Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0792 Capsella rubella HOM05D006455 ORTHO05D008098 1.1e-282 976.1 518 100.0
AL8G21110 Arabidopsis lyrata HOM05D006455 ORTHO05D008098 1.1e-236 823.2 518 85.7
AT5G48340 Arabidopsis thaliana HOM05D006455 ORTHO05D008098 2.4e-234 815.5 518 85.5
Sp2g18700 Schrenkiella parvula HOM05D006455 ORTHO05D008098 2.6e-228 795.4 518 79.9
CARHR183890 Cardamine hirsuta HOM05D006455 ORTHO05D008098 8.8e-221 770.4 518 81.1
BcaC06g30805 Brassica carinata HOM05D006455 ORTHO05D008098 2.2e-219 765.8 519 79.0
A06p39230 Brassica napus HOM05D006455 ORTHO05D008098 1.7e-216 756.1 520 79.0
BolC7t44431H Brassica oleracea HOM05D006455 ORTHO05D008098 2.3e-216 755.7 523 78.4
BraA06t26837Z Brassica rapa HOM05D006455 ORTHO05D008098 5.0e-216 754.6 522 78.7
C07p39110 Brassica napus HOM05D006455 ORTHO05D008098 7.3e-215 750.7 520 77.5
BcaC06g30808 Brassica carinata HOM05D006455 ORTHO05D008098 2.1e-214 749.2 520 77.5
Thhalv10003907m.g Eutrema salsugineum HOM05D006455 ORTHO05D008098 1.8e-210 736.1 493 79.7
Aa31LG5G9090 Aethionema arabicum HOM05D006455 ORTHO05D008098 6.0e-201 704.5 512 73.0
TAR362G0985 Trochodendron aralioides HOM05D006455 ORTHO05D008098 7.9e-153 544.7 519 55.3
Thecc.01G205700 Theobroma cacao HOM05D006455 ORTHO05D008098 2.5e-151 539.7 516 55.6
Haze_08072 Corylus avellana HOM05D006455 ORTHO05D008098 5.9e-148 528.5 517 55.3
Manes.12G057502 Manihot esculenta HOM05D006455 ORTHO05D008098 1.0e-147 527.7 517 54.7
Manes.12G057904 Manihot esculenta HOM05D006455 ORTHO05D008098 2.9e-147 526.2 517 54.5
Cfa012584 Carpinus fangiana HOM05D006455 ORTHO05D008098 7.2e-146 521.5 517 54.4
Gohir.A11G144500 Gossypium hirsutum HOM05D006455 ORTHO05D008098 1.2e-145 520.8 525 53.7
Gorai.007G161800 Gossypium raimondii HOM05D006455 ORTHO05D008098 1.2e-145 520.8 525 53.5
CsaV3_3G001300 Cucumis sativus L. HOM05D006455 ORTHO05D008098 1.0e-144 517.7 526 52.7
TWI75G0274 Tripterygium wilfordii HOM05D006455 ORTHO05D008098 1.8e-144 516.9 519 51.1
GSVIVG01001915001 Vitis vinifera HOM05D006455 ORTHO05D008098 2.5e-143 513.1 518 52.5
Manes.12G057700 Manihot esculenta HOM05D006455 ORTHO05D008098 1.6e-142 510.4 517 53.8
Manes.12G057901 Manihot esculenta HOM05D006455 ORTHO05D008098 1.6e-142 510.4 517 53.8
Rhsim13G0055500 Rhododendron simsii HOM05D006455 ORTHO05D008098 2.0e-140 503.4 480 54.6
CiPaw.12G071600 Carya illinoinensis HOM05D006455 ORTHO05D008098 2.6e-140 503.1 516 51.9
Atru.chr6.3495 Acer truncatum HOM05D006455 ORTHO05D008098 4.5e-140 502.3 518 55.8
Eucgr.K02350 Eucalyptus grandis HOM05D006455 ORTHO05D008098 4.5e-140 502.3 522 54.6
Ciclev10014895m.g Citrus clementina HOM05D006455 ORTHO05D008098 8.5e-139 498.0 519 54.3
