Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0737 Capsella rubella HOM05D005090 ORTHO05D006142 7.5e-95 350.5 177 100.0
AL8G19800 Arabidopsis lyrata HOM05D005090 ORTHO05D006142 1.9e-82 309.3 178 89.9
AT5G47830 Arabidopsis thaliana HOM05D005090 ORTHO05D006142 1.2e-81 306.6 179 88.8
Thhalv10005720m.g Eutrema salsugineum HOM05D005090 ORTHO05D006142 3.0e-80 302.0 178 88.2
C07p38740 Brassica napus HOM05D005090 ORTHO05D006142 2.6e-79 298.9 178 87.1
BolC7t44393H Brassica oleracea HOM05D005090 ORTHO05D006142 2.6e-79 298.9 178 87.1
Sp2g18330 Schrenkiella parvula HOM05D005090 ORTHO05D006142 2.0e-76 289.3 173 86.1
CARHR184350 Cardamine hirsuta HOM05D005090 ORTHO05D006142 1.7e-75 286.2 178 88.8
A06p39530 Brassica napus HOM05D005090 ORTHO05D006142 1.1e-74 283.5 178 84.8
BraA06t26868Z Brassica rapa HOM05D005090 ORTHO05D006142 3.3e-74 282.0 178 84.3
BcaC03g17615 Brassica carinata HOM05D005090 ORTHO05D006142 2.2e-70 269.2 172 83.1
BolC2t11671H Brassica oleracea HOM05D005090 ORTHO05D006142 2.2e-70 269.2 179 82.7
A02p37140 Brassica napus HOM05D005090 ORTHO05D006142 1.1e-69 266.9 175 80.0
C02p56140 Brassica napus HOM05D005090 ORTHO05D006142 1.1e-69 266.9 172 82.6
BraA02t08700Z Brassica rapa HOM05D005090 ORTHO05D006142 2.4e-69 265.8 175 79.4
Aa31LG3G14010 Aethionema arabicum HOM05D005090 ORTHO05D006142 6.0e-68 261.2 177 76.3
BcaB07g30052 Brassica carinata HOM05D005090 ORTHO05D006142 1.2e-63 246.9 173 78.6
THA.LOC104807114 Tarenaya hassleriana HOM05D005090 ORTHO05D006142 1.4e-56 223.4 171 67.3
BcaB05g23208 Brassica carinata HOM05D005090 ORTHO05D006142 6.4e-54 214.5 124 84.7
BcaB04g18280 Brassica carinata HOM05D005090 ORTHO05D006142 1.2e-52 210.3 117 88.9
Cfa009959 Carpinus fangiana HOM05D005090 ORTHO05D006142 5.2e-48 194.9 175 58.9
Prupe.1G431400 Prunus persica HOM05D005090 ORTHO05D006142 5.2e-48 194.9 175 58.3
CiPaw.15G053600 Carya illinoinensis HOM05D005090 ORTHO05D006142 1.5e-47 193.4 175 57.7
Gorai.010G022500 Gossypium raimondii HOM05D005090 ORTHO05D006142 7.6e-47 191.0 178 56.7
Gohir.D06G019036 Gossypium hirsutum HOM05D005090 ORTHO05D006142 1.3e-46 190.3 180 56.1
Manes.18G040700 Manihot esculenta HOM05D005090 ORTHO05D006142 1.7e-46 189.9 170 58.2
Cpa.g.sc21.163 Carica papaya HOM05D005090 ORTHO05D006142 2.9e-46 189.1 175 57.7
RcHm_v2.0_Chr6g0308461 Rosa chinensis HOM05D005090 ORTHO05D006142 2.9e-46 189.1 177 58.2
Aqoxy6G01237 Aquilegia oxysepala HOM05D005090 ORTHO05D006142 4.9e-46 188.3 147 63.3
FvH4_2g33950 Fragaria vesca HOM05D005090 ORTHO05D006142 8.4e-46 187.6 176 57.4
FAN24G0633 Fragaria x ananassa HOM05D005090 ORTHO05D006142 8.4e-46 187.6 176 57.4
FAN20G1047 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.1e-45 187.2 177 57.1
Duzib041G0676 Durio zibethinus HOM05D005090 ORTHO05D006142 1.4e-45 186.8 176 56.8
Duzib093G0455 Durio zibethinus HOM05D005090 ORTHO05D006142 1.4e-45 186.8 175 55.4
Eucgr.F02314 Eucalyptus grandis HOM05D005090 ORTHO05D006142 1.4e-45 186.8 141 66.0
Phvul.001G024300 Phaseolus vulgaris HOM05D005090 ORTHO05D006142 1.4e-45 186.8 172 54.7
Atru.chr13.741 Acer truncatum HOM05D005090 ORTHO05D006142 1.9e-45 186.4 171 58.5
