Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0691 Capsella rubella HOM05D008020 ORTHO05D010140 6.6e-51 203.8 103 100.0
AT5G42290 Arabidopsis thaliana HOM05D008020 ORTHO05D010140 2.4e-37 158.7 109 78.0
AL8G19330 Arabidopsis lyrata HOM05D008020 ORTHO05D010140 4.1e-37 157.9 110 79.1
Thhalv10009649m.g Eutrema salsugineum HOM05D008020 ORTHO05D010140 2.3e-32 142.1 112 68.8
Sp7g08310 Schrenkiella parvula HOM05D008020 ORTHO05D010140 2.3e-32 142.1 112 68.8
Thhalv10028031m.g Eutrema salsugineum HOM05D008020 ORTHO05D010140 8.9e-32 140.2 112 67.9
BolC3t15181H Brassica oleracea HOM05D008020 ORTHO05D010140 9.9e-31 136.7 112 69.6
BcaC01g05309 Brassica carinata HOM05D008020 ORTHO05D010140 1.3e-30 136.3 109 67.9
CARHR284890 Cardamine hirsuta HOM05D008020 ORTHO05D010140 1.7e-30 136.0 112 69.6
C03p28110 Brassica napus HOM05D008020 ORTHO05D010140 1.1e-29 133.3 112 67.0
BcaB01g03440 Brassica carinata HOM05D008020 ORTHO05D010140 6.0e-28 127.5 109 65.1
Gohir.A01G106700 Gossypium hirsutum HOM05D008020 ORTHO05D010140 1.1e-21 106.7 103 61.2
Gohir.D01G093200 Gossypium hirsutum HOM05D008020 ORTHO05D010140 4.2e-21 104.8 103 61.2
Gorai.002G118600 Gossypium raimondii HOM05D008020 ORTHO05D010140 9.2e-21 103.6 103 60.2
Lsat_1_v5_gn_9_44980 Lactuca sativa HOM05D008020 ORTHO05D010140 2.7e-20 102.1 80 66.2
Rhsim06G0008300 Rhododendron simsii HOM05D008020 ORTHO05D010140 4.6e-20 101.3 102 58.8
Oeu056212.1 Olea europaea HOM05D008020 ORTHO05D010140 6.0e-20 100.9 101 60.4
COL.COLO4_03997 Corchorus olitorius HOM05D008020 ORTHO05D010140 7.8e-20 100.5 103 57.3
COL.COLO4_00185 Corchorus olitorius HOM05D008020 ORTHO05D010140 1.3e-19 99.8 103 57.3
Migut.C00948 Erythranthe guttata HOM05D008020 ORTHO05D010140 1.3e-19 99.8 86 65.1
Migut.C00952 Erythranthe guttata HOM05D008020 ORTHO05D010140 1.3e-19 99.8 86 65.1
HanXRQChr15g0492771 Helianthus annuus HOM05D008020 ORTHO05D010140 2.3e-19 99.0 81 64.2
Thecc.08G057500 Theobroma cacao HOM05D008020 ORTHO05D010140 6.6e-19 97.4 100 57.0
Duzib041G0109 Durio zibethinus HOM05D008020 ORTHO05D010140 9.6e-18 93.6 101 55.4
Nn6g31749 Nelumbo nucifera HOM05D008020 ORTHO05D010140 9.6e-18 93.6 98 56.1
Haze_22756 Corylus avellana HOM05D008020 ORTHO05D010140 1.3e-17 93.2 100 57.0
Glyma.04G018700 Glycine max HOM05D008020 ORTHO05D010140 2.1e-17 92.4 97 54.6
Actinidia29785 Actinidia chinensis HOM05D008020 ORTHO05D010140 3.6e-17 91.7 100 56.0
Aa31LG9G12400 Aethionema arabicum HOM05D008020 ORTHO05D010140 3.6e-17 91.7 103 54.4
Lj1g0023017 Lotus japonicus HOM05D008020 ORTHO05D010140 3.6e-17 91.7 97 53.6
Medtr3g115170 Medicago truncatula HOM05D008020 ORTHO05D010140 3.6e-17 91.7 103 53.4
PSO210G7351 Papaver somniferum HOM05D008020 ORTHO05D010140 3.6e-17 91.7 99 54.5
TWI56G1414 Tripterygium wilfordii HOM05D008020 ORTHO05D010140 3.6e-17 91.7 103 54.4
Glyma.06G019000 Glycine max HOM05D008020 ORTHO05D010140 6.2e-17 90.9 97 53.6
Os03g0133100 Oryza sativa ssp. japonica HOM05D008020 ORTHO05D010140 6.2e-17 90.9 87 55.2
Cpa.g.sc26.209 Carica papaya HOM05D008020 ORTHO05D010140 8.1e-17 90.5 103 53.4
