Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0818 Capsella rubella HOM05D024583 ORTHO05D023708 1.2e-258 896.0 430 100.0
Thhalv10005398m.g Eutrema salsugineum HOM05D024583 ORTHO05D023708 2.8e-111 406.4 484 48.8
AT5G48550 Arabidopsis thaliana HOM05D024583 ORTHO05D023708 5.5e-91 339.0 216 73.1
CARHR288010 Cardamine hirsuta HOM05D024583 ORTHO05D023708 4.1e-46 189.9 141 61.7
CARHR288000 Cardamine hirsuta HOM05D024583 ORTHO05D023708 4.0e-41 173.3 144 59.0
RcHm_v2.0_Chr4g0428611 Rosa chinensis HOM05D003981 ORTHO05D003666 2.6e-16 90.9 377 26.0
RcHm_v2.0_Chr5g0016491 Rosa chinensis HOM05D003981 ORTHO05D003666 3.7e-15 87.0 398 25.4
QL08p033970 Quercus lobata HOM05D000007 ORTHO05D003666 1.1e-14 85.5 359 24.2
CiPaw.13G152900 Carya illinoinensis HOM05D000007 ORTHO05D003666 1.0e-12 79.0 360 23.1
Medtr5g010660 Medicago truncatula HOM05D000007 ORTHO05D000521 6.6e-12 76.3 291 26.5
Haze_23197 Corylus avellana HOM05D000007 ORTHO05D003666 8.1e-10 69.3 324 24.1
RcHm_v2.0_Chr3g0460411 Rosa chinensis HOM05D003981 ORTHO05D003666 8.1e-10 69.3 399 23.3
MD17G1253700 Malus domestica HOM05D000007 ORTHO05D000039 1.1e-09 68.9 329 22.5
PSO675G0148 Papaver somniferum HOM05D000007 ORTHO05D000017 1.1e-09 68.9 216 28.2
Hma1.2p1_0405F.1_g145650 Hydrangea macrophylla HOM05D000007 ORTHO05D000521 1.8e-09 68.2 344 20.3
Actinidia06940 Actinidia chinensis HOM05D003981 ORTHO05D003666 2.3e-09 67.8 322 22.7
MD12G1195000 Malus domestica HOM05D003981 ORTHO05D003666 2.3e-09 67.8 423 21.3
FAN09G1004 Fragaria x ananassa HOM05D003981 ORTHO05D003666 4.0e-09 67.0 400 23.5
AL1G54580 Arabidopsis lyrata HOM05D000171 ORTHO05D000101 6.8e-09 66.2 329 25.2
DCAR_024015 Daucus carota HOM05D000007 ORTHO05D000039 8.9e-09 65.9 338 22.8
PSO478G2962 Papaver somniferum HOM05D000007 ORTHO05D000017 1.5e-08 65.1 266 23.7
Prupe.2G209200 Prunus persica HOM05D003981 ORTHO05D003666 1.5e-08 65.1 349 24.9
Aqoxy6G02474 Aquilegia oxysepala HOM05D000007 ORTHO05D026711 2.0e-08 64.7 345 21.4
Medtr5g010560 Medicago truncatula HOM05D000007 ORTHO05D000521 4.4e-08 63.5 341 24.6
Aa31LG6G10550 Aethionema arabicum HOM05D000171 ORTHO05D000101 5.8e-08 63.2 299 23.7
A05p29800 Brassica napus HOM05D000171 ORTHO05D000101 5.8e-08 63.2 283 25.4
BraA05t21817Z Brassica rapa HOM05D000171 ORTHO05D000101 5.8e-08 63.2 275 25.5
Thhalv10003356m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 5.8e-08 63.2 283 24.7
MSTRG.24628 Avicennia marina HOM05D000007 ORTHO05D000017 7.6e-08 62.8 226 27.0
CAN.G64.26 Capsicum annuum HOM05D000007 ORTHO05D000017 7.6e-08 62.8 248 26.2
FvH4_4g34520 Fragaria vesca HOM05D003981 ORTHO05D003666 7.6e-08 62.8 322 25.8
Thhalv10011993m.g Eutrema salsugineum HOM05D000171 ORTHO05D000101 9.9e-08 62.4 264 25.0
FAN12G3036 Fragaria x ananassa HOM05D003981 ORTHO05D003666 9.9e-08 62.4 322 25.8
FAN17G1570 Fragaria x ananassa HOM05D003981 ORTHO05D003666 9.9e-08 62.4 420 23.8
Dinv05848 Davidia involucrata HOM05D000007 ORTHO05D000521 1.7e-07 61.6 167 31.1
Peaxi162Scf01070g00125 Petunia axillaris HOM05D000007 ORTHO05D000017 1.7e-07 61.6 206 24.8
Cfa007606 Carpinus fangiana HOM05D000007 ORTHO05D000039 2.9e-07 60.8 237 26.2
Haze_25176 Corylus avellana HOM05D000007 ORTHO05D003666 2.9e-07 60.8 307 22.5
ECA247G1607 Erigeron canadensis HOM05D000006 ORTHO05D000039 2.9e-07 60.8 208 26.9
ECA247G1967 Erigeron canadensis HOM05D000007 ORTHO05D000039 2.9e-07 60.8 208 26.9
