Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0748 Capsella rubella HOM05D004039 ORTHO05D004573 1.3e-89 333.2 192 100.0
AT5G47920 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 5.3e-78 294.7 193 91.2
AL8G19920 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 1.9e-75 286.2 193 90.2
CARHR291780 Cardamine hirsuta HOM05D004039 ORTHO05D004573 3.5e-74 282.0 192 88.0
Thhalv10005412m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.3e-71 273.5 193 82.4
BraA02t08705Z Brassica rapa HOM05D004039 ORTHO05D004573 9.0e-70 267.3 193 77.7
BcaB07g29998 Brassica carinata HOM05D004039 ORTHO05D004573 1.2e-69 266.9 193 78.8
A02p37190 Brassica napus HOM05D004039 ORTHO05D004573 2.0e-69 266.2 193 77.7
BcaB04g19545 Brassica carinata HOM05D004039 ORTHO05D004573 4.5e-69 265.0 193 78.8
BcaC03g17621 Brassica carinata HOM05D004039 ORTHO05D004573 5.8e-69 264.6 193 78.2
C02p56210 Brassica napus HOM05D004039 ORTHO05D004573 5.8e-69 264.6 193 78.2
BolC2t11677H Brassica oleracea HOM05D004039 ORTHO05D004573 5.8e-69 264.6 193 78.2
BcaC04g23799 Brassica carinata HOM05D004039 ORTHO05D004573 6.5e-68 261.2 193 77.7
BolC9t53384H Brassica oleracea HOM05D004039 ORTHO05D004573 7.1e-67 257.7 193 76.7
C09p04550 Brassica napus HOM05D004039 ORTHO05D004573 1.8e-62 243.0 193 74.1
Sp2g18420 Schrenkiella parvula HOM05D004039 ORTHO05D004573 5.9e-61 238.0 193 79.8
BraA09t36066Z Brassica rapa HOM05D004039 ORTHO05D004573 1.7e-60 236.5 193 71.5
Aa31LG3G14220 Aethionema arabicum HOM05D004039 ORTHO05D004573 6.5e-60 234.6 193 70.5
A09p04290 Brassica napus HOM05D004039 ORTHO05D004573 2.5e-56 222.6 183 72.1
A06p39450 Brassica napus HOM05D004039 ORTHO05D004573 6.3e-55 218.0 167 79.6
BraA06t26860Z Brassica rapa HOM05D004039 ORTHO05D004573 8.2e-55 217.6 187 73.8
BcaC06g30835 Brassica carinata HOM05D004039 ORTHO05D004573 5.3e-54 214.9 168 75.0
C07p38820 Brassica napus HOM05D004039 ORTHO05D004573 9.1e-54 214.2 167 78.4
BolC7t44401H Brassica oleracea HOM05D004039 ORTHO05D004573 1.7e-52 209.9 185 69.2
THA.LOC104827510 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.0e-49 200.7 194 60.3
THA.LOC104801433 Tarenaya hassleriana HOM05D004039 ORTHO05D004573 1.1e-46 190.7 191 59.7
TWI75G0895 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 4.2e-43 178.7 191 58.6
FvH4_4g22190 Fragaria vesca HOM05D004039 ORTHO05D004573 2.1e-42 176.4 193 53.9
RcHm_v2.0_Chr4g0428421 Rosa chinensis HOM05D004039 ORTHO05D004573 3.6e-42 175.6 198 53.0
Manes.08G099400 Manihot esculenta HOM05D004039 ORTHO05D004573 6.1e-42 174.9 194 54.6
Cfa009471 Carpinus fangiana HOM05D004039 ORTHO05D004573 2.3e-41 172.9 188 58.5
Ciclev10030001m.g Citrus clementina HOM05D004039 ORTHO05D004573 3.0e-41 172.6 200 55.0
Eucgr.B03568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 3.9e-41 172.2 196 54.6
FAN07G2708 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.1e-40 170.6 193 52.8
