Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0781 Capsella rubella HOM05D005155 ORTHO05D006266 3.4e-167 591.7 313 100.0
AL8G20970 Arabidopsis lyrata HOM05D005155 ORTHO05D006266 9.6e-146 520.4 313 88.2
AT5G48240 Arabidopsis thaliana HOM05D005155 ORTHO05D006266 1.9e-141 506.1 315 87.3
Thhalv10004636m.g Eutrema salsugineum HOM05D005155 ORTHO05D006266 2.0e-135 486.1 316 81.3
Sp2g18610 Schrenkiella parvula HOM05D005155 ORTHO05D006266 2.2e-134 482.6 316 82.3
A09p04360 Brassica napus HOM05D005155 ORTHO05D006266 8.2e-129 464.2 318 78.6
C09p04670 Brassica napus HOM05D005155 ORTHO05D006266 2.5e-125 452.6 318 77.7
BcaB04g19566 Brassica carinata HOM05D005155 ORTHO05D006266 3.0e-123 445.7 321 76.6
BolC9t53395H Brassica oleracea HOM05D005155 ORTHO05D006266 9.7e-122 440.7 348 71.6
Aa31LG4G7530 Aethionema arabicum HOM05D005155 ORTHO05D006266 2.8e-121 439.1 316 75.3
BcaC04g23785 Brassica carinata HOM05D005155 ORTHO05D006266 3.7e-121 438.7 320 75.6
BraA09t36073Z Brassica rapa HOM05D005155 ORTHO05D006266 8.2e-121 437.6 353 70.3
C07p38970 Brassica napus HOM05D005155 ORTHO05D006266 9.1e-120 434.1 321 76.0
CARHR286520 Cardamine hirsuta HOM05D005155 ORTHO05D006266 2.4e-112 409.5 319 74.3
BcaC06g30816 Brassica carinata HOM05D005155 ORTHO05D006266 1.0e-107 394.0 318 70.1
A06p39310 Brassica napus HOM05D005155 ORTHO05D006266 3.5e-103 379.0 319 68.7
CARHR218550 Cardamine hirsuta HOM05D005155 ORTHO05D006266 1.9e-101 373.2 265 78.1
BraA06t26845Z Brassica rapa HOM05D005155 ORTHO05D006266 2.2e-97 359.8 358 61.2
THA.LOC104802634 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 8.6e-86 321.2 308 62.3
THA.LOC104819027 Tarenaya hassleriana HOM05D005155 ORTHO05D006266 8.0e-84 314.7 314 59.2
Cpa.g.sc136.55 Carica papaya HOM05D005155 ORTHO05D006266 2.6e-82 309.7 315 59.4
CSS0035525 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 5.0e-78 295.4 323 55.7
Actinidia20603 Actinidia chinensis HOM05D005155 ORTHO05D006266 2.1e-76 290.0 325 56.3
BolC7t44418H Brassica oleracea HOM05D005155 ORTHO05D006266 6.2e-76 288.5 265 67.2
Gohir.D11G154600 Gossypium hirsutum HOM05D005155 ORTHO05D006266 8.0e-76 288.1 304 55.9
Ciclev10015959m.g Citrus clementina HOM05D005155 ORTHO05D006266 3.1e-75 286.2 321 54.8
Dinv21322 Davidia involucrata HOM05D005155 ORTHO05D006266 3.1e-75 286.2 324 55.2
Gorai.007G164700 Gossypium raimondii HOM05D005155 ORTHO05D006266 3.1e-75 286.2 304 55.6
Nitab4.5_0004941g0060 Nicotiana tabacum HOM05D005155 ORTHO05D006266 8.9e-75 284.6 317 57.1
Rhsim04G0007200 Rhododendron simsii HOM05D005155 ORTHO05D006266 2.0e-74 283.5 326 54.6
Actinidia20617 Actinidia chinensis HOM05D005155 ORTHO05D006266 4.4e-74 282.3 297 58.9
Actinidia24711 Actinidia chinensis HOM05D005155 ORTHO05D006266 7.5e-74 281.6 277 58.1
Gohir.A07G163100 Gossypium hirsutum HOM05D005155 ORTHO05D006266 9.8e-74 281.2 313 54.0
Atru.chr6.3431 Acer truncatum HOM05D005155 ORTHO05D006266 2.2e-73 280.0 314 56.1
Gorai.001G190100 Gossypium raimondii HOM05D005155 ORTHO05D006266 2.9e-73 279.6 312 53.2
