Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0814 Capsella rubella HOM05D002916 ORTHO05D003152 4.3e-98 361.3 182 100.0
AT3G10120 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 7.2e-77 290.8 186 79.6
AL3G21460 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 1.2e-74 283.5 189 75.1
Thhalv10021626m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 2.1e-68 262.7 184 72.8
Sp3g08400 Schrenkiella parvula HOM05D002916 ORTHO05D003152 6.1e-68 261.2 184 72.8
CARHR084600 Cardamine hirsuta HOM05D002916 ORTHO05D003152 9.8e-66 253.8 187 70.1
C05p58000 Brassica napus HOM05D002916 ORTHO05D003152 3.5e-63 245.4 183 68.9
BcaC09g48115 Brassica carinata HOM05D002916 ORTHO05D003152 4.5e-63 245.0 182 69.8
BolC5t34456H Brassica oleracea HOM05D002916 ORTHO05D003152 4.5e-63 245.0 183 68.9
BcaNung05911 Brassica carinata HOM05D002916 ORTHO05D003152 7.7e-63 244.2 184 68.5
BcaNung06240 Brassica carinata HOM05D002916 ORTHO05D003152 1.7e-62 243.0 183 68.3
BolC1t05420H Brassica oleracea HOM05D002916 ORTHO05D003152 3.8e-62 241.9 182 69.2
A05p38970 Brassica napus HOM05D002916 ORTHO05D003152 1.1e-61 240.4 181 68.0
BcaB04g21229 Brassica carinata HOM05D002916 ORTHO05D003152 1.5e-61 240.0 186 67.7
BraA05t22688Z Brassica rapa HOM05D002916 ORTHO05D003152 1.9e-61 239.6 181 67.4
A01p42040 Brassica napus HOM05D002916 ORTHO05D003152 9.8e-50 200.7 155 67.7
BraA01t04273Z Brassica rapa HOM05D002916 ORTHO05D003152 9.8e-50 200.7 155 67.7
C09p73040 Brassica napus HOM05D002916 ORTHO05D003152 1.3e-46 190.3 179 57.5
A10p32230 Brassica napus HOM05D002916 ORTHO05D003152 1.7e-46 189.9 179 58.1
BraA10t45266Z Brassica rapa HOM05D002916 ORTHO05D003152 1.7e-46 189.9 179 58.1
Carub.0006s0284 Capsella rubella HOM05D002916 ORTHO05D003152 3.9e-46 188.7 183 59.0
AL6G13470 Arabidopsis lyrata HOM05D002916 ORTHO05D003152 1.5e-45 186.8 183 59.6
C03p01810 Brassica napus HOM05D002916 ORTHO05D003152 1.5e-45 186.8 186 57.0
BolC9t60038H Brassica oleracea HOM05D002916 ORTHO05D003152 1.9e-45 186.4 180 57.2
A03p01480 Brassica napus HOM05D002916 ORTHO05D003152 5.6e-45 184.9 186 56.5
BraA03t09526Z Brassica rapa HOM05D002916 ORTHO05D003152 5.6e-45 184.9 186 56.5
Thhalv10014801m.g Eutrema salsugineum HOM05D002916 ORTHO05D003152 1.2e-44 183.7 183 56.8
AT5G03890 Arabidopsis thaliana HOM05D002916 ORTHO05D003152 2.8e-44 182.6 183 58.5
THA.LOC104816397 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 8.9e-43 177.6 185 57.8
CARHR209370 Cardamine hirsuta HOM05D002916 ORTHO05D003152 1.2e-42 177.2 186 56.5
Aa31LG3G2650 Aethionema arabicum HOM05D002916 ORTHO05D003152 2.7e-39 166.0 204 52.5
BcaC06g32092 Brassica carinata HOM05D002916 ORTHO05D003152 2.7e-39 166.0 176 54.5
Sp6g38840 Schrenkiella parvula HOM05D002916 ORTHO05D003152 6.0e-39 164.9 178 54.5
BcaB01g05762 Brassica carinata HOM05D002916 ORTHO05D003152 2.1e-36 156.4 181 52.5
Cpa.g.sc5.15 Carica papaya HOM05D002916 ORTHO05D003152 3.4e-34 149.1 187 44.9