FAN17G1354 Fragaria x ananassa HOM05D004039 ORTHO05D004573 1.5e-40 170.2 193 52.3
Hma1.2p1_0738F.1_g210940 Hydrangea macrophylla HOM05D004039 ORTHO05D004573 1.5e-40 170.2 192 57.3
Cpa.g.sc686.1 Carica papaya HOM05D004039 ORTHO05D004573 2.6e-40 169.5 189 54.5
Atru.chr12.1473 Acer truncatum HOM05D004039 ORTHO05D004573 5.7e-40 168.3 191 55.5
CiPaw.06G111200 Carya illinoinensis HOM05D004039 ORTHO05D004573 7.4e-40 167.9 204 51.5
QL03p048351 Quercus lobata HOM05D004039 ORTHO05D004573 7.4e-40 167.9 195 54.9
Prupe.1G211600 Prunus persica HOM05D004039 ORTHO05D004573 9.7e-40 167.5 195 50.8
CiPaw.05G098500 Carya illinoinensis HOM05D004039 ORTHO05D004573 3.7e-39 165.6 191 56.5
MD13G1134000 Malus domestica HOM05D004039 ORTHO05D004573 3.7e-39 165.6 200 51.5
Haze_12527 Corylus avellana HOM05D004039 ORTHO05D004573 6.3e-39 164.9 188 54.3
MD16G1144600 Malus domestica HOM05D004039 ORTHO05D004573 1.1e-38 164.1 203 51.2
MELO3C026747.2 Cucumis melo HOM05D004039 ORTHO05D004573 4.1e-38 162.2 197 51.8
ClCG10G013010 Citrullus lanatus HOM05D004039 ORTHO05D004573 7.0e-38 161.4 199 56.3
CSS0018669 Camellia sinensis var. sinensis HOM05D004039 ORTHO05D004573 1.3e-36 157.1 206 49.5
COL.COLO4_07108 Corchorus olitorius HOM05D004039 ORTHO05D004573 5.0e-36 155.2 190 52.1
GSVIVG01032947001 Vitis vinifera HOM05D004039 ORTHO05D004573 5.0e-36 155.2 200 47.5
Potri.003G160300 Populus trichocarpa HOM05D004039 ORTHO05D004573 8.5e-36 154.5 202 52.0
PGR102G1502 Punica granatum HOM05D004039 ORTHO05D004573 2.5e-35 152.9 191 51.3
Thecc.01G239800 Theobroma cacao HOM05D004039 ORTHO05D004573 1.2e-34 150.6 190 52.6
HanXRQChr10g0319941 Helianthus annuus HOM05D004039 ORTHO05D004573 4.7e-34 148.7 197 50.8
Sed0004494 Sechium edule HOM05D004039 ORTHO05D004573 4.7e-34 148.7 197 50.3
Oeu010264.1 Olea europaea HOM05D004039 ORTHO05D004573 6.1e-34 148.3 198 48.5
QL02p068241 Quercus lobata HOM05D004039 ORTHO05D004573 5.2e-33 145.2 208 46.6
PGSC0003DMG400011591 Solanum tuberosum HOM05D004039 ORTHO05D004573 5.2e-33 145.2 211 46.4
MBI11_g23197_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 1.2e-32 144.1 195 48.2
Thecc.04G052000 Theobroma cacao HOM05D004039 ORTHO05D004573 1.2e-32 144.1 208 43.8
Sc11g0000030 Simmondsia chinensis HOM05D004039 ORTHO05D004573 2.6e-32 142.9 197 47.7
HPP92_025084 Vanilla planifolia HOM05D004039 ORTHO05D004573 4.4e-32 142.1 194 46.4
Sopen09g034240 Solanum pennellii HOM05D004039 ORTHO05D004573 5.7e-32 141.7 212 45.8
CANSAT64G1067 Cannabis sativa HOM05D004039 ORTHO05D004573 9.7e-32 141.0 213 50.2
CAN.G1588.13 Capsicum annuum HOM05D004039 ORTHO05D004573 1.3e-31 140.6 209 44.0
Gorai.006G002900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.3e-31 140.6 193 50.3
Duzib205G0448 Durio zibethinus HOM05D001017 ORTHO05D001025 1.7e-31 140.2 180 51.7
Gohir.D09G002400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.7e-31 140.2 193 50.3
Gohir.A09G002600 Gossypium hirsutum HOM05D004039 ORTHO05D004573 4.8e-31 138.7 193 50.3
