Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0699 Capsella rubella HOM05D008895 ORTHO05D010761 3.1e-43 177.9 82 100.0
AT5G42232 Arabidopsis thaliana HOM05D008895 ORTHO05D010761 1.2e-26 122.9 81 69.1
AL8G19410 Arabidopsis lyrata HOM05D008895 ORTHO05D010761 8.7e-22 106.7 83 62.7
AL8G19420 Arabidopsis lyrata HOM05D008895 ORTHO05D010761 8.7e-22 106.7 83 62.7
AL8G19452 Arabidopsis lyrata HOM05D008895 ORTHO05D010761 8.7e-22 106.7 83 62.7
AL8G19400 Arabidopsis lyrata HOM05D008895 ORTHO05D010761 7.4e-21 103.6 83 61.4
AL8G19430 Arabidopsis lyrata HOM05D008895 ORTHO05D010761 2.1e-20 102.1 83 60.2
Carub.0008s0698 Capsella rubella HOM05D008895 ORTHO05D010761 5.3e-19 97.4 79 54.4
AT2G12465 Arabidopsis thaliana HOM05D008895 ORTHO05D010761 2.9e-17 91.7 83 53.0
CARHR028360 Cardamine hirsuta HOM05D009058 ORTHO05D010761 1.1e-16 89.7 80 55.0
Carub.0003s2779 Capsella rubella HOM05D008895 ORTHO05D010761 1.6e-15 85.9 84 56.0
AT2G12475 Arabidopsis thaliana HOM05D008895 ORTHO05D010761 6.7e-14 80.5 86 50.0
AT5G42235 Arabidopsis thaliana HOM05D008895 ORTHO05D010761 1.1e-13 79.7 83 49.4
Carub.0003s3322 Capsella rubella HOM05D008895 ORTHO05D010761 1.5e-13 79.3 80 47.5
AL8G19480 Arabidopsis lyrata HOM05D009997 ORTHO05D038671 3.3e-13 78.2 89 49.4
AL2G17930 Arabidopsis lyrata HOM05D008895 ORTHO05D010761 3.7e-12 74.7 82 46.3
AT5G27495 Arabidopsis thaliana HOM05D008895 ORTHO05D031419 3.1e-11 71.6 83 50.6
BcaB03g14524 Brassica carinata HOM05D009997 ORTHO05D013470 5.3e-11 70.9 87 43.7
BolC7t42591H Brassica oleracea HOM05D009997 ORTHO05D011114 6.9e-11 70.5 83 44.6
CARHR052530 Cardamine hirsuta HOM05D008895 ORTHO05D010761 6.9e-11 70.5 81 43.2
AT1G58055 Arabidopsis thaliana HOM05D008895 ORTHO05D010761 2.0e-10 68.9 77 44.2
Thhalv10012291m.g Eutrema salsugineum HOM05D009997 ORTHO05D013470 2.0e-10 68.9 81 44.4
AT2G40995 Arabidopsis thaliana HOM05D009157 ORTHO05D011114 3.4e-10 68.2 80 43.8
AL1G27870 Arabidopsis lyrata HOM05D009997 ORTHO05D013470 5.8e-10 67.4 81 45.7
AL872U10010 Arabidopsis lyrata HOM05D009157 ORTHO05D011114 5.8e-10 67.4 81 45.7
AL6G39510 Arabidopsis lyrata HOM05D008895 ORTHO05D031419 7.6e-10 67.0 82 48.8
CARHR136110 Cardamine hirsuta HOM05D009157 ORTHO05D011114 2.2e-09 65.5 79 44.3
Thhalv10015154m.g Eutrema salsugineum HOM05D009997 ORTHO05D013470 3.8e-09 64.7 81 43.2
A08p15980 Brassica napus HOM05D008895 ORTHO05D012825 5.0e-09 64.3 81 40.7
BraA08t33570Z Brassica rapa HOM05D008895 ORTHO05D012825 5.0e-09 64.3 81 40.7
Thhalv10017522m.g Eutrema salsugineum HOM05D008895 ORTHO05D010761 5.0e-09 64.3 71 45.1
C03p13920 Brassica napus HOM05D009997 ORTHO05D013470 8.4e-09 63.5 82 40.2
