Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0791 Capsella rubella HOM05D005992 ORTHO05D007476 3.4e-62 241.5 122 100.0
AL8G21060 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 5.8e-46 187.6 119 84.9
AT5G48335 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 6.4e-45 184.1 119 84.0
CARHR183920 Cardamine hirsuta HOM05D005992 ORTHO05D007476 7.3e-41 170.6 119 80.7
Thhalv10021713m.g Eutrema salsugineum HOM05D005992 ORTHO05D007476 1.0e-26 123.6 106 61.3
Sp3g06520 Schrenkiella parvula HOM05D005992 ORTHO05D007476 5.1e-26 121.3 106 59.4
THA.LOC104819021 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 6.6e-26 120.9 110 60.0
THA.LOC104822452 Tarenaya hassleriana HOM05D005992 ORTHO05D007476 4.3e-25 118.2 119 58.0
BraA05t22792Z Brassica rapa HOM05D005992 ORTHO05D007476 8.1e-24 114.0 106 58.5
A05p40610 Brassica napus HOM05D005992 ORTHO05D007476 2.9e-21 105.5 104 54.8
AT3G07580 Arabidopsis thaliana HOM05D005992 ORTHO05D007476 1.1e-20 103.6 108 54.6
AL3G18940 Arabidopsis lyrata HOM05D005992 ORTHO05D007476 1.4e-20 103.2 108 53.7
FAN18G0660 Fragaria x ananassa HOM05D005992 ORTHO05D007476 1.4e-20 103.2 141 46.8
FvH4_5g18680 Fragaria vesca HOM05D005992 ORTHO05D007476 2.4e-20 102.4 141 46.8
FAN04G1498 Fragaria x ananassa HOM05D005992 ORTHO05D007476 5.4e-20 101.3 141 45.4
FAN08G0048 Fragaria x ananassa HOM05D005992 ORTHO05D007476 9.3e-20 100.5 141 45.4
FAN13G0560 Fragaria x ananassa HOM05D005992 ORTHO05D007476 2.7e-19 99.0 141 44.7
C05p59720 Brassica napus HOM05D005992 ORTHO05D007476 3.5e-19 98.6 102 52.9
BolC5t34626H Brassica oleracea HOM05D005992 ORTHO05D007476 3.5e-19 98.6 102 52.9
Prupe.8G267200 Prunus persica HOM05D005992 ORTHO05D007476 3.9e-18 95.1 143 44.8
CARHR082280 Cardamine hirsuta HOM05D005992 ORTHO05D007476 8.7e-18 94.0 106 55.7
COL.COLO4_19718 Corchorus olitorius HOM05D005992 ORTHO05D007476 7.3e-17 90.9 131 45.8
Lsat_1_v5_gn_9_15721 Lactuca sativa HOM05D005992 ORTHO05D007476 9.6e-17 90.5 130 45.4
Thhalv10005690m.g Eutrema salsugineum HOM05D005992 ORTHO05D007476 2.8e-16 89.0 71 76.1
HanXRQChr08g0230801 Helianthus annuus HOM05D005992 ORTHO05D007476 2.8e-16 89.0 131 44.3
Potri.014G172600 Populus trichocarpa HOM05D005992 ORTHO05D007476 2.8e-16 89.0 146 44.5
AUR62017763 Chenopodium quinoa HOM05D005992 ORTHO05D007476 3.6e-16 88.6 142 43.0
Duzib133G0028 Durio zibethinus HOM05D005992 ORTHO05D007476 3.6e-16 88.6 133 44.4
Cpa.g.sc8.7 Carica papaya HOM05D005992 ORTHO05D007476 4.8e-16 88.2 127 44.9
Nn7g37421 Nelumbo nucifera HOM05D005992 ORTHO05D007476 4.8e-16 88.2 134 46.3
MD03G1298800 Malus domestica HOM05D005992 ORTHO05D007476 1.1e-15 87.0 141 44.0
PSO357G0365 Papaver somniferum HOM05D005992 ORTHO05D007476 1.1e-15 87.0 127 46.5
ECA247G1400 Erigeron canadensis HOM05D005992 ORTHO05D007476 1.4e-15 86.7 131 42.7
Carub.0003s0715 Capsella rubella HOM05D005992 ORTHO05D007476 1.8e-15 86.3 106 50.0
Dinv28773 Davidia involucrata HOM05D005992 ORTHO05D007476 2.4e-15 85.9 144 42.4
BcaC05g29553 Brassica carinata HOM05D005992 ORTHO05D007476 4.0e-15 85.1 95 51.6
RcHm_v2.0_Chr7g0176831 Rosa chinensis HOM05D005992 ORTHO05D007476 4.0e-15 85.1 140 45.0