TWI36G0811 Tripterygium wilfordii HOM05D005090 ORTHO05D006142 3.2e-45 185.7 179 57.0
FAN27G2315 Fragaria x ananassa HOM05D005090 ORTHO05D006142 4.2e-45 185.3 177 56.5
TAR376G0388 Trochodendron aralioides HOM05D005090 ORTHO05D006142 4.2e-45 185.3 182 57.7
Sabra14G0016700 Salix brachista HOM05D005090 ORTHO05D006142 5.4e-45 184.9 179 54.2
Ca_13273_v3 Cicer arietinum L. HOM05D005090 ORTHO05D006142 7.1e-45 184.5 161 56.5
ClCG05G020140 Citrullus lanatus HOM05D005090 ORTHO05D006142 9.3e-45 184.1 172 57.6
Potri.002G123400 Populus trichocarpa HOM05D005090 ORTHO05D006142 9.3e-45 184.1 170 54.7
FAN15G0851 Fragaria x ananassa HOM05D005090 ORTHO05D006142 1.2e-44 183.7 180 56.7
AUR62036618 Chenopodium quinoa HOM05D005090 ORTHO05D006142 1.6e-44 183.3 154 61.7
Lj5g0006850 Lotus japonicus HOM05D005090 ORTHO05D006142 1.6e-44 183.3 166 56.0
Potri.014G024500 Populus trichocarpa HOM05D005090 ORTHO05D006142 2.1e-44 183.0 173 56.6
Rhsim06G0054600 Rhododendron simsii HOM05D005090 ORTHO05D006142 2.1e-44 183.0 145 60.7
VMungo0647G1453 Vigna mungo HOM05D005090 ORTHO05D006142 2.1e-44 183.0 170 54.1
Ciclev10002608m.g Citrus clementina HOM05D005090 ORTHO05D006142 2.7e-44 182.6 145 62.1
Glyma.14G085300 Glycine max HOM05D005090 ORTHO05D006142 2.7e-44 182.6 141 63.1
Oeu009772.1 Olea europaea HOM05D005090 ORTHO05D006142 2.7e-44 182.6 173 53.8
CSS0005413 Camellia sinensis var. sinensis HOM05D005090 ORTHO05D006142 3.5e-44 182.2 177 52.5
Peaxi162Scf00121g00414 Petunia axillaris HOM05D005090 ORTHO05D006142 3.5e-44 182.2 171 55.0
Actinidia22653 Actinidia chinensis HOM05D005090 ORTHO05D006142 4.6e-44 181.8 145 60.0
CANSAT25G3428 Cannabis sativa HOM05D005090 ORTHO05D006142 4.6e-44 181.8 153 61.4
Sed0019095 Sechium edule HOM05D005090 ORTHO05D006142 4.6e-44 181.8 174 56.3
Lalb_Chr22g0354971 Lupinus albus HOM05D005090 ORTHO05D006142 6.0e-44 181.4 164 53.0
MD08G1095400 Malus domestica HOM05D005090 ORTHO05D006142 6.0e-44 181.4 170 56.5
Actinidia01086 Actinidia chinensis HOM05D005090 ORTHO05D006142 7.8e-44 181.0 178 53.4
Duzib116G0889 Durio zibethinus HOM05D005090 ORTHO05D006142 1.3e-43 180.3 173 54.9
Glyma.17G239400 Glycine max HOM05D005090 ORTHO05D006142 3.9e-43 178.7 169 53.3
Nitab4.5_0004730g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 5.1e-43 178.3 185 50.8
CANSAT56G0556 Cannabis sativa HOM05D005090 ORTHO05D006142 6.6e-43 177.9 155 61.3
Sed0001046 Sechium edule HOM05D005090 ORTHO05D006142 6.6e-43 177.9 143 62.2
arahy.Tifrunner.gnm1.ann1.LLUM42 Arachis hypogaea HOM05D005090 ORTHO05D006142 8.7e-43 177.6 145 57.9
arahy.Tifrunner.gnm1.ann1.Q1327U Arachis hypogaea HOM05D005090 ORTHO05D006142 8.7e-43 177.6 145 57.9
GSVIVG01009445001 Vitis vinifera HOM05D005090 ORTHO05D006142 8.7e-43 177.6 163 55.2
MD15G1077900 Malus domestica HOM05D005090 ORTHO05D006142 1.9e-42 176.4 164 56.1
PGR031G1041 Punica granatum HOM05D005090 ORTHO05D006142 1.9e-42 176.4 167 54.5
CAN.G1030.34 Capsicum annuum HOM05D005090 ORTHO05D006142 2.5e-42 176.0 155 56.1
MELO3C016776.2 Cucumis melo HOM05D005090 ORTHO05D006142 7.3e-42 174.5 144 61.8