COL.COLO4_29727 Corchorus olitorius HOM05D002916 ORTHO05D003152 9.9e-34 147.5 186 45.2
BolC3t12736H Brassica oleracea HOM05D002916 ORTHO05D003152 3.8e-33 145.6 152 55.9
Duzib093G0112 Durio zibethinus HOM05D002916 ORTHO05D003152 1.2e-31 140.6 183 44.3
Atru.chr8.1530 Acer truncatum HOM05D002916 ORTHO05D003152 1.6e-31 140.2 184 44.0
Thecc.05G089800 Theobroma cacao HOM05D002916 ORTHO05D003152 1.6e-31 140.2 184 44.0
Rhsim03G0074900 Rhododendron simsii HOM05D002916 ORTHO05D003152 2.1e-31 139.8 185 42.7
Atru.chr8.1528 Acer truncatum HOM05D002916 ORTHO05D003152 6.0e-31 138.3 184 44.6
Gorai.002G239800 Gossypium raimondii HOM05D002916 ORTHO05D003152 1.7e-30 136.7 185 43.2
Gohir.D01G195600 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.5e-29 133.7 185 42.7
Lalb_Chr01g0018131 Lupinus albus HOM05D002916 ORTHO05D003152 1.9e-29 133.3 187 41.7
Duzib128G0442 Durio zibethinus HOM05D002916 ORTHO05D003152 1.6e-28 130.2 184 43.5
Manes.08G025700 Manihot esculenta HOM05D002916 ORTHO05D003152 2.8e-28 129.4 185 43.8
Gohir.A01G206200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 3.6e-28 129.0 187 41.7
Ciclev10012941m.g Citrus clementina HOM05D002916 ORTHO05D003152 8.1e-28 127.9 184 42.4
Prupe.7G109500 Prunus persica HOM05D002916 ORTHO05D003152 8.1e-28 127.9 184 40.8
Potri.006G213100 Populus trichocarpa HOM05D002916 ORTHO05D003152 1.4e-27 127.1 182 43.4
THA.LOC104826943 Tarenaya hassleriana HOM05D002916 ORTHO05D003152 3.1e-27 125.9 183 46.4
Gohir.D09G135200 Gossypium hirsutum HOM05D002916 ORTHO05D003152 5.2e-27 125.2 184 40.2
Peaxi162Scf00404g00102 Petunia axillaris HOM05D002916 ORTHO05D003152 6.9e-27 124.8 185 39.5
Glyma.19G194943 Glycine max HOM05D002916 ORTHO05D003152 1.2e-26 124.0 179 41.3
Gohir.A07G134900 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.5e-26 123.6 184 38.6
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 2.0e-26 123.2 183 38.8
Gorai.006G155100 Gossypium raimondii HOM05D002916 ORTHO05D003152 2.0e-26 123.2 184 39.7
Phvul.001G190500 Phaseolus vulgaris HOM05D002916 ORTHO05D003152 7.6e-26 121.3 185 40.5
Gohir.A11G003500 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.3e-25 120.6 176 38.6
Oeu047865.1 Olea europaea HOM05D002916 ORTHO05D003152 2.9e-25 119.4 185 40.0
Ciclev10013433m.g Citrus clementina HOM05D002916 ORTHO05D003152 3.8e-25 119.0 189 40.7
FAN02G4366 Fragaria x ananassa HOM05D002916 ORTHO05D003152 4.9e-25 118.6 185 39.5
Manes.09G055000 Manihot esculenta HOM05D002916 ORTHO05D003152 6.4e-25 118.2 186 39.2
Sabra16G0087700 Salix brachista HOM05D002916 ORTHO05D003152 1.1e-24 117.5 183 39.3
Glyma.03G196300 Glycine max HOM05D002916 ORTHO05D003152 1.4e-24 117.1 181 42.0
Glyma.10G072400 Glycine max HOM05D002916 ORTHO05D003152 1.9e-24 116.7 180 36.7
Gohir.A09G139400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.9e-24 116.7 139 44.6
Potri.016G079700 Populus trichocarpa HOM05D002916 ORTHO05D003152 1.9e-24 116.7 181 40.9