Cpa.g.sc8.27 Carica papaya HOM05D006455 ORTHO05D008098 9.4e-138 494.6 500 56.2
Prupe.2G049600 Prunus persica HOM05D006455 ORTHO05D008098 1.2e-137 494.2 516 50.4
COL.COLO4_29922 Corchorus olitorius HOM05D006455 ORTHO05D008098 1.4e-136 490.7 528 51.9
PGR044G2428 Punica granatum HOM05D006455 ORTHO05D008098 3.3e-135 486.1 520 51.5
MD02G1270700 Malus domestica HOM05D006455 ORTHO05D008098 4.4e-135 485.7 517 49.5
Nn1g09557 Nelumbo nucifera HOM05D006455 ORTHO05D008098 1.3e-134 484.2 514 50.6
CANSAT21G2240 Cannabis sativa HOM05D006455 ORTHO05D008098 5.3e-133 478.8 517 49.7
ClCG10G001240 Citrullus lanatus HOM05D006455 ORTHO05D008098 6.9e-133 478.4 502 55.0
MELO3C013818.2 Cucumis melo HOM05D006455 ORTHO05D008098 1.2e-132 477.6 515 53.4
Aqoxy2G04132 Aquilegia oxysepala HOM05D006455 ORTHO05D008098 3.4e-132 476.1 517 52.0
Migut.D00764 Erythranthe guttata HOM05D006455 ORTHO05D008098 3.8e-131 472.6 518 51.9
RcHm_v2.0_Chr7g0228451 Rosa chinensis HOM05D006455 ORTHO05D008098 3.8e-131 472.6 525 50.7
FvH4_5g32260 Fragaria vesca HOM05D006455 ORTHO05D008098 4.2e-130 469.2 521 48.6
CSS0002127 Camellia sinensis var. sinensis HOM05D006455 ORTHO05D008098 7.2e-130 468.4 440 54.3
Nitab4.5_0006514g0010 Nicotiana tabacum HOM05D006455 ORTHO05D008098 1.6e-129 467.2 514 49.8
Potri.014G174300 Populus trichocarpa HOM05D006455 ORTHO05D008098 6.1e-129 465.3 518 51.7
Lalb_Chr16g0391751 Lupinus albus HOM05D006455 ORTHO05D008098 7.9e-129 464.9 516 50.8
FAN18G4165 Fragaria x ananassa HOM05D006455 ORTHO05D008098 1.4e-128 464.2 521 48.2
Nitab4.5_0000077g0170 Nicotiana tabacum HOM05D006455 ORTHO05D008098 5.2e-128 462.2 525 49.3
ECA248G0009 Erigeron canadensis HOM05D006455 ORTHO05D008098 2.6e-127 459.9 518 50.4
FAN13G0315 Fragaria x ananassa HOM05D006455 ORTHO05D008098 2.2e-126 456.8 512 47.9
QL12p000818 Quercus lobata HOM05D006455 ORTHO05D008098 2.8e-126 456.4 498 49.6
Sed0000077 Sechium edule HOM05D006455 ORTHO05D008098 1.1e-125 454.5 501 50.3
AUR62028628 Chenopodium quinoa HOM05D006455 ORTHO05D008098 2.4e-125 453.4 513 47.8
HanXRQChr01g0014041 Helianthus annuus HOM05D006455 ORTHO05D008098 3.1e-125 453.0 520 48.7
Lj1A106T21 Lonicera japonica HOM05D006455 ORTHO05D008098 7.0e-125 451.8 504 51.0
MSTRG.18514 Avicennia marina HOM05D006455 ORTHO05D008098 2.6e-124 449.9 516 48.6
HanXRQChr01g0013871 Helianthus annuus HOM05D006455 ORTHO05D008098 4.5e-124 449.1 516 48.6
Sopen09g013040 Solanum pennellii HOM05D006455 ORTHO05D008098 1.3e-123 447.6 515 48.0
Lsat_1_v5_gn_5_176300 Lactuca sativa HOM05D006455 ORTHO05D008098 2.2e-123 446.8 526 47.3
Sabra14G0133600 Salix brachista HOM05D006455 ORTHO05D008098 2.9e-123 446.4 521 50.5