Manes.11G073200 Manihot esculenta HOM05D004039 ORTHO05D004573 4.8e-31 138.7 218 42.2
Ah.16g104320 Amaranthus hybridus HOM05D004039 ORTHO05D004573 8.2e-31 137.9 211 42.2
Gohir.D12G146700 Gossypium hirsutum HOM05D004039 ORTHO05D004573 8.2e-31 137.9 206 44.2
Gohir.A12G141800 Gossypium hirsutum HOM05D004039 ORTHO05D004573 1.4e-30 137.1 206 43.7
Gorai.008G157900 Gossypium raimondii HOM05D004039 ORTHO05D004573 1.4e-30 137.1 210 43.8
VMungo1302G0001 Vigna mungo HOM05D004039 ORTHO05D004573 1.4e-30 137.1 204 43.6
Sabra14G0105500 Salix brachista HOM05D000032 ORTHO05D009383 1.8e-30 136.7 211 42.7
Sabra03G0116500 Salix brachista HOM05D004039 ORTHO05D004573 2.4e-30 136.3 196 46.9
EL10Ac2g04246 Beta vulgaris HOM05D004039 ORTHO05D004573 3.1e-30 136.0 214 41.6
Cpa.g.sc70.36 Carica papaya HOM05D004039 ORTHO05D004573 3.1e-30 136.0 185 45.4
Phvul.001G098500 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 3.1e-30 136.0 205 42.0
Potri.014G140000 Populus trichocarpa HOM05D004039 ORTHO05D004573 5.3e-30 135.2 211 43.1
Lalb_Chr14g0364131 Lupinus albus HOM05D004039 ORTHO05D004573 9.1e-30 134.4 208 44.7
Haze_14987 Corylus avellana HOM05D004039 ORTHO05D004573 1.2e-29 134.0 219 43.4
Nitab4.5_0019080g0010 Nicotiana tabacum HOM05D004039 ORTHO05D004573 1.2e-29 134.0 196 46.4
Cc02_g30640 Coffea canephora HOM05D004039 ORTHO05D004573 1.6e-29 133.7 210 42.9
AUR62031493 Chenopodium quinoa HOM05D004039 ORTHO05D004573 2.0e-29 133.3 211 40.3
Lalb_Chr24g0402991 Lupinus albus HOM05D004039 ORTHO05D004573 3.5e-29 132.5 213 42.7
TAR374G0420 Trochodendron aralioides HOM05D004039 ORTHO05D004573 5.9e-29 131.7 190 46.3
Solyc09g091270.3 Solanum lycopersicum HOM05D004039 ORTHO05D004573 1.0e-28 131.0 179 49.7
Ciclev10016691m.g Citrus clementina HOM05D004039 ORTHO05D004573 1.3e-28 130.6 214 46.7
AUR62012365 Chenopodium quinoa HOM05D004039 ORTHO05D004573 1.7e-28 130.2 211 41.2
Dinv06937 Davidia involucrata HOM05D004039 ORTHO05D004573 5.0e-28 128.6 177 46.9
ATR0582G327 Amborella trichopoda HOM05D004039 ORTHO05D004573 6.5e-28 128.3 190 42.1
PGR042G1501 Punica granatum HOM05D004039 ORTHO05D004573 6.5e-28 128.3 228 43.0
Glyma.19G106500 Glycine max HOM05D004039 ORTHO05D004573 1.1e-27 127.5 213 42.3
Cfa007136 Carpinus fangiana HOM05D004039 ORTHO05D004573 1.9e-27 126.7 223 42.2
Gohir.D03G099900 Gossypium hirsutum HOM05D004039 ORTHO05D004573 2.5e-27 126.3 187 46.5
Gorai.003G105000 Gossypium raimondii HOM05D004039 ORTHO05D004573 2.5e-27 126.3 187 46.5
SHI11395 Sapria himalayana HOM05D004039 ORTHO05D004573 2.5e-27 126.3 197 39.6
CsaV3_3G032870 Cucumis sativus L. HOM05D004039 ORTHO05D004573 3.2e-27 125.9 192 45.8
Duzib187G1305 Durio zibethinus HOM05D004039 ORTHO05D004573 5.5e-27 125.2 219 39.7
COL.COLO4_13404 Corchorus olitorius HOM05D004039 ORTHO05D004573 7.2e-27 124.8 193 42.5
Gohir.A03G073400 Gossypium hirsutum HOM05D004039 ORTHO05D004573 7.2e-27 124.8 187 46.0
