Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0720 Capsella rubella HOM05D005726 ORTHO05D001733 7.2e-69 263.8 138 100.0
AT5G42146 Arabidopsis thaliana HOM05D005726 ORTHO05D001733 3.4e-63 245.0 138 92.8
AL8G19700 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 2.2e-62 242.3 138 90.6
AL8G19720 Arabidopsis lyrata HOM05D005726 ORTHO05D001733 8.5e-62 240.4 138 89.9
BcaB07g31777 Brassica carinata HOM05D005726 ORTHO05D001733 5.7e-58 227.6 138 82.6
BcaC04g23031 Brassica carinata HOM05D005726 ORTHO05D001733 5.7e-58 227.6 138 82.6
C09p12890 Brassica napus HOM05D005726 ORTHO05D001733 5.7e-58 227.6 138 82.6
BolC9t54179H Brassica oleracea HOM05D005726 ORTHO05D001733 6.3e-57 224.2 138 81.9
A09p10920 Brassica napus HOM05D005726 ORTHO05D001733 1.8e-56 222.6 138 79.7
BraA09t36732Z Brassica rapa HOM05D005726 ORTHO05D001733 1.8e-56 222.6 138 79.7
Sp2g14650 Schrenkiella parvula HOM05D005726 ORTHO05D001733 1.7e-54 216.1 138 77.5
CARHR284740 Cardamine hirsuta HOM05D005726 ORTHO05D001733 8.5e-54 213.8 138 78.3
THA.LOC104821582 Tarenaya hassleriana HOM05D005726 ORTHO05D001733 4.2e-45 184.9 138 67.4
Thhalv10015257m.g Eutrema salsugineum HOM05D005726 ORTHO05D001733 9.8e-42 173.7 139 68.3
C02p51810 Brassica napus HOM05D005726 ORTHO05D001733 3.7e-41 171.8 119 77.3
A02p33660 Brassica napus HOM05D005726 ORTHO05D001733 1.8e-40 169.5 119 76.5
BraA02t08386Z Brassica rapa HOM05D005726 ORTHO05D001733 4.1e-40 168.3 119 75.6
BcaC03g17246 Brassica carinata HOM05D005726 ORTHO05D001733 1.2e-39 166.8 119 74.8
BolC2t11266H Brassica oleracea HOM05D005726 ORTHO05D001733 1.2e-39 166.8 119 74.8
Atru.chr5.3224 Acer truncatum HOM05D005726 ORTHO05D001733 1.0e-22 110.5 136 44.1
Nn1g05896 Nelumbo nucifera HOM05D005726 ORTHO05D001733 1.1e-21 107.1 134 40.3
Thecc.08G044700 Theobroma cacao HOM05D005726 ORTHO05D001733 1.1e-21 107.1 137 41.6
QL02p011637 Quercus lobata HOM05D005726 ORTHO05D001733 5.6e-21 104.8 137 44.5
Sed0021833 Sechium edule HOM05D005726 ORTHO05D001733 9.5e-21 104.0 137 41.6
CiPaw.07G149600 Carya illinoinensis HOM05D005726 ORTHO05D001733 1.2e-20 103.6 137 40.9
Prupe.8G160400 Prunus persica HOM05D005726 ORTHO05D001733 3.6e-20 102.1 139 46.0
TAR625G1501 Trochodendron aralioides HOM05D005726 ORTHO05D001733 3.6e-20 102.1 134 41.8
MD05G1115600 Malus domestica HOM05D005726 ORTHO05D001733 4.7e-20 101.7 138 42.8
RcHm_v2.0_Chr6g0245271 Rosa chinensis HOM05D005726 ORTHO05D001733 6.1e-20 101.3 135 41.5
Gorai.010G004200 Gossypium raimondii HOM05D005726 ORTHO05D001733 8.0e-20 100.9 137 40.9
Potri.009G129301 Populus trichocarpa HOM05D005726 ORTHO05D001733 1.0e-19 100.5 135 41.5
Cfa013952 Carpinus fangiana HOM05D005726 ORTHO05D001733 1.4e-19 100.1 137 40.9
TAR376G0138 Trochodendron aralioides HOM05D005726 ORTHO05D001733 1.4e-19 100.1 127 44.9
Gohir.D06G006900 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.8e-19 99.8 137 40.1
Manes.05G147300 Manihot esculenta HOM05D005726 ORTHO05D001733 1.8e-19 99.8 137 43.1
Gohir.A06G004000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 3.1e-19 99.0 137 39.4
