Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0805 Capsella rubella HOM05D006407 ORTHO05D008079 5.6e-223 777.3 399 100.0
AT5G48470 Arabidopsis thaliana HOM05D006407 ORTHO05D008079 1.2e-212 743.0 399 95.7
AL8G21320 Arabidopsis lyrata HOM05D006407 ORTHO05D008079 6.0e-209 730.7 399 95.0
CARHR183610 Cardamine hirsuta HOM05D006407 ORTHO05D008079 1.0e-208 729.9 399 93.7
C09p04840 Brassica napus HOM05D006407 ORTHO05D008079 2.8e-198 695.3 399 90.2
Thhalv10004357m.g Eutrema salsugineum HOM05D006407 ORTHO05D008079 1.1e-197 693.3 400 91.0
BcaC04g23774 Brassica carinata HOM05D006407 ORTHO05D008079 5.3e-197 691.0 399 89.5
BolC9t53411H Brassica oleracea HOM05D006407 ORTHO05D008079 5.3e-197 691.0 399 89.5
A09p04530 Brassica napus HOM05D006407 ORTHO05D008079 1.3e-195 686.4 399 89.2
BcaB04g19579 Brassica carinata HOM05D006407 ORTHO05D008079 2.2e-195 685.6 399 88.5
BraA09t36088Z Brassica rapa HOM05D006407 ORTHO05D008079 4.9e-195 684.5 399 89.0
Aa31sc527G10 Aethionema arabicum HOM05D006407 ORTHO05D008079 5.1e-192 674.5 394 89.1
Sp2g18840 Schrenkiella parvula HOM05D006407 ORTHO05D008079 2.6e-188 662.1 399 87.7
THA.LOC104802645 Tarenaya hassleriana HOM05D006407 ORTHO05D008079 4.8e-182 641.3 401 82.8
Cpa.g.sc8.72 Carica papaya HOM05D006407 ORTHO05D008079 6.5e-163 577.8 410 76.1
Haze_03500 Corylus avellana HOM05D006407 ORTHO05D008079 3.7e-158 562.0 400 75.8
Cfa010568 Carpinus fangiana HOM05D006407 ORTHO05D008079 5.3e-157 558.1 360 80.3
Gorai.N003300 Gossypium raimondii HOM05D006407 ORTHO05D008079 5.3e-157 558.1 404 73.3
Gohir.A07G159200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 1.3e-155 553.5 408 72.8
Manes.12G054200 Manihot esculenta HOM05D006407 ORTHO05D008079 2.2e-155 552.7 399 73.9
CiPaw.14G043600 Carya illinoinensis HOM05D006407 ORTHO05D008079 1.1e-154 550.4 361 79.5
Actinidia30017 Actinidia chinensis HOM05D006407 ORTHO05D008079 1.4e-154 550.1 363 78.5
Thecc.01G211000 Theobroma cacao HOM05D006407 ORTHO05D008079 4.2e-154 548.5 397 73.6
Dinv28811 Davidia involucrata HOM05D006407 ORTHO05D008079 6.1e-153 544.7 388 73.5
RcHm_v2.0_Chr6g0282821 Rosa chinensis HOM05D006407 ORTHO05D008079 6.1e-153 544.7 407 71.0
Eucgr.H00725 Eucalyptus grandis HOM05D006407 ORTHO05D008079 1.8e-152 543.1 409 72.9
Ah.11g051020 Amaranthus hybridus HOM05D006407 ORTHO05D008079 6.7e-152 541.2 394 72.3
TWI18G0256 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 3.3e-151 538.9 406 70.9
CSS0030734 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 4.4e-151 538.5 375 75.5
CANSAT01G1280 Cannabis sativa HOM05D006407 ORTHO05D008079 4.4e-151 538.5 363 77.7
Potri.002G251400 Populus trichocarpa HOM05D006407 ORTHO05D008079 5.7e-151 538.1 401 71.3