Gohir.D07G170200 Gossypium hirsutum HOM05D005155 ORTHO05D006266 4.9e-73 278.9 312 53.2
Prupe.3G194600 Prunus persica HOM05D005155 ORTHO05D006266 4.9e-73 278.9 322 54.0
Nitab4.5_0003086g0050 Nicotiana tabacum HOM05D005155 ORTHO05D006266 8.3e-73 278.1 311 56.6
Manes.13G059900 Manihot esculenta HOM05D005155 ORTHO05D006266 1.4e-72 277.3 315 54.3
PGSC0003DMG400004112 Solanum tuberosum HOM05D005155 ORTHO05D006266 1.4e-72 277.3 334 50.9
Hma1.2p1_0629F.1_g192150 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 2.4e-72 276.6 317 54.9
TWI75G0909 Tripterygium wilfordii HOM05D005155 ORTHO05D006266 6.0e-71 271.9 320 53.4
Sopen05g001730 Solanum pennellii HOM05D005155 ORTHO05D006266 2.3e-70 270.0 338 50.6
Dinv05324 Davidia involucrata HOM05D005155 ORTHO05D006266 8.6e-70 268.1 296 57.1
Solyc05g005730.4 Solanum lycopersicum HOM05D005155 ORTHO05D006266 1.1e-69 267.7 348 51.1
Oeu022053.1 Olea europaea HOM05D005155 ORTHO05D006266 3.3e-69 266.2 318 52.5
Haze_24928 Corylus avellana HOM05D005155 ORTHO05D006266 7.3e-69 265.0 327 54.1
Potri.014G170500 Populus trichocarpa HOM05D005155 ORTHO05D006266 9.5e-69 264.6 317 52.7
CSS0023894 Camellia sinensis var. sinensis HOM05D005155 ORTHO05D006266 2.1e-68 263.5 323 52.3
Duzib211G0098 Durio zibethinus HOM05D005155 ORTHO05D006266 3.6e-68 262.7 305 52.1
Phvul.006G092400 Phaseolus vulgaris HOM05D005155 ORTHO05D006266 3.6e-68 262.7 336 51.2
Peaxi162Scf00359g00214 Petunia axillaris HOM05D005155 ORTHO05D006266 1.4e-67 260.8 322 50.9
Thecc.01G199500 Theobroma cacao HOM05D005155 ORTHO05D006266 1.4e-67 260.8 305 51.5
Sed0007088 Sechium edule HOM05D005155 ORTHO05D006266 1.8e-67 260.4 320 50.6
MELO3C024180.2 Cucumis melo HOM05D005155 ORTHO05D006266 2.3e-67 260.0 321 53.3
CAN.G1447.4 Capsicum annuum HOM05D005155 ORTHO05D006266 3.1e-67 259.6 336 50.0
MD09G1131700 Malus domestica HOM05D005155 ORTHO05D006266 3.1e-67 259.6 326 50.3
Glyma.03G238300 Glycine max HOM05D005155 ORTHO05D006266 4.0e-67 259.2 331 50.5
Glyma.19G235800 Glycine max HOM05D005155 ORTHO05D006266 4.0e-67 259.2 330 50.3
CsaV3_7G002370 Cucumis sativus L. HOM05D005155 ORTHO05D006266 8.9e-67 258.1 317 52.7
PGR044G0745 Punica granatum HOM05D005155 ORTHO05D006266 1.5e-66 257.3 315 51.7
Eucgr.K01388 Eucalyptus grandis HOM05D005155 ORTHO05D006266 5.8e-66 255.4 315 51.4
ClCG02G003040 Citrullus lanatus HOM05D005155 ORTHO05D006266 1.7e-65 253.8 321 51.4
TPR.G3861 Trifolium pratense HOM05D005155 ORTHO05D006266 2.9e-65 253.1 336 47.9
CiPaw.04G197900 Carya illinoinensis HOM05D005155 ORTHO05D006266 4.9e-65 252.3 325 50.8
Psat7g043480 Pisum sativum HOM05D005155 ORTHO05D006266 4.1e-64 249.2 316 49.4
Duzib138G0133 Durio zibethinus HOM05D005155 ORTHO05D006266 7.1e-64 248.4 300 52.0
Lj4g0024217 Lotus japonicus HOM05D005155 ORTHO05D006266 9.2e-64 248.1 336 49.4
CANSAT64G2107 Cannabis sativa HOM05D005155 ORTHO05D006266 1.2e-63 247.7 328 49.7
SGA_v2.0_scaffold181G39700 Striga asiatica HOM05D005155 ORTHO05D006266 1.0e-62 244.6 373 47.7
