Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0686 Capsella rubella HOM05D005125 ORTHO05D006777 1.5e-250 869.0 424 100.0
AL8G19280 Arabidopsis lyrata HOM05D005125 ORTHO05D006777 7.5e-234 813.5 424 94.8
AT5G42320 Arabidopsis thaliana HOM05D005125 ORTHO05D006777 3.2e-229 798.1 428 92.3
CARHR284930 Cardamine hirsuta HOM05D005125 ORTHO05D006777 5.7e-226 787.3 426 89.9
Sp7g08250 Schrenkiella parvula HOM05D005125 ORTHO05D006777 7.2e-221 770.4 422 89.1
BcaB07g31085 Brassica carinata HOM05D005125 ORTHO05D006777 1.5e-218 762.7 419 89.5
A09p19570 Brassica napus HOM05D005125 ORTHO05D006777 1.6e-215 752.7 419 88.5
BcaC04g22006 Brassica carinata HOM05D005125 ORTHO05D006777 2.0e-215 752.3 419 88.1
C09p24930 Brassica napus HOM05D005125 ORTHO05D006777 2.0e-215 752.3 419 88.1
BraA09t37570Z Brassica rapa HOM05D005125 ORTHO05D006777 2.7e-215 751.9 419 88.5
Aa31LG9G12440 Aethionema arabicum HOM05D005125 ORTHO05D006777 2.6e-210 735.3 441 82.8
THA.LOC104813172 Tarenaya hassleriana HOM05D005125 ORTHO05D006777 7.0e-208 727.2 423 84.6
Cpa.g.sc26.198 Carica papaya HOM05D005125 ORTHO05D006777 4.7e-188 661.4 421 76.5
Potri.002G010800 Populus trichocarpa HOM05D005125 ORTHO05D006777 6.4e-185 651.0 414 75.4
Potri.005G250300 Populus trichocarpa HOM05D005125 ORTHO05D006777 2.4e-184 649.0 412 76.5
Manes.05G134400 Manihot esculenta HOM05D005125 ORTHO05D006777 3.2e-184 648.7 398 77.6
Sabra05G0193900 Salix brachista HOM05D005125 ORTHO05D006777 3.2e-184 648.7 419 75.4
Duzib093G0577 Durio zibethinus HOM05D005125 ORTHO05D006777 2.3e-182 642.5 406 77.1
Manes.18G005400 Manihot esculenta HOM05D005125 ORTHO05D006777 9.6e-181 637.1 420 73.8
TWI56G0714 Tripterygium wilfordii HOM05D005125 ORTHO05D006777 3.6e-180 635.2 388 77.8
GSVIVG01013360001 Vitis vinifera HOM05D005125 ORTHO05D006777 3.6e-180 635.2 403 75.2
Gorai.002G117000 Gossypium raimondii HOM05D005125 ORTHO05D006777 4.7e-180 634.8 391 77.0
Gohir.D01G091900 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.4e-179 633.3 391 76.7
Gohir.A01G105600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 2.4e-179 632.5 409 74.1
Atru.chr13.135 Acer truncatum HOM05D005125 ORTHO05D006777 1.2e-178 630.2 404 74.5
Thecc.08G058900 Theobroma cacao HOM05D005125 ORTHO05D006777 1.2e-178 630.2 422 73.2
Thhalv10027780m.g Eutrema salsugineum HOM05D005125 ORTHO05D006777 3.4e-178 628.6 338 89.1
Ciclev10003241m.g Citrus clementina HOM05D005125 ORTHO05D006777 4.4e-178 628.2 427 72.1
Duzib116G0840 Durio zibethinus HOM05D005125 ORTHO05D006777 2.2e-177 625.9 395 76.5
Ca_15433_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 2.9e-177 625.5 412 73.8
FAN27G2626 Fragaria x ananassa HOM05D005125 ORTHO05D006777 1.9e-176 622.9 409 73.1
Cfa014076 Carpinus fangiana HOM05D005125 ORTHO05D006777 3.2e-176 622.1 419 72.1
CiPaw.07G138900 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.2e-175 620.2 420 72.6
FvH4_2g37450 Fragaria vesca HOM05D005125 ORTHO05D006777 1.2e-175 620.2 409 72.6