FAN15G1719 Fragaria x ananassa HOM05D006407 ORTHO05D008079 3.7e-150 535.4 409 70.4
QL09p046404 Quercus lobata HOM05D006407 ORTHO05D008079 1.4e-149 533.5 410 71.5
FvH4_2g17800 Fragaria vesca HOM05D006407 ORTHO05D008079 2.4e-149 532.7 403 70.7
Prupe.8G190300 Prunus persica HOM05D006407 ORTHO05D008079 2.4e-149 532.7 419 69.5
CSS0036527 Camellia sinensis var. sinensis HOM05D006407 ORTHO05D008079 3.1e-149 532.3 375 74.7
FAN27G2095 Fragaria x ananassa HOM05D006407 ORTHO05D008079 3.1e-149 532.3 403 70.2
FAN27G3088 Fragaria x ananassa HOM05D006407 ORTHO05D008079 3.1e-149 532.3 403 70.2
TWI36G1400 Tripterygium wilfordii HOM05D006407 ORTHO05D008079 4.1e-149 531.9 389 71.2
Ciclev10015489m.g Citrus clementina HOM05D006407 ORTHO05D008079 7.0e-149 531.2 368 75.5
FAN24G2889 Fragaria x ananassa HOM05D006407 ORTHO05D008079 7.0e-149 531.2 403 70.5
CsaV3_7G026830 Cucumis sativus L. HOM05D006407 ORTHO05D008079 1.5e-148 530.0 357 75.9
Hma1.2p1_0161F.1_g071410 Hydrangea macrophylla HOM05D006407 ORTHO05D008079 1.5e-148 530.0 364 76.1
TAR636G1997 Trochodendron aralioides HOM05D006407 ORTHO05D008079 1.5e-148 530.0 404 69.3
Sed0008140 Sechium edule HOM05D006407 ORTHO05D008079 5.9e-148 528.1 375 73.6
GSVIVG01006226001 Vitis vinifera HOM05D006407 ORTHO05D008079 5.9e-148 528.1 347 78.7
ClCG09G008210 Citrullus lanatus HOM05D006407 ORTHO05D008079 7.7e-148 527.7 357 75.9
PGR083G0415 Punica granatum HOM05D006407 ORTHO05D008079 7.7e-148 527.7 345 80.6
Sc17g0001660 Simmondsia chinensis HOM05D006407 ORTHO05D008079 1.7e-147 526.6 349 78.2
Aqoxy2G03962 Aquilegia oxysepala HOM05D006407 ORTHO05D008079 2.2e-147 526.2 372 75.3
AUR62008121 Chenopodium quinoa HOM05D006407 ORTHO05D008079 1.5e-146 523.5 411 69.6
Cc01_g16130 Coffea canephora HOM05D006407 ORTHO05D008079 1.9e-146 523.1 394 69.8
EL10Ac5g10625 Beta vulgaris HOM05D006407 ORTHO05D008079 5.5e-146 521.5 375 73.9
Hund02795 Selenicereus undatus HOM05D006407 ORTHO05D008079 1.6e-145 520.0 394 71.1
Oeu057833.1 Olea europaea HOM05D006407 ORTHO05D008079 2.7e-145 519.2 377 72.4
Peaxi162Scf00335g00087 Petunia axillaris HOM05D006407 ORTHO05D008079 2.3e-144 516.2 366 73.2
PSO017G7241 Papaver somniferum HOM05D006407 ORTHO05D008079 3.0e-144 515.8 365 74.5
Sopen09g019480 Solanum pennellii HOM05D006407 ORTHO05D008079 3.0e-144 515.8 352 76.1
MD10G1151900 Malus domestica HOM05D006407 ORTHO05D008079 1.5e-143 513.5 381 71.1
PSO675G1275 Papaver somniferum HOM05D006407 ORTHO05D008079 1.5e-143 513.5 365 74.5
MSTRG.18495 Avicennia marina HOM05D006407 ORTHO05D008079 4.4e-143 511.9 377 73.2
Rhsim13G0052700 Rhododendron simsii HOM05D006407 ORTHO05D008079 4.4e-143 511.9 346 75.1