Hund02815 Selenicereus undatus HOM05D006455 ORTHO05D008098 2.9e-123 446.4 512 46.9
AUR62008053 Chenopodium quinoa HOM05D006455 ORTHO05D008098 6.5e-123 445.3 511 46.2
Sc05g0001610 Simmondsia chinensis HOM05D006455 ORTHO05D008098 6.5e-123 445.3 519 46.8
Cc04_g10320 Coffea canephora HOM05D006455 ORTHO05D008098 1.9e-122 443.7 519 46.1
SGA_v2.0_scaffold158G37512 Striga asiatica HOM05D006455 ORTHO05D008098 1.4e-120 437.6 536 44.4
FAN08G0013 Fragaria x ananassa HOM05D006455 ORTHO05D004776 2.3e-120 436.8 495 49.5
PSO210G7796 Papaver somniferum HOM05D006455 ORTHO05D008098 3.3e-119 433.0 514 49.8
TPR.G31161 Trifolium pratense HOM05D006455 ORTHO05D008098 4.4e-119 432.6 528 47.7
vmacro02844 Vaccinium macrocarpon HOM05D006455 ORTHO05D008098 5.7e-119 432.2 507 49.3
PSO210G0904 Papaver somniferum HOM05D006455 ORTHO05D008098 1.8e-117 427.2 512 49.0
Psat4g108080 Pisum sativum HOM05D006455 ORTHO05D008098 5.3e-117 425.6 516 44.6
Peaxi162Scf00315g00814 Petunia axillaris HOM05D006455 ORTHO05D008098 1.6e-116 424.1 495 48.1
arahy.Tifrunner.gnm1.ann1.U8H9H1 Arachis hypogaea HOM05D006455 ORTHO05D008098 2.7e-116 423.3 497 48.3
arahy.Tifrunner.gnm1.ann1.E0JCGG Arachis hypogaea HOM05D006455 ORTHO05D008098 1.7e-115 420.6 496 48.0
Glyma.16G105200 Glycine max HOM05D006455 ORTHO05D008098 3.8e-115 419.5 504 47.0
Lj4g0021895 Lotus japonicus HOM05D006455 ORTHO05D008098 6.5e-115 418.7 516 47.3
Ca_30349_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 3.2e-114 416.4 518 46.1
Gohir.D11G150900 Gossypium hirsutum HOM05D006455 ORTHO05D008098 1.4e-112 411.0 401 53.1
Manes.12G057900 Manihot esculenta HOM05D006455 ORTHO05D008098 1.4e-112 411.0 495 46.5
unitig_0.g222 Utricularia gibba HOM05D006455 ORTHO05D008098 3.0e-112 409.8 515 43.7
VMungo0251G3325 Vigna mungo HOM05D006455 ORTHO05D008098 8.8e-112 408.3 514 48.6
Solyc09g020150.4 Solanum lycopersicum HOM05D006455 ORTHO05D008098 1.2e-111 407.9 497 46.3
Manes.12G058105 Manihot esculenta HOM05D006455 ORTHO05D008098 8.3e-110 401.7 495 46.1
ATR0743G062 Amborella trichopoda HOM05D006455 ORTHO05D008098 1.1e-109 401.4 522 43.7
Phvul.003G279900 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 1.4e-109 401.0 508 49.2
Os01g0897100 Oryza sativa ssp. japonica HOM05D006455 ORTHO05D008098 1.0e-107 394.8 491 46.4
SHI10210 Sapria himalayana HOM05D006455 ORTHO05D008098 1.0e-107 394.8 525 48.4
Ca_22482_v3 Cicer arietinum L. HOM05D006455 ORTHO05D008098 1.1e-106 391.3 500 45.8
EL10Ac5g10573 Beta vulgaris HOM05D006455 ORTHO05D008098 2.8e-105 386.7 394 51.3
Medtr8g071270 Medicago truncatula HOM05D006455 ORTHO05D008098 1.4e-104 384.4 504 45.6
Actinidia23129 Actinidia chinensis HOM05D006455 ORTHO05D008098 1.8e-104 384.0 508 47.0