Lalb_Chr11g0061631 Lupinus albus HOM05D005125 ORTHO05D006777 1.2e-175 620.2 401 74.3
FAN20G1306 Fragaria x ananassa HOM05D005125 ORTHO05D006777 2.7e-175 619.0 409 72.6
MD15G1002000 Malus domestica HOM05D005125 ORTHO05D006777 4.6e-175 618.2 397 73.3
QL02p014036 Quercus lobata HOM05D005125 ORTHO05D006777 4.6e-175 618.2 395 74.4
CiPaw.08G073000 Carya illinoinensis HOM05D005125 ORTHO05D006777 1.3e-174 616.7 419 71.8
Prupe.1G354500 Prunus persica HOM05D005125 ORTHO05D006777 1.1e-173 613.6 393 74.0
FAN15G0126 Fragaria x ananassa HOM05D005125 ORTHO05D006777 3.3e-173 612.1 423 70.7
MD08G1002400 Malus domestica HOM05D005125 ORTHO05D006777 4.3e-173 611.7 397 72.5
Glyma.06G018200 Glycine max HOM05D005125 ORTHO05D006777 7.3e-173 610.9 405 73.6
Cc10_g00670 Coffea canephora HOM05D005125 ORTHO05D006777 1.3e-172 610.1 399 72.7
Haze_22773 Corylus avellana HOM05D005125 ORTHO05D006777 2.1e-172 609.4 401 72.3
Lj1g0005535 Lotus japonicus HOM05D005125 ORTHO05D006777 4.8e-172 608.2 421 70.3
Glyma.04G017900 Glycine max HOM05D005125 ORTHO05D006777 1.4e-171 606.7 403 73.4
PGR083G1107 Punica granatum HOM05D005125 ORTHO05D006777 4.0e-171 605.1 431 69.4
RcHm_v2.0_Chr6g0304271 Rosa chinensis HOM05D005125 ORTHO05D006777 4.0e-171 605.1 400 72.2
Hma1.2p1_0507F.1_g168460 Hydrangea macrophylla HOM05D005125 ORTHO05D006777 5.3e-171 604.7 424 70.0
Medtr3g115290 Medicago truncatula HOM05D005125 ORTHO05D006777 5.3e-171 604.7 426 70.2
Eucgr.L00923 Eucalyptus grandis HOM05D005125 ORTHO05D006777 2.6e-170 602.4 413 70.2
Lalb_Chr23g0265791 Lupinus albus HOM05D005125 ORTHO05D006777 3.4e-170 602.1 398 72.9
Dinv31939 Davidia involucrata HOM05D005125 ORTHO05D006777 5.8e-170 601.3 399 72.7
ClCG08G009440 Citrullus lanatus HOM05D005125 ORTHO05D006777 9.9e-170 600.5 409 70.7
Migut.C00961 Erythranthe guttata HOM05D005125 ORTHO05D006777 1.7e-169 599.7 387 72.4
EL10Ac1g01960 Beta vulgaris HOM05D005125 ORTHO05D006777 8.4e-169 597.4 398 71.4
CANSAT25G1708 Cannabis sativa HOM05D005125 ORTHO05D006777 1.4e-168 596.7 401 71.8
CSS0022218 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 3.2e-168 595.5 386 73.1
TPR.G38202 Trifolium pratense HOM05D005125 ORTHO05D006777 4.2e-168 595.1 393 71.5
Solyc04g082340.3 Solanum lycopersicum HOM05D005125 ORTHO05D006777 7.1e-168 594.3 427 67.0
Sopen04g035960 Solanum pennellii HOM05D005125 ORTHO05D006777 1.6e-167 593.2 427 67.0
Duzib041G0467 Durio zibethinus HOM05D005125 ORTHO05D006777 2.7e-167 592.4 422 69.4
Actinidia37922 Actinidia chinensis HOM05D005125 ORTHO05D006777 7.9e-167 590.9 392 71.4
CsaV3_6G031580 Cucumis sativus L. HOM05D005125 ORTHO05D006777 5.1e-166 588.2 411 68.6
arahy.Tifrunner.gnm1.ann1.1X7ZBM Arachis hypogaea HOM05D005125 ORTHO05D006777 1.5e-165 586.6 423 68.8
Peaxi162Scf00893g00037 Petunia axillaris HOM05D005125 ORTHO05D006777 1.9e-165 586.3 414 69.1
Lj4A11T69 Lonicera japonica HOM05D005125 ORTHO05D006777 7.4e-165 584.3 391 71.1
PGSC0003DMG400009979 Solanum tuberosum HOM05D005125 ORTHO05D006777 7.4e-165 584.3 399 70.2