SalBow7G2452 Salvia bowleyana HOM05D008020 ORTHO05D010140 8.1e-17 90.5 76 63.2
ECA232G3495 Erigeron canadensis HOM05D008020 ORTHO05D010140 1.1e-16 90.1 115 52.2
Psat5g011800 Pisum sativum HOM05D008020 ORTHO05D010140 2.4e-16 89.0 102 53.9
Eucgr.F03547 Eucalyptus grandis HOM05D008020 ORTHO05D010140 5.3e-16 87.8 79 57.0
MD15G1003000 Malus domestica HOM05D008020 ORTHO05D010140 5.3e-16 87.8 79 55.7
MELO3C017014.2 Cucumis melo HOM05D008020 ORTHO05D010140 2.6e-15 85.5 104 53.8
VMungo1309G2936 Vigna mungo HOM05D008020 ORTHO05D010140 2.6e-15 85.5 102 50.0
FvH4_2g37570 Fragaria vesca HOM05D008020 ORTHO05D010140 5.8e-15 84.3 110 49.1
Sc26g0004630 Simmondsia chinensis HOM05D008020 ORTHO05D010140 9.9e-15 83.6 104 51.0
Zm00001eb402590 Zea mays HOM05D008020 ORTHO05D010140 9.9e-15 83.6 84 56.0
Phvul.009G021900 Phaseolus vulgaris HOM05D008020 ORTHO05D010140 1.3e-14 83.2 103 48.5
ClCG11G018630 Citrullus lanatus HOM05D008020 ORTHO05D010140 1.7e-14 82.8 101 49.5
Cfa014061 Carpinus fangiana HOM05D008020 ORTHO05D010140 2.2e-14 82.4 76 61.8
FAN15G1770 Fragaria x ananassa HOM05D008020 ORTHO05D010140 2.2e-14 82.4 107 49.5
CDE05G0785 Ceratophyllum demersum HOM05D008020 ORTHO05D010140 2.9e-14 82.0 102 52.9
unitig_0.g2104 Utricularia gibba HOM05D008020 ORTHO05D010140 3.8e-14 81.6 82 61.0
Ah.00g000390 Amaranthus hybridus HOM05D008020 ORTHO05D010140 4.9e-14 81.3 117 47.9
Manes.05G135100 Manihot esculenta HOM05D008020 ORTHO05D010140 6.4e-14 80.9 102 52.9
TAR625G0930 Trochodendron aralioides HOM05D008020 ORTHO05D010140 6.4e-14 80.9 76 59.2
arahy.Tifrunner.gnm1.ann1.IQ4KFY Arachis hypogaea HOM05D008020 ORTHO05D010140 8.4e-14 80.5 105 50.5
EL10Ac1g01981 Beta vulgaris HOM05D008020 ORTHO05D010140 8.4e-14 80.5 86 55.8
ATR0106G002 Amborella trichopoda HOM05D008020 ORTHO05D010140 1.1e-13 80.1 103 50.5
Lalb_Chr11g0061691 Lupinus albus HOM05D008020 ORTHO05D010140 7.1e-13 77.4 98 53.1
RcHm_v2.0_Chr6g0304161 Rosa chinensis HOM05D008020 ORTHO05D010140 1.2e-12 76.6 102 49.0
Ca_15441_v3 Cicer arietinum L. HOM05D008020 ORTHO05D010140 2.7e-12 75.5 102 48.0
CsaV3_4G037160 Cucumis sativus L. HOM05D008020 ORTHO05D010140 8.7e-11 70.5 75 57.3
Atru.chr13.153 Acer truncatum HOM05D008020 ORTHO05D010140 1.9e-10 69.3 87 51.7
AUR62036888 Chenopodium quinoa HOM05D008020 ORTHO05D010140 2.5e-10 68.9 76 52.6
AUR62043558 Chenopodium quinoa HOM05D008020 ORTHO05D010140 2.5e-10 68.9 76 52.6
SEGI_30631 Sequoiadendron giganteum HOM05D008020 ORTHO05D010140 2.5e-10 68.9 85 52.9
CSS0004036 Camellia sinensis var. sinensis HOM05D008020 ORTHO05D010140 4.3e-10 68.2 83 51.8
AagrBONN_evm.TU.Sc2ySwM_368.1603 Anthoceros agrestis HOM05D008020 ORTHO05D010140 4.0e-08 61.6 84 48.8
CSS0008844 Camellia sinensis var. sinensis HOM05D008020 ORTHO05D010140 4.0e-08 61.6 81 49.4
Pp3c20_23510 Physcomitrium patens HOM05D008020 ORTHO05D010140 4.5e-07 58.2 81 44.4
Ciclev10003459m.g Citrus clementina HOM05D008020 ORTHO05D010140 2.9e-06 55.5 83 44.6
Prupe.1G355200 Prunus persica HOM05D008020 ORTHO05D010140 8.4e-06 53.9 75 44.0


User provided reference genes

Program Settings