Zm00001eb144730 Zea mays HOM05D006455 ORTHO05D008098 4.1e-101 372.9 498 45.2
Ah.11g050710 Amaranthus hybridus HOM05D006455 ORTHO05D008098 7.0e-101 372.1 512 43.0
DCAR_000439 Daucus carota HOM05D006455 ORTHO05D008098 2.7e-100 370.2 349 52.7
MBI07_g34151_MAGBIO Magnolia biondii HOM05D006455 ORTHO05D008098 1.5e-98 364.4 465 48.4
SEGI_16096 Sequoiadendron giganteum HOM05D006455 ORTHO05D008098 2.1e-97 360.5 525 41.7
HPP92_001271 Vanilla planifolia HOM05D006455 ORTHO05D008098 1.1e-85 321.6 338 48.2
Manes.12G058904 Manihot esculenta HOM05D006455 ORTHO05D008098 6.6e-83 312.4 270 55.9
Dinv07639 Davidia involucrata HOM05D006455 ORTHO05D008098 1.3e-78 298.1 393 42.2
PGSC0003DMG402020303 Solanum tuberosum HOM05D006455 ORTHO05D008098 1.1e-72 278.5 347 45.2
Manes.12G057503 Manihot esculenta HOM05D006455 ORTHO05D008098 1.7e-70 271.2 198 63.6
Manes.12G057505 Manihot esculenta HOM05D006455 ORTHO05D008098 1.7e-70 271.2 198 63.6
Oeu030353.1 Olea europaea HOM05D006455 ORTHO05D008098 1.3e-67 261.5 333 46.5
Mapoly0109s0061 Marchantia polymorpha HOM05D006455 ORTHO05D008098 1.6e-65 254.6 547 35.8
SMO200G0077 Selaginella moellendorffii HOM05D006455 ORTHO05D008098 7.8e-60 235.7 468 35.9
HPP92_001254 Vanilla planifolia HOM05D006455 ORTHO05D008098 1.0e-59 235.3 223 53.4
Pp3c10_13370 Physcomitrium patens HOM05D006455 ORTHO05D008098 1.3e-59 235.0 535 32.3
CDE05G1197 Ceratophyllum demersum HOM05D006455 ORTHO05D008098 5.1e-51 206.5 215 47.9
AagrBONN_evm.TU.Sc2ySwM_228.5553 Anthoceros agrestis HOM05D006455 ORTHO05D008098 4.3e-50 203.4 495 29.9
CBR_g48756 Chara braunii HOM05D006455 ORTHO05D000497 1.3e-41 175.3 497 32.8
Manes.12G057504 Manihot esculenta HOM05D006455 ORTHO05D008098 1.5e-31 141.7 195 44.1
Zm00001eb128090 Zea mays HOM05D006455 ORTHO05D008098 5.9e-23 113.2 175 39.4
Manes.12G060108 Manihot esculenta HOM05D006455 ORTHO05D008098 8.5e-22 109.4 172 43.0
EL10Ac5g10574 Beta vulgaris HOM05D006455 ORTHO05D008098 7.9e-20 102.8 119 47.9
Zm00001eb128100 Zea mays HOM05D006455 ORTHO05D008098 7.9e-20 102.8 146 42.5
Zm00001eb274660 Zea mays HOM05D006455 ORTHO05D008098 3.0e-19 100.9 146 41.8
Oeu030354.1 Olea europaea HOM05D006455 ORTHO05D008098 1.3e-17 95.5 119 47.1
Cre03.g197250 Chlamydomonas reinhardtii HOM05D006455 ORTHO05D008098 4.1e-16 90.5 224 30.4
PGSC0003DMG400020304 Solanum tuberosum HOM05D006455 ORTHO05D008098 2.9e-14 84.3 119 43.7
Phvul.003G297266 Phaseolus vulgaris HOM05D006455 ORTHO05D008098 8.0e-12 76.3 125 41.6
Oeu003682.1 Olea europaea HOM05D006455 ORTHO05D008098 1.8e-08 65.1 119 39.5


User provided reference genes

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