arahy.Tifrunner.gnm1.ann1.VXG7Z6 Arachis hypogaea HOM05D005125 ORTHO05D006777 1.6e-164 583.2 423 68.6
TAR625G0173 Trochodendron aralioides HOM05D005125 ORTHO05D006777 1.1e-163 580.5 399 70.7
Lsat_1_v5_gn_2_5181 Lactuca sativa HOM05D005125 ORTHO05D006777 2.4e-163 579.3 392 69.6
Phvul.009G010800 Phaseolus vulgaris HOM05D005125 ORTHO05D006777 3.1e-163 578.9 410 68.3
AUR62036871 Chenopodium quinoa HOM05D005125 ORTHO05D006777 6.9e-163 577.8 385 70.9
SalBow7G1095 Salvia bowleyana HOM05D005125 ORTHO05D006777 1.2e-162 577.0 406 67.2
Nitab4.5_0000588g0110 Nicotiana tabacum HOM05D005125 ORTHO05D006777 3.4e-162 575.5 426 66.4
Rhsim06G0007400 Rhododendron simsii HOM05D005125 ORTHO05D006777 9.9e-162 573.9 391 69.1
Aqoxy6G01728 Aquilegia oxysepala HOM05D005125 ORTHO05D006777 1.3e-161 573.5 391 70.1
Ah.00g000800 Amaranthus hybridus HOM05D005125 ORTHO05D006777 4.9e-161 571.6 412 67.0
ECA238G0848 Erigeron canadensis HOM05D005125 ORTHO05D006777 3.2e-160 568.9 379 70.4
PSO541G3228 Papaver somniferum HOM05D005125 ORTHO05D006777 5.5e-160 568.2 402 69.2
PSO675G8084 Papaver somniferum HOM05D005125 ORTHO05D006777 5.5e-160 568.2 402 69.2
EL10Ac7g16836 Beta vulgaris HOM05D005125 ORTHO05D006777 9.3e-160 567.4 420 66.2
HanXRQChr06g0183991 Helianthus annuus HOM05D005125 ORTHO05D006777 1.2e-159 567.0 393 67.7
SGA_v2.0_scaffold108G30863 Striga asiatica HOM05D005125 ORTHO05D006777 1.2e-159 567.0 423 66.4
Sed0024407 Sechium edule HOM05D005125 ORTHO05D006777 3.5e-159 565.5 398 68.6
CAN.G311.115 Capsicum annuum HOM05D005125 ORTHO05D006777 6.0e-159 564.7 380 71.1
MD12G1003300 Malus domestica HOM05D005125 ORTHO05D006777 6.0e-159 564.7 444 63.3
vmacro21811 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 5.3e-155 551.6 468 60.3
Lsat_1_v5_gn_8_26201 Lactuca sativa HOM05D005125 ORTHO05D006777 6.9e-155 551.2 397 64.7
Rhsim07G0254900 Rhododendron simsii HOM05D005125 ORTHO05D006777 3.4e-154 548.9 387 68.2
Actinidia28601 Actinidia chinensis HOM05D005125 ORTHO05D006777 4.9e-153 545.0 408 64.7
Ca_15458_v3 Cicer arietinum L. HOM05D005125 ORTHO05D006777 7.1e-152 541.2 338 75.4
Hund05112 Selenicereus undatus HOM05D005125 ORTHO05D006777 1.2e-146 523.9 367 68.4
Nn5g30942 Nelumbo nucifera HOM05D005125 ORTHO05D006777 1.5e-146 523.5 371 67.1
unitig_747.g21516 Utricularia gibba HOM05D005125 ORTHO05D006777 1.3e-145 520.4 398 62.3
vmacro04403 Vaccinium macrocarpon HOM05D005125 ORTHO05D006777 1.1e-144 517.3 408 62.5
VMungo1309G1587 Vigna mungo HOM05D005125 ORTHO05D006777 1.2e-143 513.8 378 66.4
Eucgr.E03516 Eucalyptus grandis HOM05D005125 ORTHO05D006777 2.3e-142 509.6 420 61.9
MBI08_g41521_MAGBIO Magnolia biondii HOM05D005125 ORTHO05D006777 6.9e-139 498.0 400 60.0
DCAR_016769 Daucus carota HOM05D005125 ORTHO05D006777 1.2e-138 497.3 375 63.2
MELO3C026539.2 Cucumis melo HOM05D005125 ORTHO05D006777 1.4e-134 483.8 342 67.8
HPP92_007117 Vanilla planifolia HOM05D005125 ORTHO05D006777 8.8e-134 481.1 407 58.2
Os02g0119300 Oryza sativa ssp. japonica HOM05D005125 ORTHO05D006777 8.2e-132 474.6 391 58.6