GSVIVG01030126001 Vitis vinifera HOM05D005155 ORTHO05D006266 1.7e-62 243.8 279 53.4
Cc02_g33980 Coffea canephora HOM05D005155 ORTHO05D006266 5.1e-62 242.3 272 54.8
Cfa014201 Carpinus fangiana HOM05D005155 ORTHO05D006266 8.6e-62 241.5 322 50.9
Ah.08g210400 Amaranthus hybridus HOM05D005155 ORTHO05D006266 1.1e-61 241.1 277 53.4
FAN09G4460 Fragaria x ananassa HOM05D005155 ORTHO05D006266 1.5e-61 240.7 316 50.6
FAN02G4414 Fragaria x ananassa HOM05D005155 ORTHO05D006266 3.3e-61 239.6 316 50.0
Lalb_Chr21g0315451 Lupinus albus HOM05D005155 ORTHO05D006266 3.3e-61 239.6 313 48.9
VMungo0540G1824 Vigna mungo HOM05D005155 ORTHO05D006266 4.3e-61 239.2 332 47.0
CAN.G715.5 Capsicum annuum HOM05D005155 ORTHO05D006266 5.6e-61 238.8 278 51.8
Haze_12586 Corylus avellana HOM05D005155 ORTHO05D006266 7.3e-61 238.4 214 63.6
unitig_26.g9470 Utricularia gibba HOM05D003767 ORTHO05D004507 1.2e-60 237.7 283 52.3
TAR629G2368 Trochodendron aralioides HOM05D005155 ORTHO05D006266 1.6e-60 237.3 329 48.0
DCAR_021083 Daucus carota HOM05D005155 ORTHO05D006266 3.6e-60 236.1 319 49.2
FvH4_6g40390 Fragaria vesca HOM05D005155 ORTHO05D006266 8.9e-59 231.5 316 49.4
RcHm_v2.0_Chr2g0155591 Rosa chinensis HOM05D005155 ORTHO05D006266 2.6e-58 229.9 316 49.4
Ah.08g219720 Amaranthus hybridus HOM05D005155 ORTHO05D006266 3.4e-58 229.6 277 50.9
PSO782G4695 Papaver somniferum HOM05D005155 ORTHO05D006266 4.4e-58 229.2 305 47.9
Aqoxy3G04181 Aquilegia oxysepala HOM05D005155 ORTHO05D006266 5.8e-58 228.8 297 49.8
FAN05G3842 Fragaria x ananassa HOM05D005155 ORTHO05D006266 5.8e-58 228.8 316 48.4
HanXRQChr01g0006811 Helianthus annuus HOM05D005155 ORTHO05D006266 3.8e-57 226.1 318 48.7
Sc20g0004590 Simmondsia chinensis HOM05D005155 ORTHO05D006266 6.4e-57 225.3 331 47.1
TPR.G35685 Trifolium pratense HOM05D005155 ORTHO05D006266 1.1e-56 224.6 347 43.5
Migut.M00065 Erythranthe guttata HOM05D005155 ORTHO05D006266 1.9e-56 223.8 335 47.2
MBI04_g26115_MAGBIO Magnolia biondii HOM05D005155 ORTHO05D006266 4.2e-56 222.6 313 47.3
Lsat_1_v5_gn_0_13881 Lactuca sativa HOM05D005155 ORTHO05D006266 1.2e-55 221.1 319 48.0
PSO210G0096 Papaver somniferum HOM05D005155 ORTHO05D006266 1.2e-55 221.1 310 46.8
SalBow7G0407 Salvia bowleyana HOM05D005155 ORTHO05D006266 1.6e-55 220.7 303 48.8
AUR62030994 Chenopodium quinoa HOM05D005155 ORTHO05D006266 4.6e-55 219.2 220 58.2
HPP92_009941 Vanilla planifolia HOM05D005155 ORTHO05D006266 1.3e-54 217.6 313 47.9
COL.COLO4_19654 Corchorus olitorius HOM05D005155 ORTHO05D006266 3.0e-54 216.5 167 65.3
EL10Ac5g10791 Beta vulgaris HOM05D005155 ORTHO05D006266 3.3e-53 213.0 288 48.6
arahy.Tifrunner.gnm1.ann1.ZBS9GV Arachis hypogaea HOM05D005155 ORTHO05D006266 4.3e-53 212.6 326 44.8
arahy.Tifrunner.gnm1.ann1.FV1RU3 Arachis hypogaea HOM05D005155 ORTHO05D006266 7.3e-53 211.8 326 44.8
FAN14G3535 Fragaria x ananassa HOM05D005155 ORTHO05D006266 1.1e-51 208.0 339 44.5
Ca_02017_v3 Cicer arietinum L. HOM05D005155 ORTHO05D006266 1.8e-51 207.2 301 45.5
Gohir.A11G147700 Gossypium hirsutum HOM05D005155 ORTHO05D006266 1.8e-51 207.2 270 49.6