Manes.04G096800 Manihot esculenta HOM05D004039 ORTHO05D004573 7.2e-27 124.8 192 41.7
Glyma.16G045200 Glycine max HOM05D004039 ORTHO05D004573 1.2e-26 124.0 213 40.8
Eucgr.I01568 Eucalyptus grandis HOM05D004039 ORTHO05D004573 2.1e-26 123.2 187 46.5
Sabra01G0049400 Salix brachista HOM05D004039 ORTHO05D004573 2.7e-26 122.9 200 45.0
Lj1g0002386 Lotus japonicus HOM05D004039 ORTHO05D004573 5.2e-25 118.6 205 42.4
Ca_08235_v3 Cicer arietinum L. HOM05D004039 ORTHO05D004573 1.2e-24 117.5 217 40.6
Atru.chr6.2731 Acer truncatum HOM05D004039 ORTHO05D004573 3.4e-24 115.9 216 43.5
Eucgr.G01911 Eucalyptus grandis HOM05D004039 ORTHO05D004573 1.3e-23 114.0 203 41.9
Psat3g089920 Pisum sativum HOM05D004039 ORTHO05D004573 1.3e-23 114.0 212 39.2
BcaC04g24246 Brassica carinata HOM05D004039 ORTHO05D004573 1.7e-23 113.6 191 40.3
MD17G1003900 Malus domestica HOM05D004039 ORTHO05D004573 2.8e-23 112.8 233 36.1
PSO017G5432 Papaver somniferum HOM05D004039 ORTHO05D004573 2.8e-23 112.8 189 43.4
PSO478G3045 Papaver somniferum HOM05D004039 ORTHO05D004573 6.3e-23 111.7 189 42.9
Peaxi162Scf00047g00153 Petunia axillaris HOM05D004039 ORTHO05D004573 8.3e-23 111.3 166 47.6
BraA10t44513Z Brassica rapa HOM05D004039 ORTHO05D004573 1.4e-22 110.5 193 39.4
Thhalv10014767m.g Eutrema salsugineum HOM05D004039 ORTHO05D004573 1.4e-22 110.5 196 39.3
AT5G13880 Arabidopsis thaliana HOM05D004039 ORTHO05D004573 2.4e-22 109.8 191 39.8
Carub.0006s1207 Capsella rubella HOM05D004039 ORTHO05D004573 2.4e-22 109.8 193 40.4
TPR.G31659 Trifolium pratense HOM05D004039 ORTHO05D004573 2.4e-22 109.8 217 42.9
BcaC04g19071 Brassica carinata HOM05D004039 ORTHO05D004573 4.1e-22 109.0 194 38.7
C09p63220 Brassica napus HOM05D004039 ORTHO05D004573 4.1e-22 109.0 194 38.7
BolC9t59158H Brassica oleracea HOM05D004039 ORTHO05D004573 4.1e-22 109.0 194 38.7
CDE05G3127 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 4.1e-22 109.0 202 36.6
Migut.K01132 Erythranthe guttata HOM05D004039 ORTHO05D004573 4.1e-22 109.0 202 37.1
Psat3g090520 Pisum sativum HOM05D004039 ORTHO05D004573 4.1e-22 109.0 212 38.7
DCAR_031611 Daucus carota HOM05D004039 ORTHO05D004573 5.4e-22 108.6 194 40.2
GSVIVG01001118001 Vitis vinifera HOM05D004039 ORTHO05D011171 1.6e-21 107.1 89 65.2
Medtr7g084710 Medicago truncatula HOM05D004039 ORTHO05D004573 2.7e-21 106.3 216 38.9
Nn3g16207 Nelumbo nucifera HOM05D004039 ORTHO05D004573 2.7e-21 106.3 199 37.2
AL6G24520 Arabidopsis lyrata HOM05D004039 ORTHO05D004573 4.5e-21 105.5 196 38.8
Medtr7g084740 Medicago truncatula HOM05D004039 ORTHO05D004573 1.0e-20 104.4 231 36.8
Sp6g30120 Schrenkiella parvula HOM05D004039 ORTHO05D004573 1.0e-20 104.4 192 38.5
A10p24480 Brassica napus HOM05D004039 ORTHO05D004573 1.3e-20 104.0 194 38.7
Zm00001eb085640 Zea mays HOM05D004039 ORTHO05D004573 2.3e-20 103.2 210 44.8
Lalb_Chr21g0317001 Lupinus albus HOM05D004039 ORTHO05D004573 1.1e-19 100.9 207 34.8