Sabra16G0085600 Salix brachista HOM05D002916 ORTHO05D003152 2.4e-24 116.3 183 39.3
Ca_09009_v3 Cicer arietinum L. HOM05D002916 ORTHO05D003152 3.2e-24 115.9 187 40.1
Eucgr.K02033 Eucalyptus grandis HOM05D002916 ORTHO05D003152 3.2e-24 115.9 190 34.7
Nn2g14164 Nelumbo nucifera HOM05D002916 ORTHO05D003152 3.2e-24 115.9 183 38.3
TWI74G0225 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 4.2e-24 115.5 186 38.7
Aqoxy4G02773 Aquilegia oxysepala HOM05D002916 ORTHO05D003152 5.4e-24 115.2 183 40.4
RcHm_v2.0_Chr3g0473821 Rosa chinensis HOM05D002916 ORTHO05D003152 5.4e-24 115.2 185 40.0
FvH4_6g18810 Fragaria vesca HOM05D002916 ORTHO05D003152 7.1e-24 114.8 185 38.4
FAN14G1204 Fragaria x ananassa HOM05D002916 ORTHO05D003152 7.1e-24 114.8 185 38.4
VMungo1383G0514 Vigna mungo HOM05D002916 ORTHO05D003152 9.3e-24 114.4 182 37.9
Gohir.A05G000100 Gossypium hirsutum HOM05D002916 ORTHO05D003152 1.6e-23 113.6 181 37.0
Nn6g34891 Nelumbo nucifera HOM05D002916 ORTHO05D003152 2.1e-23 113.2 181 38.7
Oeu056929.1 Olea europaea HOM05D002916 ORTHO05D003152 2.1e-23 113.2 183 38.8
QL05p034193 Quercus lobata HOM05D002916 ORTHO05D003152 3.5e-23 112.5 184 38.0
CiPaw.01G252200 Carya illinoinensis HOM05D002916 ORTHO05D003152 6.0e-23 111.7 185 38.4
FAN05G3486 Fragaria x ananassa HOM05D002916 ORTHO05D003152 6.0e-23 111.7 185 38.4
TWI53G0172 Tripterygium wilfordii HOM05D002916 ORTHO05D003152 6.0e-23 111.7 186 36.6
CANSAT64G0492 Cannabis sativa HOM05D002916 ORTHO05D003152 7.8e-23 111.3 205 39.5
MD12G1036700 Malus domestica HOM05D002916 ORTHO05D003152 1.0e-22 110.9 186 36.0
FAN05G4254 Fragaria x ananassa HOM05D002916 ORTHO05D003152 1.3e-22 110.5 185 38.9
Glyma.13G153800 Glycine max HOM05D002916 ORTHO05D003152 1.3e-22 110.5 181 35.9
Lj1g0017693 Lotus japonicus HOM05D002916 ORTHO05D003152 1.3e-22 110.5 191 37.7
Cfa001906 Carpinus fangiana HOM05D002916 ORTHO05D003152 1.7e-22 110.2 187 40.6
PGSC0003DMG400008880 Solanum tuberosum HOM05D002916 ORTHO05D003152 1.7e-22 110.2 201 37.3
Gohir.D04G099400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 3.9e-22 109.0 185 37.8
Gohir.A04G062400 Gossypium hirsutum HOM05D002916 ORTHO05D003152 5.1e-22 108.6 185 35.7
Gorai.009G402300 Gossypium raimondii HOM05D002916 ORTHO05D003152 5.1e-22 108.6 185 37.8
MSTRG.26638 Avicennia marina HOM05D002916 ORTHO05D003152 3.3e-21 105.9 186 34.9
Actinidia05426 Actinidia chinensis HOM05D002916 ORTHO05D003152 4.3e-21 105.5 184 34.8
Haze_16636 Corylus avellana HOM05D002916 ORTHO05D003152 7.3e-21 104.8 186 39.8
Solyc09g009810.1 Solanum lycopersicum HOM05D002916 ORTHO05D003152 7.3e-21 104.8 199 35.7
Sed0018474 Sechium edule HOM05D002916 ORTHO05D003152 9.6e-21 104.4 187 36.4
Sabra06G0164100 Salix brachista HOM05D002916 ORTHO05D003152 1.3e-20 104.0 156 42.3
Haze_16634 Corylus avellana HOM05D002916 ORTHO05D003152 1.6e-20 103.6 186 39.2
DCAR_013390 Daucus carota HOM05D002916 ORTHO05D003152 1.6e-20 103.6 182 34.1