CDE09G0959 Ceratophyllum demersum HOM05D005155 ORTHO05D006266 7.1e-48 195.3 286 46.5
MSTRG.6620 Avicennia marina HOM05D005155 ORTHO05D006266 2.1e-47 193.7 217 57.1
ECA248G0062 Erigeron canadensis HOM05D005155 ORTHO05D006266 2.7e-47 193.4 364 41.8
Nn3g19477 Nelumbo nucifera HOM05D005155 ORTHO05D006266 3.5e-47 193.0 278 45.3
QL04p067008 Quercus lobata HOM05D005155 ORTHO05D006266 4.6e-47 192.6 489 34.6
Psat5g216800 Pisum sativum HOM05D005155 ORTHO05D006266 7.3e-45 185.3 259 47.5
MD17G1119200 Malus domestica HOM05D005155 ORTHO05D006266 9.6e-45 184.9 244 49.2
Zm00001eb298370 Zea mays HOM05D005155 ORTHO05D006266 3.1e-43 179.9 186 57.0
Nn1g02050 Nelumbo nucifera HOM05D005155 ORTHO05D006266 6.9e-43 178.7 301 45.5
ATR0225G032 Amborella trichopoda HOM05D005155 ORTHO05D006266 6.4e-41 172.2 286 43.0
Os11g0266000 Oryza sativa ssp. japonica HOM05D005155 ORTHO05D006266 6.4e-41 172.2 285 41.8
Cc00_g18660 Coffea canephora HOM05D005155 ORTHO05D006266 1.9e-37 160.6 109 73.4
SEGI_31719 Sequoiadendron giganteum HOM05D005155 ORTHO05D006266 5.6e-37 159.1 205 47.3
Lj1A800T38 Lonicera japonica HOM05D005155 ORTHO05D006266 2.1e-36 157.1 325 40.9
Cc00_g14350 Coffea canephora HOM05D005155 ORTHO05D006266 4.0e-35 152.9 109 70.6
CiPaw.03G283900 Carya illinoinensis HOM05D005155 ORTHO05D006266 9.0e-35 151.8 323 39.9
Cc07_g20190 Coffea canephora HOM05D005155 ORTHO05D006266 1.0e-33 148.3 106 70.8
PSO782G5585 Papaver somniferum HOM05D005155 ORTHO05D006266 1.6e-28 131.0 227 43.6
AUR62008242 Chenopodium quinoa HOM05D005155 ORTHO05D006266 3.1e-27 126.7 184 41.8
PSO782G0752 Papaver somniferum HOM05D005155 ORTHO05D006266 1.4e-24 117.9 225 41.3
QL01p014609 Quercus lobata HOM05D005155 ORTHO05D006266 4.2e-24 116.3 110 61.8
AagrBONN_evm.TU.Sc2ySwM_368.2873 Anthoceros agrestis HOM05D005155 ORTHO05D006266 1.5e-21 107.8 201 37.3
Cc07_g20180 Coffea canephora HOM05D005155 ORTHO05D006266 9.7e-21 105.1 98 60.2
Nn1g02049 Nelumbo nucifera HOM05D005155 ORTHO05D006266 2.2e-20 104.0 188 42.6
Mapoly0148s0006 Marchantia polymorpha HOM05D005155 ORTHO05D006266 1.2e-18 98.2 204 37.7
Hma1.2p1_1388F.1_g279940 Hydrangea macrophylla HOM05D005155 ORTHO05D006266 2.0e-18 97.4 69 71.0
MD17G1119400 Malus domestica HOM05D005155 ORTHO05D006266 2.6e-18 97.1 76 64.5
CBR_g23113 Chara braunii HOM05D005155 ORTHO05D006266 1.2e-15 88.2 166 35.5
Pp3c22_320 Physcomitrium patens HOM05D005155 ORTHO05D006266 1.4e-14 84.7 219 31.5
Pp3c22_322 Physcomitrium patens HOM05D005155 ORTHO05D006266 1.4e-14 84.7 219 31.5
Cc00_g29960 Coffea canephora HOM05D005155 ORTHO05D006266 4.8e-12 76.3 82 57.3
A02p30930 Brassica napus HOM05D005155 ORTHO05D006266 8.5e-09 65.5 66 51.5
PRCOL_00000835 Prasinoderma coloniale HOM05D005155 ORTHO05D006266 2.5e-08 63.9 138 36.2
QL03p064628 Quercus lobata HOM05D005155 ORTHO05D006266 2.5e-08 63.9 304 29.9
Lj1A800T39 Lonicera japonica HOM05D005155 ORTHO05D006266 1.6e-07 61.2 49 63.3


User provided reference genes

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