Carub.0001s1553 Capsella rubella HOM05D009997 ORTHO05D013470 8.4e-09 63.5 86 45.3
A03p11850 Brassica napus HOM05D009997 ORTHO05D013470 1.4e-08 62.8 82 40.2
C03p55210 Brassica napus HOM05D008895 ORTHO05D012825 1.9e-08 62.4 77 40.3
C05p19330 Brassica napus HOM05D009157 ORTHO05D011114 1.9e-08 62.4 79 36.7
BolC3t17794H Brassica oleracea HOM05D008895 ORTHO05D012825 1.9e-08 62.4 77 40.3
A03p44450 Brassica napus HOM05D008895 ORTHO05D012825 2.5e-08 62.0 77 40.3
BolC3t20732H Brassica oleracea HOM05D008895 ORTHO05D012825 2.5e-08 62.0 81 39.5
BraA03t13578Z Brassica rapa HOM05D008895 ORTHO05D012825 2.5e-08 62.0 77 40.3
BraA06t24778Z Brassica rapa HOM05D009157 ORTHO05D011114 2.5e-08 62.0 79 38.0
Sp1g14050 Schrenkiella parvula HOM05D009997 ORTHO05D013470 2.5e-08 62.0 87 41.4
AT1G15757 Arabidopsis thaliana HOM05D009997 ORTHO05D013470 3.2e-08 61.6 81 44.4
BraA03t10496Z Brassica rapa HOM05D009997 ORTHO05D013470 3.2e-08 61.6 82 39.0
Carub.0003s2778 Capsella rubella HOM05D009997 ORTHO05D013532 4.2e-08 61.2 88 42.0
Carub.0007s3316 Capsella rubella HOM05D009997 ORTHO05D013470 4.2e-08 61.2 86 41.9
BcaC07g41482 Brassica carinata HOM05D009997 ORTHO05D013470 5.5e-08 60.8 90 40.0
C03p55150 Brassica napus HOM05D008895 ORTHO05D012825 5.5e-08 60.8 77 39.0
C03p55220 Brassica napus HOM05D008895 ORTHO05D012825 5.5e-08 60.8 77 39.0
C08p44800 Brassica napus HOM05D009997 ORTHO05D013470 5.5e-08 60.8 90 40.0
BolC3t13839H Brassica oleracea HOM05D009997 ORTHO05D013470 5.5e-08 60.8 82 39.0
BolC3t17787H Brassica oleracea HOM05D008895 ORTHO05D012825 5.5e-08 60.8 77 39.0
BolC3t17795H Brassica oleracea HOM05D008895 ORTHO05D012825 5.5e-08 60.8 77 39.0
BolC8t52025H Brassica oleracea HOM05D009997 ORTHO05D013470 5.5e-08 60.8 90 40.0
C03p55160 Brassica napus HOM05D008895 ORTHO05D012825 7.1e-08 60.5 77 39.0
C03p55190 Brassica napus HOM05D008895 ORTHO05D012825 7.1e-08 60.5 77 39.0
C03p55200 Brassica napus HOM05D008895 ORTHO05D012825 7.1e-08 60.5 77 39.0
BolC3t17788H Brassica oleracea HOM05D008895 ORTHO05D012825 7.1e-08 60.5 77 39.0
BolC3t17792H Brassica oleracea HOM05D008895 ORTHO05D012825 7.1e-08 60.5 77 39.0
Carub.0003s2867 Capsella rubella HOM05D009157 ORTHO05D011114 1.2e-07 59.7 82 36.6
BraA09t41495Z Brassica rapa HOM05D009997 ORTHO05D013470 1.0e-06 56.6 90 40.0
Carub.0005s0711 Capsella rubella HOM05D009157 ORTHO05D011114 1.0e-06 56.6 85 37.6
A09p61230 Brassica napus HOM05D009997 ORTHO05D013470 5.1e-06 54.3 90 38.9
AL4G38970 Arabidopsis lyrata HOM05D009157 ORTHO05D031338 8.7e-06 53.5 83 33.7


User provided reference genes

Program Settings