MBI05_g33718_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 6.8e-19 97.8 134 39.6
CANSAT01G1229 Cannabis sativa HOM05D005726 ORTHO05D001733 1.5e-18 96.7 148 37.8
CiPaw.05G077000 Carya illinoinensis HOM05D005726 ORTHO05D001733 1.5e-18 96.7 134 39.6
Glyma.04G024200 Glycine max HOM05D005726 ORTHO05D001733 1.5e-18 96.7 142 41.5
Migut.N01283 Erythranthe guttata HOM05D005726 ORTHO05D001733 2.0e-18 96.3 142 41.5
Potri.004G167800 Populus trichocarpa HOM05D005726 ORTHO05D001733 2.6e-18 95.9 135 40.0
Haze_02200 Corylus avellana HOM05D005726 ORTHO05D001733 4.4e-18 95.1 134 40.3
Atru.chr13.290 Acer truncatum HOM05D005726 ORTHO05D001733 5.8e-18 94.7 141 36.9
Haze_22635 Corylus avellana HOM05D005726 ORTHO05D001733 5.8e-18 94.7 137 39.4
MD10G1118100 Malus domestica HOM05D005726 ORTHO05D001733 7.5e-18 94.4 138 42.8
RcHm_v2.0_Chr6g0302871 Rosa chinensis HOM05D005726 ORTHO05D001733 9.8e-18 94.0 127 44.9
Thecc.02G067200 Theobroma cacao HOM05D005726 ORTHO05D001733 9.8e-18 94.0 134 38.1
Cfa005182 Carpinus fangiana HOM05D005726 ORTHO05D001733 1.3e-17 93.6 137 39.4
TWI56G0219 Tripterygium wilfordii HOM05D005726 ORTHO05D001733 1.3e-17 93.6 137 42.3
Duzib132G0889 Durio zibethinus HOM05D005726 ORTHO05D001733 1.7e-17 93.2 133 39.1
MD08G1013100 Malus domestica HOM05D005726 ORTHO05D001733 1.7e-17 93.2 138 42.0
Oeu037538.1 Olea europaea HOM05D005726 ORTHO05D001733 1.7e-17 93.2 134 38.1
Cpa.g.sc26.44 Carica papaya HOM05D005726 ORTHO05D001733 2.2e-17 92.8 130 42.3
Ciclev10029543m.g Citrus clementina HOM05D005726 ORTHO05D001733 2.9e-17 92.4 142 36.6
Potri.002G022100 Populus trichocarpa HOM05D005726 ORTHO05D001733 3.7e-17 92.0 135 36.3
Ciclev10029854m.g Citrus clementina HOM05D005726 ORTHO05D001733 4.9e-17 91.7 141 38.3
COL.COLO4_17253 Corchorus olitorius HOM05D005726 ORTHO05D001733 4.9e-17 91.7 134 35.8
Cpa.g.sc37.193 Carica papaya HOM05D005726 ORTHO05D001733 8.3e-17 90.9 134 38.1
PSO170G6562 Papaver somniferum HOM05D005726 ORTHO05D001733 1.4e-16 90.1 146 37.0
Ciclev10003161m.g Citrus clementina HOM05D005726 ORTHO05D001733 2.4e-16 89.4 138 39.9
Nn5g30142 Nelumbo nucifera HOM05D005726 ORTHO05D001733 2.4e-16 89.4 136 36.0
Oeu027542.1 Olea europaea HOM05D005726 ORTHO05D001733 2.4e-16 89.4 134 38.1
Phvul.009G017000 Phaseolus vulgaris HOM05D005726 ORTHO05D001733 4.1e-16 88.6 135 37.0
Sopen04g035070 Solanum pennellii HOM05D005726 ORTHO05D001733 5.4e-16 88.2 140 39.3
PGSC0003DMG400009937 Solanum tuberosum HOM05D005726 ORTHO05D001733 5.4e-16 88.2 140 39.3
VMungo1309G2498 Vigna mungo HOM05D005726 ORTHO05D001733 5.4e-16 88.2 135 39.3
FAN04G1699 Fragaria x ananassa HOM05D005726 ORTHO05D001733 2.0e-15 86.3 117 38.5
DCAR_003698 Daucus carota HOM05D005726 ORTHO05D001733 2.7e-15 85.9 136 37.5
QL11p047517 Quercus lobata HOM05D005726 ORTHO05D001733 3.5e-15 85.5 134 40.3
CsaV3_2G029540 Cucumis sativus L. HOM05D005726 ORTHO05D001733 4.6e-15 85.1 137 36.5
Gohir.A12G039400 Gossypium hirsutum HOM05D005726 ORTHO05D001733 6.0e-15 84.7 134 36.6