Nitab4.5_0002548g0010 Nicotiana tabacum HOM05D005090 ORTHO05D006142 7.3e-42 174.5 180 48.9
Sc15g0005920 Simmondsia chinensis HOM05D005090 ORTHO05D006142 7.3e-42 174.5 142 63.4
Thecc.08G002400 Theobroma cacao HOM05D005090 ORTHO05D006142 7.3e-42 174.5 173 53.8
COL.COLO4_10129 Corchorus olitorius HOM05D005090 ORTHO05D006142 1.6e-41 173.3 201 48.8
Hund05334 Selenicereus undatus HOM05D005090 ORTHO05D006142 1.6e-41 173.3 182 51.6
Sopen04g032180 Solanum pennellii HOM05D005090 ORTHO05D006142 2.1e-41 172.9 180 48.9
EL10As7g23773 Beta vulgaris HOM05D005090 ORTHO05D006142 3.6e-41 172.2 152 57.9
Medtr1g018930 Medicago truncatula HOM05D005090 ORTHO05D006142 4.8e-41 171.8 161 54.7
MSTRG.1060 Avicennia marina HOM05D005090 ORTHO05D006142 6.2e-41 171.4 151 59.6
Solyc04g078600.3 Solanum lycopersicum HOM05D005090 ORTHO05D006142 6.2e-41 171.4 139 58.3
PSO541G4295 Papaver somniferum HOM05D005090 ORTHO05D006142 8.1e-41 171.0 170 54.7
PSO675G4571 Papaver somniferum HOM05D005090 ORTHO05D006142 1.8e-40 169.9 170 53.5
PGSC0003DMG400007949 Solanum tuberosum HOM05D005090 ORTHO05D006142 3.1e-40 169.1 139 57.6
Hma1.2p1_0360F.1_g135840 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 6.9e-40 167.9 178 51.7
Nn1g04760 Nelumbo nucifera HOM05D005090 ORTHO05D006142 6.9e-40 167.9 174 51.1
MBI16_g23060_MAGBIO Magnolia biondii HOM05D005090 ORTHO05D006142 9.0e-40 167.5 169 53.8
Nn5g30374 Nelumbo nucifera HOM05D005090 ORTHO05D006142 3.4e-39 165.6 167 52.7
Psat6g014640 Pisum sativum HOM05D005090 ORTHO05D006142 7.6e-39 164.5 163 51.5
SalBow7G1773 Salvia bowleyana HOM05D005090 ORTHO05D006142 2.2e-38 162.9 177 50.3
CDE06G1995 Ceratophyllum demersum HOM05D005090 ORTHO05D006142 2.9e-38 162.5 157 54.8
DCAR_019423 Daucus carota HOM05D005090 ORTHO05D006142 3.8e-38 162.2 173 49.7
Cc10_g04780 Coffea canephora HOM05D005090 ORTHO05D006142 2.4e-37 159.5 139 55.4
BcaB01g00393 Brassica carinata HOM05D005090 ORTHO05D006142 3.2e-37 159.1 103 76.7
ECA246G0692 Erigeron canadensis HOM05D005090 ORTHO05D006142 4.2e-37 158.7 172 48.3
HanXRQChr04g0103471 Helianthus annuus HOM05D005090 ORTHO05D006142 4.2e-37 158.7 172 48.3
AUR62038807 Chenopodium quinoa HOM05D005090 ORTHO05D006142 5.4e-37 158.3 145 56.6
Haze_18058 Corylus avellana HOM05D005090 ORTHO05D006142 7.1e-37 157.9 240 40.8
ATR0762G034 Amborella trichopoda HOM05D005090 ORTHO05D006142 9.3e-37 157.5 148 54.1
Lsat_1_v5_gn_1_22101 Lactuca sativa HOM05D005090 ORTHO05D006142 1.6e-36 156.8 184 47.3
Haze_18064 Corylus avellana HOM05D005090 ORTHO05D006142 3.5e-36 155.6 124 61.3
Lj4C63T3 Lonicera japonica HOM05D005090 ORTHO05D006142 1.7e-35 153.3 122 61.5
Hma1.2p1_0634F.1_g193080 Hydrangea macrophylla HOM05D005090 ORTHO05D006142 2.3e-35 152.9 178 47.2
Manes.05G176500 Manihot esculenta HOM05D005090 ORTHO05D006142 3.0e-35 152.5 124 62.1
Os02g0158600 Oryza sativa ssp. japonica HOM05D005090 ORTHO05D006142 1.9e-34 149.8 141 52.5
HanXRQChr05g0150671 Helianthus annuus HOM05D005090 ORTHO05D006142 4.3e-34 148.7 165 47.3
Zm00001eb232600 Zea mays HOM05D005090 ORTHO05D006142 4.3e-34 148.7 168 47.0