CSS0023701 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 6.9e-15 84.3 143 43.4
CSS0036227 Camellia sinensis var. sinensis HOM05D005992 ORTHO05D007476 6.9e-15 84.3 143 43.4
BcaC04g23782 Brassica carinata HOM05D005992 ORTHO05D007476 2.0e-14 82.8 89 55.1
Ah.04g163410 Amaranthus hybridus HOM05D005992 ORTHO05D007476 2.6e-14 82.4 144 41.0
Hma1.2p1_0834F.1_g225730 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 3.4e-14 82.0 135 40.0
Manes.12G055803 Manihot esculenta HOM05D005992 ORTHO05D007476 3.4e-14 82.0 137 43.1
TWI75G1816 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 3.4e-14 82.0 117 45.3
C09p04700 Brassica napus HOM05D005992 ORTHO05D007476 4.5e-14 81.6 71 59.2
PSO170G4201 Papaver somniferum HOM05D005992 ORTHO05D007476 4.5e-14 81.6 124 45.2
PGSC0003DMG400027679 Solanum tuberosum HOM05D005992 ORTHO05D007476 4.5e-14 81.6 133 44.4
HPP92_004514 Vanilla planifolia HOM05D005992 ORTHO05D007476 4.5e-14 81.6 119 43.7
Sc10g0006540 Simmondsia chinensis HOM05D005992 ORTHO05D007476 5.8e-14 81.3 122 46.7
Sopen06g034190 Solanum pennellii HOM05D005992 ORTHO05D007476 5.8e-14 81.3 133 45.1
PGR044G1143 Punica granatum HOM05D005992 ORTHO05D007476 1.3e-13 80.1 119 49.6
CiPaw.13G059000 Carya illinoinensis HOM05D005992 ORTHO05D007476 2.2e-13 79.3 129 44.2
Hma1.2p1_0161F.1_g071860 Hydrangea macrophylla HOM05D005992 ORTHO05D007476 2.2e-13 79.3 132 41.7
GSVIVG01004128001 Vitis vinifera HOM05D005992 ORTHO05D007476 2.2e-13 79.3 137 44.5
Thecc.01G203400 Theobroma cacao HOM05D005992 ORTHO05D007476 2.9e-13 79.0 133 43.6
TWI36G1335 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 3.8e-13 78.6 117 43.6
Solyc06g082830.3 Solanum lycopersicum HOM05D005992 ORTHO05D007476 4.9e-13 78.2 126 43.7
Manes.13G058400 Manihot esculenta HOM05D005992 ORTHO05D007476 6.4e-13 77.8 143 41.3
Os02g0609400 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 1.1e-12 77.0 125 43.2
CDE07G1966 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 1.4e-12 76.6 123 39.0
CDE04G1688 Ceratophyllum demersum HOM05D005992 ORTHO05D007476 1.9e-12 76.3 124 39.5
Ciclev10016954m.g Citrus clementina HOM05D005992 ORTHO05D007476 1.9e-12 76.3 129 43.4
Peaxi162Scf00390g00125 Petunia axillaris HOM05D005992 ORTHO05D007476 1.9e-12 76.3 137 43.1
EL10Ac9g23025 Beta vulgaris HOM05D005992 ORTHO05D007476 3.2e-12 75.5 139 41.0
Duzib138G0279 Durio zibethinus HOM05D005992 ORTHO05D007476 3.2e-12 75.5 142 38.0
TWI18G0378 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 3.2e-12 75.5 117 43.6
Atru.chr6.3466 Acer truncatum HOM05D005992 ORTHO05D007476 4.2e-12 75.1 131 43.5
TWI36G0694 Tripterygium wilfordii HOM05D005992 ORTHO05D007476 4.2e-12 75.1 117 41.9
Gohir.A11G146200 Gossypium hirsutum HOM05D005992 ORTHO05D007476 5.4e-12 74.7 134 39.6
Gohir.D11G152400 Gossypium hirsutum HOM05D005992 ORTHO05D007476 5.4e-12 74.7 134 39.6
Gorai.007G163000 Gossypium raimondii HOM05D005992 ORTHO05D007476 5.4e-12 74.7 134 39.6
CAN.G874.50 Capsicum annuum HOM05D005992 ORTHO05D007476 2.1e-11 72.8 134 41.0
Nitab4.5_0008751g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 2.7e-11 72.4 139 40.3