PGSC0003DMG400013943 Solanum tuberosum HOM05D006407 ORTHO05D008079 5.7e-143 511.5 389 70.4
vmacro02816 Vaccinium macrocarpon HOM05D006407 ORTHO05D008079 9.7e-143 510.8 404 66.8
Gohir.D07G167200 Gossypium hirsutum HOM05D006407 ORTHO05D008079 2.8e-142 509.2 404 69.1
Psat6g036520 Pisum sativum HOM05D006407 ORTHO05D008079 3.7e-142 508.8 363 74.4
Solyc09g056160.4 Solanum lycopersicum HOM05D006407 ORTHO05D008079 2.4e-141 506.1 415 65.8
ECA247G2281 Erigeron canadensis HOM05D006407 ORTHO05D008079 4.1e-141 505.4 359 73.8
Lsat_1_v5_gn_9_16300 Lactuca sativa HOM05D006407 ORTHO05D008079 4.5e-140 501.9 376 72.6
HanXRQChr08g0231421 Helianthus annuus HOM05D006407 ORTHO05D008079 1.7e-139 500.0 352 75.0
Lj1g0005258 Lotus japonicus HOM05D006407 ORTHO05D008079 6.5e-139 498.0 354 74.9
COL.COLO4_26571 Corchorus olitorius HOM05D006407 ORTHO05D008079 2.7e-137 492.7 404 68.3
Glyma.16G083300 Glycine max HOM05D006407 ORTHO05D008079 8.0e-137 491.1 371 71.2
Medtr1g007490 Medicago truncatula HOM05D006407 ORTHO05D008079 8.0e-137 491.1 344 75.9
Glyma.03G089700 Glycine max HOM05D006407 ORTHO05D008079 2.0e-135 486.5 344 75.3
Lalb_Chr07g0194511 Lupinus albus HOM05D006407 ORTHO05D008079 5.7e-135 485.0 394 68.0
Migut.D00736 Erythranthe guttata HOM05D006407 ORTHO05D008079 2.8e-134 482.6 311 79.7
Phvul.008G108300 Phaseolus vulgaris HOM05D006407 ORTHO05D008079 4.8e-134 481.9 364 69.2
arahy.Tifrunner.gnm1.ann1.Q8L9VW Arachis hypogaea HOM05D006407 ORTHO05D008079 9.1e-133 477.6 360 70.6
arahy.Tifrunner.gnm1.ann1.FHDW0K Arachis hypogaea HOM05D006407 ORTHO05D008079 1.2e-132 477.2 360 70.6
HPP92_024258 Vanilla planifolia HOM05D006407 ORTHO05D008079 1.2e-132 477.2 318 76.7
Lj1C101T0 Lonicera japonica HOM05D006407 ORTHO05D008079 2.7e-132 476.1 352 72.2
ATR0686G167 Amborella trichopoda HOM05D006407 ORTHO05D008079 6.5e-131 471.5 352 68.2
Zm00001eb169280 Zea mays HOM05D006407 ORTHO05D008079 1.2e-129 467.2 318 73.3
Ca_12772_v3 Cicer arietinum L. HOM05D006407 ORTHO05D008079 4.7e-129 465.3 296 80.1
Nitab4.5_0003859g0020 Nicotiana tabacum HOM05D001236 ORTHO05D001090 4.7e-129 465.3 370 69.2
unitig_64.g29771 Utricularia gibba HOM05D006407 ORTHO05D008079 4.0e-128 462.2 319 74.0
Nitab4.5_0000038g0130 Nicotiana tabacum HOM05D006407 ORTHO05D008079 1.5e-127 460.3 384 66.7
SalBow6G2639 Salvia bowleyana HOM05D006407 ORTHO05D008079 4.1e-125 452.2 334 71.0
Sabra02G0191100 Salix brachista HOM05D006407 ORTHO05D008079 8.6e-123 444.5 326 70.9
Atru.chr6.3545 Acer truncatum HOM05D006407 ORTHO05D008079 7.2e-122 441.4 302 75.8
SGA_v2.0_scaffold29G12072 Striga asiatica HOM05D006407 ORTHO05D008079 2.2e-118 429.9 451 56.8
VMungo1383G2551 Vigna mungo HOM05D006407 ORTHO05D008079 3.3e-114 416.0 364 63.2