Migut.C00536 Erythranthe guttata HOM05D005090 ORTHO05D006142 1.6e-33 146.7 181 48.1
SEGI_34157 Sequoiadendron giganteum HOM05D005090 ORTHO05D006142 3.6e-33 145.6 141 53.2
unitig_26.g9810 Utricularia gibba HOM05D005090 ORTHO05D006142 1.4e-32 143.7 177 45.8
ECA247G1795 Erigeron canadensis HOM05D005090 ORTHO05D006142 6.9e-32 141.4 135 51.9
MD17G1062600 Malus domestica HOM05D005090 ORTHO05D006142 2.0e-31 139.8 128 57.8
Oeu037620.1 Olea europaea HOM05D005090 ORTHO05D006142 3.4e-31 139.0 120 52.5
EL10As7g23770 Beta vulgaris HOM05D005090 ORTHO05D006142 5.8e-31 138.3 153 49.0
SGA_v2.0_scaffold197G41030 Striga asiatica HOM05D005090 ORTHO05D006142 1.9e-29 133.3 202 39.1
Nitab4.5_0012973g0030 Nicotiana tabacum HOM05D005090 ORTHO05D006142 6.0e-28 128.3 122 50.0
BcaC02g09103 Brassica carinata HOM05D005090 ORTHO05D006142 3.9e-27 125.6 88 77.3
Pp3c14_4680 Physcomitrium patens HOM05D005090 ORTHO05D006142 4.3e-26 122.1 148 43.9
Pp3c14_4740 Physcomitrium patens HOM05D005090 ORTHO05D006142 4.3e-26 122.1 148 43.9
C04p38460 Brassica napus HOM05D005090 ORTHO05D006142 7.4e-26 121.3 88 75.0
BolC6t37479H Brassica oleracea HOM05D005090 ORTHO05D006142 7.4e-26 121.3 88 76.1
BcaC03g17171 Brassica carinata HOM05D005090 ORTHO05D006142 1.3e-25 120.6 88 76.1
BolC2t11185H Brassica oleracea HOM05D005090 ORTHO05D006142 1.3e-25 120.6 88 76.1
Pp3c10_3910 Physcomitrium patens HOM05D005090 ORTHO05D006142 1.3e-25 120.6 155 43.2
Mapoly0121s0046 Marchantia polymorpha HOM05D005090 ORTHO05D006142 1.6e-25 120.2 151 42.4
TAR628G0694 Trochodendron aralioides HOM05D005090 ORTHO05D006142 4.8e-25 118.6 117 54.7
CsaV3_4G034590 Cucumis sativus L. HOM05D005090 ORTHO05D006142 8.1e-25 117.9 171 43.9
C02p38970 Brassica napus HOM05D005090 ORTHO05D006142 3.1e-24 115.9 88 72.7
BolC2t09908H Brassica oleracea HOM05D005090 ORTHO05D006142 3.1e-24 115.9 88 72.7
vmacro04554 Vaccinium macrocarpon HOM05D005090 ORTHO05D006142 1.2e-23 114.0 261 31.4
Sc02g0007470 Simmondsia chinensis HOM05D005090 ORTHO05D006142 2.0e-23 113.2 168 38.7
EL10As7g23766 Beta vulgaris HOM05D005090 ORTHO05D006142 2.6e-23 112.8 128 47.7
EL10As7g23771 Beta vulgaris HOM05D005090 ORTHO05D006142 2.6e-23 112.8 128 47.7
AagrBONN_evm.TU.Sc2ySwM_340.334 Anthoceros agrestis HOM05D005090 ORTHO05D006142 1.0e-22 110.9 140 42.9
SMO140G0004 Selaginella moellendorffii HOM05D002426 ORTHO05D002873 4.9e-22 108.6 201 36.3
Nitab4.5_0005621g0060 Nicotiana tabacum HOM05D005090 ORTHO05D006142 2.7e-20 102.8 102 47.1
AUR62044449 Chenopodium quinoa HOM05D005090 ORTHO05D006142 3.0e-19 99.4 119 48.7
EL10As7g23765 Beta vulgaris HOM05D005090 ORTHO05D006142 2.0e-15 86.7 113 45.1
CBR_g12766 Chara braunii HOM05D005090 ORTHO05D006142 1.0e-14 84.3 168 34.5
BcaB04g18128 Brassica carinata HOM05D005090 ORTHO05D006142 1.9e-13 80.1 62 79.0
MD06G1210300 Malus domestica HOM05D005090 ORTHO05D006142 1.0e-11 74.3 82 48.8
Sabra02G0096800 Salix brachista HOM05D005090 ORTHO05D006142 1.5e-07 60.5 48 60.4
Sabra02G0096900 Salix brachista HOM05D005090 ORTHO05D006142 2.0e-07 60.1 60 50.0


User provided reference genes

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