DCAR_013389 Daucus carota HOM05D002916 ORTHO05D003152 3.6e-20 102.4 180 32.2
PGR142G0380 Punica granatum HOM05D002916 ORTHO05D003152 4.8e-20 102.1 197 33.0
A05p13670 Brassica napus HOM05D002916 ORTHO05D003152 1.4e-19 100.5 132 46.2
MD14G1023400 Malus domestica HOM05D002916 ORTHO05D003152 1.4e-19 100.5 183 35.0
arahy.Tifrunner.gnm1.ann1.1GMW3T Arachis hypogaea HOM05D002916 ORTHO05D003152 1.8e-19 100.1 188 35.6
arahy.Tifrunner.gnm1.ann1.T8X57X Arachis hypogaea HOM05D002916 ORTHO05D003152 1.8e-19 100.1 188 35.6
CsaV3_6G040690 Cucumis sativus L. HOM05D002916 ORTHO05D003152 3.1e-19 99.4 195 32.3
Cc06_g05820 Coffea canephora HOM05D002916 ORTHO05D003152 5.3e-19 98.6 180 33.3
Migut.L01781 Erythranthe guttata HOM05D002916 ORTHO05D003152 5.3e-19 98.6 190 33.7
DCAR_009166 Daucus carota HOM05D002916 ORTHO05D003152 6.9e-19 98.2 184 33.2
MELO3C024547.2 Cucumis melo HOM05D002916 ORTHO05D003152 9.0e-19 97.8 194 32.0
DCAR_007755 Daucus carota HOM05D002916 ORTHO05D003152 1.2e-18 97.4 180 34.4
Migut.J01032 Erythranthe guttata HOM05D002916 ORTHO05D003152 1.2e-18 97.4 157 38.9
Hma1.2p1_0084F.1_g043850 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 4.5e-18 95.5 167 36.5
Hma1.2p1_0820F.1_g223855 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 4.5e-18 95.5 167 36.5
Actinidia31270 Actinidia chinensis HOM05D002916 ORTHO05D003152 2.9e-17 92.8 173 35.8
AUR62028520 Chenopodium quinoa HOM05D002916 ORTHO05D003152 3.8e-17 92.4 184 34.2
ClCG04G010060 Citrullus lanatus HOM05D002916 ORTHO05D003152 3.8e-17 92.4 188 30.9
AUR62006186 Chenopodium quinoa HOM05D002916 ORTHO05D003152 8.4e-17 91.3 182 33.0
Ah.15g090860 Amaranthus hybridus HOM05D002916 ORTHO05D003152 2.4e-16 89.7 187 33.2
PSO339G4347 Papaver somniferum HOM05D002916 ORTHO05D003152 4.2e-16 89.0 187 31.6
PGR004G1189 Punica granatum HOM05D002916 ORTHO05D003152 5.4e-16 88.6 183 32.8
DCAR_013391 Daucus carota HOM05D002916 ORTHO05D003152 7.1e-16 88.2 181 29.3
DCAR_013392 Daucus carota HOM05D002916 ORTHO05D003152 1.6e-15 87.0 180 30.6
Lsat_1_v5_gn_5_164861 Lactuca sativa HOM05D002916 ORTHO05D003152 1.3e-14 84.0 181 31.5
Nitab4.5_0001712g0010 Nicotiana tabacum HOM05D002916 ORTHO05D003152 3.0e-14 82.8 139 38.1
SGA_v2.0_scaffold184G39965 Striga asiatica HOM05D002916 ORTHO05D003152 5.6e-13 78.6 131 38.2
CSS0010688 Camellia sinensis var. sinensis HOM05D002916 ORTHO05D003152 9.6e-13 77.8 130 39.2
SEGI_19412 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 2.8e-12 76.3 196 32.7
TPR.G23310 Trifolium pratense HOM05D002916 ORTHO05D003152 2.8e-12 76.3 182 31.9
Medtr7g104680 Medicago truncatula HOM05D002916 ORTHO05D003152 1.4e-11 73.9 187 31.6
BolC6t35258H Brassica oleracea HOM05D002916 ORTHO05D003152 4.0e-11 72.4 85 44.7
Sopen09g004570 Solanum pennellii HOM05D002916 ORTHO05D003152 4.0e-11 72.4 185 31.4
SalBow4G3036 Salvia bowleyana HOM05D002916 ORTHO05D003152 2.0e-10 70.1 118 38.1
DCAR_008976 Daucus carota HOM05D002916 ORTHO05D003152 7.6e-10 68.2 195 25.6