Psat3g090560 Pisum sativum HOM05D004039 ORTHO05D004573 1.5e-19 100.5 246 32.5
CARHR199550 Cardamine hirsuta HOM05D004039 ORTHO05D004573 4.2e-19 99.0 187 39.6
Medtr7g084720 Medicago truncatula HOM05D004039 ORTHO05D004573 4.2e-19 99.0 192 37.5
Rhsim12G0091100 Rhododendron simsii HOM05D004039 ORTHO05D004573 5.5e-19 98.6 196 39.8
Glyma.02G068200 Glycine max HOM05D004039 ORTHO05D004573 7.2e-19 98.2 244 33.6
C03p07240 Brassica napus HOM05D004039 ORTHO05D004573 9.5e-19 97.8 192 38.0
BolC3t13225H Brassica oleracea HOM05D004039 ORTHO05D004573 9.5e-19 97.8 192 38.0
TWI12G1264 Tripterygium wilfordii HOM05D004039 ORTHO05D004573 2.1e-18 96.7 194 45.9
A03p06250 Brassica napus HOM05D004039 ORTHO05D004573 3.6e-18 95.9 190 36.8
BraA03t09957Z Brassica rapa HOM05D004039 ORTHO05D004573 3.6e-18 95.9 190 36.8
Nitab4.5_0002182g0030 Nicotiana tabacum HOM05D004039 ORTHO05D004573 6.1e-18 95.1 89 59.6
BcaB01g05331 Brassica carinata HOM05D004039 ORTHO05D004573 1.8e-17 93.6 193 38.9
MBI07_g42011_MAGBIO Magnolia biondii HOM05D004039 ORTHO05D004573 3.0e-17 92.8 223 32.7
ECA248G3450 Erigeron canadensis HOM05D000009 ORTHO05D000008 4.0e-17 92.4 79 63.3
SGA_v2.0_scaffold258G45761 Striga asiatica HOM05D004039 ORTHO05D004573 4.0e-17 92.4 83 61.4
Prupe.3G315300 Prunus persica HOM05D004039 ORTHO05D004573 8.9e-17 91.3 223 39.0
Os04g0382400 Oryza sativa ssp. japonica HOM05D004039 ORTHO05D004573 1.2e-16 90.9 199 42.2
Phvul.004G067800 Phaseolus vulgaris HOM05D004039 ORTHO05D004573 1.2e-16 90.9 204 32.8
FAN12G1550 Fragaria x ananassa HOM05D004039 ORTHO05D004573 3.7e-15 85.9 112 48.2
Zm00001eb181000 Zea mays HOM05D004039 ORTHO05D004573 2.4e-14 83.2 196 32.7
Actinidia33989 Actinidia chinensis HOM05D004548 ORTHO05D005402 7.0e-14 81.6 185 36.8
CDE02G1703 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 7.0e-14 81.6 190 28.9
SEGI_35194 Sequoiadendron giganteum HOM05D004039 ORTHO05D004573 3.5e-13 79.3 193 35.8
CDE06G1383 Ceratophyllum demersum HOM05D004039 ORTHO05D004573 2.9e-12 76.3 190 30.5
TPR.G31663 Trifolium pratense HOM05D004039 ORTHO05D004573 2.9e-12 76.3 121 43.0
Aqoxy3G01771 Aquilegia oxysepala HOM05D004039 ORTHO05D004573 2.5e-11 73.2 73 58.9
CiPaw.14G093600 Carya illinoinensis HOM05D004039 ORTHO05D004573 2.5e-11 73.2 180 33.9
MELO3C014757.2 Cucumis melo HOM05D004039 ORTHO05D004573 1.4e-09 67.4 56 62.5
Sed0011010 Sechium edule HOM05D004039 ORTHO05D004573 1.4e-09 67.4 66 57.6
CsaV3_3G020070 Cucumis sativus L. HOM05D004039 ORTHO05D004573 1.8e-09 67.0 56 62.5
Rhsim08G0037500 Rhododendron simsii HOM05D004039 ORTHO05D000739 8.9e-09 64.7 187 36.4
PGR119G1683 Punica granatum HOM05D004039 ORTHO05D004573 1.5e-08 63.9 197 33.0
Zm00001eb318100 Zea mays HOM05D015480 ORTHO05D019326 5.8e-08 62.0 204 28.9
ClCG05G012460 Citrullus lanatus HOM05D004039 ORTHO05D004573 6.4e-07 58.5 191 29.3


User provided reference genes

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