Nitab4.5_0001348g0200 Nicotiana tabacum HOM05D005992 ORTHO05D007476 3.5e-11 72.0 139 40.3
QL09p044779 Quercus lobata HOM05D005992 ORTHO05D007476 3.5e-11 72.0 142 39.4
MBI07_g44661_MAGBIO Magnolia biondii HOM05D005992 ORTHO05D007476 4.6e-11 71.6 120 42.5
Aa31LG5G18140 Aethionema arabicum HOM05D005992 ORTHO05D007476 7.9e-11 70.9 42 69.0
Nitab4.5_0005967g0050 Nicotiana tabacum HOM05D005992 ORTHO05D007476 1.3e-10 70.1 132 38.6
Rhsim01G0246100 Rhododendron simsii HOM05D005992 ORTHO05D007476 1.3e-10 70.1 60 53.3
Nitab4.5_0009028g0010 Nicotiana tabacum HOM05D005992 ORTHO05D007476 2.3e-10 69.3 138 38.4
vmacro14669 Vaccinium macrocarpon HOM05D005992 ORTHO05D007476 3.9e-10 68.6 191 30.9
Lj1C108T9 Lonicera japonica HOM05D005992 ORTHO05D007476 5.1e-10 68.2 60 55.0
MSTRG.18519 Avicennia marina HOM05D005992 ORTHO05D007476 6.7e-10 67.8 141 38.3
CANSAT11G0965 Cannabis sativa HOM05D005992 ORTHO05D007476 6.7e-10 67.8 135 37.8
Migut.D00757 Erythranthe guttata HOM05D005992 ORTHO05D007476 6.7e-10 67.8 142 38.7
Eucgr.K02345 Eucalyptus grandis HOM05D005992 ORTHO05D007476 6.7e-10 67.8 136 38.2
SGA_v2.0_scaffold8G04484 Striga asiatica HOM05D005992 ORTHO05D007476 8.7e-10 67.4 140 40.0
Glyma.06G002700 Glycine max HOM05D005992 ORTHO05D007476 1.5e-09 66.6 124 38.7
Cc01_g15730 Coffea canephora HOM05D005992 ORTHO05D007476 3.3e-09 65.5 142 40.8
ATR0743G072 Amborella trichopoda HOM05D005992 ORTHO05D007476 4.3e-09 65.1 90 42.2
Aqoxy2G04184 Aquilegia oxysepala HOM05D001906 ORTHO05D002083 4.3e-09 65.1 134 35.1
unitig_60.g25570 Utricularia gibba HOM05D005992 ORTHO05D007476 4.3e-09 65.1 121 38.0
Zm00001eb246760 Zea mays HOM05D005992 ORTHO05D007476 5.6e-09 64.7 129 38.0
AUR62032915 Chenopodium quinoa HOM05D005992 ORTHO05D007476 7.4e-09 64.3 110 37.3
CiPaw.14G047400 Carya illinoinensis HOM05D005992 ORTHO05D007476 9.6e-09 63.9 106 42.5
Phvul.009G118300 Phaseolus vulgaris HOM05D005992 ORTHO05D007476 1.3e-08 63.5 115 40.0
VMungo1309G0397 Vigna mungo HOM05D005992 ORTHO05D007476 1.3e-08 63.5 119 40.3
Os02g0599500 Oryza sativa ssp. japonica HOM05D005992 ORTHO05D007476 1.6e-08 63.2 60 55.0
Aqoxy4G02934 Aquilegia oxysepala HOM05D001961 ORTHO05D002286 2.1e-08 62.8 104 42.3
Glyma.04G002700 Glycine max HOM05D005992 ORTHO05D007476 2.1e-08 62.8 129 38.8
Lj1g0017920 Lotus japonicus HOM05D005992 ORTHO05D007476 2.8e-08 62.4 111 39.6
Lalb_Chr11g0061201 Lupinus albus HOM05D005992 ORTHO05D007476 3.7e-08 62.0 111 41.4
Psat5g001840 Pisum sativum HOM05D005992 ORTHO05D007476 3.7e-08 62.0 115 39.1
Medtr3g118100 Medicago truncatula HOM05D005992 ORTHO05D007476 8.1e-08 60.8 131 38.2
Oeu058218.1 Olea europaea HOM05D005992 ORTHO05D007476 1.1e-07 60.5 142 37.3
Sopen09g012660 Solanum pennellii HOM05D005992 ORTHO05D007476 6.9e-07 57.8 56 48.2
A09p04390 Brassica napus HOM05D005992 ORTHO05D007476 9.0e-07 57.4 40 67.5
BraA09t36076Z Brassica rapa HOM05D005992 ORTHO05D007476 9.0e-07 57.4 40 67.5
DCAR_018600 Daucus carota HOM05D005992 ORTHO05D007476 4.5e-06 55.1 169 31.4
TPR.G38510 Trifolium pratense HOM05D005992 ORTHO05D007476 7.6e-06 54.3 47 57.4


User provided reference genes

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