BcaC05g24792 Brassica carinata HOM05D002916 ORTHO05D003152 1.7e-09 67.0 61 54.1
Nitab4.5_0003610g0010 Nicotiana tabacum HOM05D002916 ORTHO05D003152 3.8e-09 65.9 185 28.6
Prupe.2G317800 Prunus persica HOM05D002916 ORTHO05D003152 6.4e-09 65.1 184 27.7
C06p01440 Brassica napus HOM05D002916 ORTHO05D003152 8.4e-09 64.7 79 43.0
TAR623G0367 Trochodendron aralioides HOM05D002916 ORTHO05D003152 8.4e-09 64.7 137 33.6
SEGI_19965 Sequoiadendron giganteum HOM05D002916 ORTHO05D003152 1.1e-08 64.3 192 29.2
Nitab4.5_0000794g0180 Nicotiana tabacum HOM05D002916 ORTHO05D003152 2.4e-08 63.2 60 45.0
Rhsim03G0214600 Rhododendron simsii HOM05D001023 ORTHO05D000912 3.2e-08 62.8 189 29.1
Cfa016172 Carpinus fangiana HOM05D002916 ORTHO05D003152 4.2e-08 62.4 171 29.2
Hma1.2p1_0094F.1_g047290 Hydrangea macrophylla HOM05D002916 ORTHO05D003152 4.2e-08 62.4 195 23.6
BcaC08g42908 Brassica carinata HOM05D002916 ORTHO05D003152 9.3e-08 61.2 56 50.0
Haze_00282 Corylus avellana HOM05D002916 ORTHO05D003152 9.3e-08 61.2 170 30.0
Sed0016396 Sechium edule HOM05D002916 ORTHO05D003152 9.3e-08 61.2 173 26.0
ATR0078G023 Amborella trichopoda HOM05D002916 ORTHO05D003152 1.2e-07 60.8 192 27.6
ECA236G4089 Erigeron canadensis HOM05D002916 ORTHO05D003152 1.2e-07 60.8 182 27.5
ClCG01G000110 Citrullus lanatus HOM05D002916 ORTHO05D003152 6.0e-07 58.5 175 25.7
Duzib084G1372 Durio zibethinus HOM05D002916 ORTHO05D003152 7.9e-07 58.2 173 26.6
QL02p027552 Quercus lobata HOM05D002916 ORTHO05D003152 7.9e-07 58.2 178 27.5
SGA_v2.0_scaffold35G14068 Striga asiatica HOM05D002916 ORTHO05D003152 7.9e-07 58.2 108 38.9
Dinv29219 Davidia involucrata HOM05D002916 ORTHO05D003152 1.0e-06 57.8 186 29.6
Glyma.04G229700 Glycine max HOM05D002916 ORTHO05D003152 1.0e-06 57.8 134 26.9
Glyma.06G135000 Glycine max HOM05D002916 ORTHO05D003152 1.0e-06 57.8 178 26.4
QL09p007312 Quercus lobata HOM05D002916 ORTHO05D003152 1.0e-06 57.8 190 26.3
Thecc.03G207400 Theobroma cacao HOM05D002916 ORTHO05D003152 1.0e-06 57.8 182 26.4
VMungo1309G2175 Vigna mungo HOM05D002916 ORTHO05D003152 1.3e-06 57.4 196 27.0
BolC3t19576H Brassica oleracea HOM05D002916 ORTHO05D003152 1.8e-06 57.0 39 66.7
PSO384G2526 Papaver somniferum HOM05D002916 ORTHO05D003152 2.3e-06 56.6 187 24.6
PSO478G4364 Papaver somniferum HOM05D002916 ORTHO05D003152 2.3e-06 56.6 173 27.7
Atru.chr12.2401 Acer truncatum HOM05D002916 ORTHO05D003152 3.9e-06 55.8 183 27.3
Haze_09193 Corylus avellana HOM05D002916 ORTHO05D003152 3.9e-06 55.8 190 25.3
BraA05t21437Z Brassica rapa HOM05D002916 ORTHO05D003152 5.1e-06 55.5 62 48.4
CANSAT21G0001 Cannabis sativa HOM05D002916 ORTHO05D003152 5.1e-06 55.5 180 27.2
Psat5g073040 Pisum sativum HOM05D002916 ORTHO05D003152 5.1e-06 55.5 192 26.6
CiPaw.06G042000 Carya illinoinensis HOM05D002916 ORTHO05D003152 8.7e-06 54.7 194 22.7


User provided reference genes

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