Nitab4.5_0002561g0020 Nicotiana tabacum HOM05D005726 ORTHO05D001733 1.0e-14 84.0 134 36.6
Gohir.D12G033000 Gossypium hirsutum HOM05D005726 ORTHO05D001733 1.3e-14 83.6 141 36.9
Gorai.008G033800 Gossypium raimondii HOM05D005726 ORTHO05D001733 1.3e-14 83.6 141 36.9
Actinidia00594 Actinidia chinensis HOM05D005726 ORTHO05D001733 2.3e-14 82.8 120 39.2
Lalb_Chr11g0061921 Lupinus albus HOM05D005726 ORTHO05D001733 3.9e-14 82.0 137 35.0
ATR0810G150 Amborella trichopoda HOM05D005726 ORTHO05D001733 5.0e-14 81.6 134 38.1
Eucgr.F00586 Eucalyptus grandis HOM05D005726 ORTHO05D001733 5.0e-14 81.6 135 34.8
MBI05_g46327_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 8.6e-14 80.9 121 38.0
Sabra09G0098800 Salix brachista HOM05D005726 ORTHO05D001733 8.6e-14 80.9 126 36.5
CANSAT25G0582 Cannabis sativa HOM05D005726 ORTHO05D001733 1.5e-13 80.1 135 34.1
Cc02_g16550 Coffea canephora HOM05D005726 ORTHO05D001733 7.3e-13 77.8 134 38.8
ClCG05G018250 Citrullus lanatus HOM05D005726 ORTHO05D001733 4.7e-12 75.1 135 37.0
PGR031G2508 Punica granatum HOM05D005726 ORTHO05D001733 8.1e-12 74.3 136 33.8
Manes.04G078400 Manihot esculenta HOM05D005726 ORTHO05D001733 2.3e-11 72.8 135 34.8
Sed0014638 Sechium edule HOM05D005726 ORTHO05D001733 5.2e-11 71.6 130 35.4
Lsat_1_v5_gn_2_9581 Lactuca sativa HOM05D005726 ORTHO05D001733 6.8e-11 71.2 137 34.3
CsaV3_3G045890 Cucumis sativus L. HOM05D005726 ORTHO05D001733 1.2e-10 70.5 135 34.8
Sed0014046 Sechium edule HOM05D005726 ORTHO05D001733 2.0e-10 69.7 129 36.4
SHI08068 Sapria himalayana HOM05D005726 ORTHO05D001733 3.4e-10 68.9 110 39.1
Sed0019554 Sechium edule HOM05D005726 ORTHO05D001733 7.5e-10 67.8 130 33.1
Prupe.1G365100 Prunus persica HOM05D005726 ORTHO05D001733 9.8e-10 67.4 139 33.1
MELO3C003749.2 Cucumis melo HOM05D005726 ORTHO05D001733 2.2e-09 66.2 135 32.6
TPR.G34542 Trifolium pratense HOM05D005726 ORTHO05D001733 6.4e-09 64.7 115 36.5
Ah.11g039720 Amaranthus hybridus HOM05D005726 ORTHO05D001733 8.3e-09 64.3 128 37.5
Gorai.004G017800 Gossypium raimondii HOM05D003064 ORTHO05D001733 1.1e-08 63.9 111 36.0
MELO3C020779.2 Cucumis melo HOM05D005726 ORTHO05D001733 1.4e-08 63.5 132 34.8
Gohir.D08G022500 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.9e-08 63.2 111 36.0
Medtr3g113930 Medicago truncatula HOM05D005726 ORTHO05D001733 1.9e-08 63.2 115 36.5
THA.LOC104807528 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 1.9e-08 63.2 110 32.7
Migut.N03162 Erythranthe guttata HOM05D005726 ORTHO05D001733 2.4e-08 62.8 134 30.6
Gohir.A08G012000 Gossypium hirsutum HOM05D003064 ORTHO05D001733 2.4e-08 62.8 111 36.0
Nn2g15754 Nelumbo nucifera HOM05D003064 ORTHO05D001733 3.2e-08 62.4 110 32.7
Peaxi162Scf00400g00087 Petunia axillaris HOM05D005726 ORTHO05D001733 3.2e-08 62.4 120 30.8
Migut.C00838 Erythranthe guttata HOM05D005726 ORTHO05D001733 4.1e-08 62.0 123 32.5
Peaxi162Scf00438g00833 Petunia axillaris HOM05D005726 ORTHO05D001733 5.4e-08 61.6 138 33.3
MBI05_g46324_MAGBIO Magnolia biondii HOM05D005726 ORTHO05D001733 9.2e-08 60.8 133 30.8
