002186 ORTHO05D002225 1.9e-07 60.5 226 31.0
Gohir.A07G199700 Gossypium hirsutum HOM05D002186 ORTHO05D002225 2.5e-07 60.1 266 25.6
Prupe.8G199800 Prunus persica HOM05D002186 ORTHO05D002225 2.5e-07 60.1 258 29.1
Sabra02G0186700 Salix brachista HOM05D002186 ORTHO05D002225 2.5e-07 60.1 268 29.9
Duzib133G1090 Durio zibethinus HOM05D002186 ORTHO05D002225 3.2e-07 59.7 270 30.4
CSS0016957 Camellia sinensis var. sinensis HOM05D002186 ORTHO05D002225 7.2e-07 58.5 150 35.3
CSS0037554 Camellia sinensis var. sinensis HOM05D002186 ORTHO05D002225 7.2e-07 58.5 150 35.3
Hma1.2p1_0149F.1_g066350 Hydrangea macrophylla HOM05D002186 ORTHO05D002225 1.2e-06 57.8 234 31.6
Cc01_g16790 Coffea canephora HOM05D002186 ORTHO05D002225 2.1e-06 57.0 258 28.7
Actinidia09472 Actinidia chinensis HOM05D002186 ORTHO05D002225 2.7e-06 56.6 266 28.6
Atru.chr6.1419 Acer truncatum HOM05D002186 ORTHO05D002225 3.6e-06 56.2 270 29.3
CANSAT01G1734 Cannabis sativa HOM05D002186 ORTHO05D002225 4.7e-06 55.8 267 29.2
Duzib138G0625 Durio zibethinus HOM05D002186 ORTHO05D002225 6.1e-06 55.5 268 27.2
THA.LOC104808790 Tarenaya hassleriana HOM05D002186 ORTHO05D002225 6.1e-06 55.5 229 29.7
Gohir.A08G195300 Gossypium hirsutum HOM05D002186 ORTHO05D002225 8.0e-06 55.1 265 28.3


User provided reference genes

Program Settings