RcHm_v2.0_Chr3g0480281 Rosa chinensis HOM05D003981 ORTHO05D003666 2.9e-07 60.8 320 22.2
BraA05t21830Z Brassica rapa HOM05D000171 ORTHO05D000101 3.7e-07 60.5 281 25.3
FAN06G4881 Fragaria x ananassa HOM05D000007 ORTHO05D000017 3.7e-07 60.5 252 24.6
MD17G1251900 Malus domestica HOM05D000007 ORTHO05D000039 3.7e-07 60.5 262 23.7
PSO832G3813 Papaver somniferum HOM05D000007 ORTHO05D000676 3.7e-07 60.5 192 24.5
COL.COLO4_19027 Corchorus olitorius HOM05D000007 ORTHO05D000017 4.9e-07 60.1 188 28.2
Nitab4.5_0000941g0210 Nicotiana tabacum HOM05D000007 ORTHO05D000017 4.9e-07 60.1 228 27.6
RcHm_v2.0_Chr6g0275741 Rosa chinensis HOM05D000007 ORTHO05D000017 4.9e-07 60.1 235 24.3
Ciclev10006826m.g Citrus clementina HOM05D000007 ORTHO05D003666 6.4e-07 59.7 327 24.5
FvH4_5g33960 Fragaria vesca HOM05D000007 ORTHO05D000039 8.4e-07 59.3 241 26.1
FvH4_7g26000 Fragaria vesca HOM05D000007 ORTHO05D000017 8.4e-07 59.3 252 24.2
FAN08G3168 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.4e-07 59.3 241 26.1
FAN18G4160 Fragaria x ananassa HOM05D000007 ORTHO05D000039 8.4e-07 59.3 241 26.1
PSO541G0121 Papaver somniferum HOM05D000007 ORTHO05D000017 8.4e-07 59.3 225 23.1
Cfa007609 Carpinus fangiana HOM05D000007 ORTHO05D000039 1.1e-06 58.9 234 27.8
Aqoxy4G02034 Aquilegia oxysepala HOM05D000007 ORTHO05D000521 1.4e-06 58.5 293 22.9
FAN04G2450 Fragaria x ananassa HOM05D000007 ORTHO05D000039 1.4e-06 58.5 241 26.1
FAN16G2079 Fragaria x ananassa HOM05D003981 ORTHO05D003666 1.4e-06 58.5 408 22.3
Oeu016715.1 Olea europaea HOM05D000007 ORTHO05D000017 1.4e-06 58.5 188 28.2
PSO210G6767 Papaver somniferum HOM05D000007 ORTHO05D000676 1.4e-06 58.5 190 27.9
BcaB03g12738 Brassica carinata HOM05D000171 ORTHO05D000101 1.9e-06 58.2 273 24.9
COL.COLO4_15974 Corchorus olitorius HOM05D000007 ORTHO05D000521 2.4e-06 57.8 378 21.2
FvH4_3g40671 Fragaria vesca HOM05D003981 ORTHO05D003666 2.4e-06 57.8 406 22.9
unitig_8.g4667 Utricularia gibba HOM05D000007 ORTHO05D000017 2.4e-06 57.8 163 27.6
Aqoxy4G02064 Aquilegia oxysepala HOM05D000007 ORTHO05D000017 3.2e-06 57.4 294 24.8
BcaB03g15211 Brassica carinata HOM05D000171 ORTHO05D000101 3.2e-06 57.4 291 22.7
FAN11G1242 Fragaria x ananassa HOM05D003981 ORTHO05D003666 4.1e-06 57.0 363 22.9
Nitab4.5_0000191g0060 Nicotiana tabacum HOM05D000007 ORTHO05D000017 4.1e-06 57.0 224 23.7
QL04p018852 Quercus lobata HOM05D000007 ORTHO05D000039 4.1e-06 57.0 368 22.8
PSO063G3839 Papaver somniferum HOM05D000007 ORTHO05D000017 5.4e-06 56.6 194 25.3
SalBow1G8211 Salvia bowleyana HOM05D000007 ORTHO05D000017 5.4e-06 56.6 233 24.5
AL3G17110 Arabidopsis lyrata HOM05D000007 ORTHO05D000017 7.1e-06 56.2 248 25.8
Haze_02867 Corylus avellana HOM05D000007 ORTHO05D000039 7.1e-06 56.2 254 27.6
DCAR_017067 Daucus carota HOM05D000007 ORTHO05D000017 7.1e-06 56.2 190 26.8
Migut.N00360 Erythranthe guttata HOM05D000007 ORTHO05D000017 7.1e-06 56.2 225 24.4
FAN14G5293 Fragaria x ananassa HOM05D000007 ORTHO05D000039 7.1e-06 56.2 259 23.6
Lsat_1_v5_gn_9_104220 Lactuca sativa HOM05D000007 ORTHO05D000521 7.1e-06 56.2 396 23.2
Peaxi162Scf00421g00021 Petunia axillaris HOM05D000007 ORTHO05D000017 7.1e-06 56.2 230 23.5
PGSC0003DMG400003796 Solanum tuberosum HOM05D000007 ORTHO05D000017 7.1e-06 56.2 224 23.7
PSO675G4126 Papaver somniferum HOM05D000007 ORTHO05D000017 9.2e-06 55.8 186 22.6


User provided reference genes

Program Settings