Solyc04g081460.2 Solanum lycopersicum HOM05D005726 ORTHO05D001733 9.2e-08 60.8 61 49.2
TPR.G38487 Trifolium pratense HOM05D005726 ORTHO05D001733 1.2e-07 60.5 81 39.5
TAR369G0713 Trochodendron aralioides HOM05D003064 ORTHO05D001733 1.2e-07 60.5 113 35.4
TAR623G1618 Trochodendron aralioides HOM05D003064 ORTHO05D001733 4.6e-07 58.5 115 33.9
ClCG02G004310 Citrullus lanatus HOM05D007714 ORTHO05D009659 6.0e-07 58.2 110 34.5
TPR.G16147 Trifolium pratense HOM05D003064 ORTHO05D001733 6.0e-07 58.2 115 33.0
Prupe.6G010700 Prunus persica HOM05D003064 ORTHO05D001733 7.8e-07 57.8 109 32.1
Gohir.A13G213900 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.0e-06 57.4 110 32.7
Gohir.D13G217700 Gossypium hirsutum HOM05D003064 ORTHO05D001733 1.0e-06 57.4 110 32.7
Gorai.013G248300 Gossypium raimondii HOM05D003064 ORTHO05D001733 1.0e-06 57.4 110 32.7
CsaV3_2G015680 Cucumis sativus L. HOM05D005726 ORTHO05D001733 1.3e-06 57.0 132 33.3
BcaB07g30277 Brassica carinata HOM05D005726 ORTHO05D001733 1.7e-06 56.6 36 80.6
MELO3C014664.2 Cucumis melo HOM05D003064 ORTHO05D001733 1.7e-06 56.6 108 31.5
TAR633G1282 Trochodendron aralioides HOM05D003064 ORTHO05D001733 1.7e-06 56.6 123 30.1
ClCG02G023860 Citrullus lanatus HOM05D003064 ORTHO05D001733 2.3e-06 56.2 108 33.3
Glyma.12G024300 Glycine max HOM05D005726 ORTHO05D001733 2.3e-06 56.2 82 39.0
Aa31LG5G5080 Aethionema arabicum HOM05D003064 ORTHO05D001733 3.0e-06 55.8 111 32.4
Eucgr.B03628 Eucalyptus grandis HOM05D003064 ORTHO05D001733 3.0e-06 55.8 107 34.6
TWI38G0681 Tripterygium wilfordii HOM05D003064 ORTHO05D001733 3.0e-06 55.8 111 34.2
Ca_03208_v3 Cicer arietinum L. HOM05D003064 ORTHO05D001733 3.9e-06 55.5 116 34.5
DCAR_006051 Daucus carota HOM05D005726 ORTHO05D001733 3.9e-06 55.5 117 30.8
FAN16G3363 Fragaria x ananassa HOM05D003064 ORTHO05D001733 3.9e-06 55.5 107 30.8
PGR042G3858 Punica granatum HOM05D005726 ORTHO05D001733 3.9e-06 55.5 146 35.6
Sed0013832 Sechium edule HOM05D007714 ORTHO05D009659 3.9e-06 55.5 111 32.4
THA.LOC104811059 Tarenaya hassleriana HOM05D003064 ORTHO05D001733 3.9e-06 55.5 110 33.6
Cfa010704 Carpinus fangiana HOM05D003064 ORTHO05D001733 5.1e-06 55.1 112 33.9
MD11G1012600 Malus domestica HOM05D003064 ORTHO05D001733 5.1e-06 55.1 109 31.2
FAN25G3035 Fragaria x ananassa HOM05D003064 ORTHO05D001733 6.6e-06 54.7 107 30.8
Medtr5g084240 Medicago truncatula HOM05D003064 ORTHO05D001733 6.6e-06 54.7 108 31.5
Sabra09G0016100 Salix brachista HOM05D003064 ORTHO05D001733 6.6e-06 54.7 116 33.6
SalBow8G4445 Salvia bowleyana HOM05D005726 ORTHO05D001733 6.6e-06 54.7 135 29.6
Duzib150G0559 Durio zibethinus HOM05D003064 ORTHO05D001733 8.6e-06 54.3 110 32.7
FAN21G3633 Fragaria x ananassa HOM05D003064 ORTHO05D001733 8.6e-06 54.3 107 29.9
Medtr2g062220 Medicago truncatula HOM05D003064 ORTHO05D001733 8.6e-06 54.3 116 33.6
Thecc.09G214300 Theobroma cacao HOM05D003064 ORTHO05D001733 8.6e-06 54.3 110 30.9


User provided reference genes

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