Os11g0425300 Oryza sativa ssp. japonica HOM05D006407 ORTHO05D008079 1.2e-113 414.1 285 73.7
SEGI_39839 Sequoiadendron giganteum HOM05D006407 ORTHO05D008079 5.2e-104 382.1 326 61.3
CDE09G0438 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 2.1e-100 370.2 239 79.1
BcaC06g30794 Brassica carinata HOM05D006407 ORTHO05D008079 1.7e-99 367.1 480 50.2
BolC7t44437H Brassica oleracea HOM05D006407 ORTHO05D008079 3.2e-93 346.3 384 59.6
C07p39170 Brassica napus HOM05D006407 ORTHO05D008079 3.1e-88 329.7 371 58.2
Duzib138G1048 Durio zibethinus HOM05D006407 ORTHO05D008079 1.6e-81 307.4 423 47.0
Nn1g08257 Nelumbo nucifera HOM05D006407 ORTHO05D008079 6.2e-81 305.4 240 68.8
unitig_62.g23866 Utricularia gibba HOM05D006407 ORTHO05D008079 2.0e-79 300.4 291 58.8
HPP92_024262 Vanilla planifolia HOM05D006407 ORTHO05D008079 2.6e-79 300.1 201 75.1
Mapoly0125s0038 Marchantia polymorpha HOM05D006407 ORTHO05D008079 9.9e-79 298.1 326 47.2
SMO367G1011 Selaginella moellendorffii HOM05D006407 ORTHO05D008079 1.3e-78 297.7 317 49.8
Pp3c19_21450 Physcomitrium patens HOM05D006407 ORTHO05D008079 5.6e-74 282.3 327 45.9
AagrBONN_evm.TU.Sc2ySwM_368.2294 Anthoceros agrestis HOM05D006407 ORTHO05D008079 6.9e-72 275.4 272 53.7
MBI11_g07407_MAGBIO Magnolia biondii HOM05D006407 ORTHO05D003073 1.4e-69 267.7 907 29.0
Nn1g08232 Nelumbo nucifera HOM05D006407 ORTHO05D008079 5.8e-63 245.7 158 77.8
AUR62028699 Chenopodium quinoa HOM05D006407 ORTHO05D008079 1.0e-54 218.4 143 79.0
BraA06t26831Z Brassica rapa HOM05D006407 ORTHO05D008079 8.7e-51 205.3 128 83.6
DCAR_004768 Daucus carota HOM05D006407 ORTHO05D008079 2.9e-46 190.3 157 66.9
A06p39160 Brassica napus HOM05D006407 ORTHO05D008079 2.1e-44 184.1 177 61.6
Migut.D00733 Erythranthe guttata HOM05D006407 ORTHO05D008079 8.2e-41 172.2 110 80.9
CBR_g12604 Chara braunii HOM05D001724 ORTHO05D007284 2.6e-34 150.6 325 33.5
CDE02G0544 Ceratophyllum demersum HOM05D006407 ORTHO05D008079 1.8e-24 117.9 82 72.0
Lsat_1_v5_gn_9_60420 Lactuca sativa HOM05D001780 ORTHO05D008079 2.2e-14 84.3 46 87.0
MCO11G451 Micromonas commoda HOM05D006407 ORTHO05D008079 1.5e-13 81.6 262 26.0
arahy.Tifrunner.gnm1.ann1.91BFZF Arachis hypogaea HOM05D006407 ORTHO05D008079 1.9e-13 81.3 81 55.6
Oeu032606.1 Olea europaea HOM05D006407 ORTHO05D008079 5.5e-13 79.7 48 79.2
Cre09.g393800 Chlamydomonas reinhardtii HOM05D006407 ORTHO05D008079 2.7e-12 77.4 274 28.5
MD05G1159200 Malus domestica HOM05D006407 ORTHO05D008079 6.1e-12 76.3 49 75.5
arahy.Tifrunner.gnm1.ann1.6HQ4SR Arachis hypogaea HOM05D006407 ORTHO05D008079 1.1e-08 65.5 74 51.4
MD05G1159400 Malus domestica HOM05D006407 ORTHO05D008079 1.3e-06 58.5 68 51.5


User provided reference genes

Program Settings