Gorai.009G188100 Gossypium raimondii HOM05D005125 ORTHO05D006777 1.4e-131 473.8 322 67.7
Gohir.D05G182800 Gossypium hirsutum HOM05D005125 ORTHO05D006777 1.2e-130 470.7 322 67.1
Zm00001eb209310 Zea mays HOM05D005125 ORTHO05D006777 2.0e-130 469.9 413 57.4
Gohir.A05G179600 Gossypium hirsutum HOM05D005125 ORTHO05D006777 8.5e-129 464.5 322 66.1
SHI07997 Sapria himalayana HOM05D005125 ORTHO05D006777 8.5e-129 464.5 445 54.6
CDE05G1644 Ceratophyllum demersum HOM05D005125 ORTHO05D006777 2.5e-128 463.0 382 58.6
ATR0661G305 Amborella trichopoda HOM05D005125 ORTHO05D006777 2.7e-127 459.5 396 56.6
CSS0019336 Camellia sinensis var. sinensis HOM05D005125 ORTHO05D006777 1.8e-126 456.8 285 74.0
Sc15g0004430 Simmondsia chinensis HOM05D005125 ORTHO05D006777 2.8e-124 449.5 295 71.5
COL.COLO4_06662 Corchorus olitorius HOM05D005125 ORTHO05D006777 6.1e-119 431.8 269 76.2
Psat5g159120 Pisum sativum HOM05D005125 ORTHO05D006777 2.2e-108 396.7 245 75.1
Dinv05534 Davidia involucrata HOM05D005125 ORTHO05D006777 1.4e-107 394.0 259 73.7
AagrBONN_evm.TU.Sc2ySwM_362.2863 Anthoceros agrestis HOM05D005125 ORTHO05D006777 4.7e-103 379.0 314 56.1
Mapoly0045s0063 Marchantia polymorpha HOM05D005125 ORTHO05D006777 1.8e-102 377.1 308 57.1
Pp3c20_16570 Physcomitrium patens HOM05D005125 ORTHO05D006777 4.5e-98 362.5 407 46.4
BcaNung05255 Brassica carinata HOM05D005125 ORTHO05D006777 1.3e-97 360.9 229 82.1
SMO358G0159 Selaginella moellendorffii HOM05D005125 ORTHO05D006777 2.7e-90 336.7 277 58.5
BcaNung05254 Brassica carinata HOM05D005125 ORTHO05D006777 5.6e-88 328.9 174 87.9
ECA238G3411 Erigeron canadensis HOM05D005125 ORTHO05D006777 1.4e-86 324.3 199 72.9
Cre11.g467631 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D006777 1.9e-75 287.3 320 44.1
SGA_v2.0_scaffold195G40773 Striga asiatica HOM05D005125 ORTHO05D006777 5.1e-73 279.3 191 65.4
BolC9t55384H Brassica oleracea HOM05D005125 ORTHO05D006777 7.6e-69 265.4 165 85.5
PRCOL_00006814 Prasinoderma coloniale HOM05D005125 ORTHO05D006777 2.1e-66 257.3 246 50.4
MD00G1076900 Malus domestica HOM05D005125 ORTHO05D006777 7.8e-66 255.4 221 57.9
SEGI_03459 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 6.6e-65 252.3 195 59.5
Oeu056206.2 Olea europaea HOM05D005125 ORTHO05D006777 9.6e-56 221.9 153 69.9
ECA233G3085 Erigeron canadensis HOM05D000006 ORTHO05D000001 1.2e-42 178.3 110 68.2
MCO16G405 Micromonas commoda HOM05D005125 ORTHO05D006777 5.3e-38 162.9 140 51.4
SEGI_37631 Sequoiadendron giganteum HOM05D005125 ORTHO05D006777 5.3e-38 162.9 114 57.0
SGA_v2.0_scaffold83G26467 Striga asiatica HOM05D005125 ORTHO05D006777 2.0e-37 161.0 282 37.9
ECA238G2450 Erigeron canadensis HOM05D000240 ORTHO05D002721 7.4e-32 142.5 176 42.6
Cc00_g07920 Coffea canephora HOM05D005125 ORTHO05D006777 1.4e-30 138.3 156 50.6
Sc15g0004440 Simmondsia chinensis HOM05D005125 ORTHO05D006777 2.6e-29 134.0 118 56.8
PRCOL_00005708 Prasinoderma coloniale HOM05D005125 ORTHO05D034490 3.4e-29 133.7 412 27.2
Cre16.g668950 Chlamydomonas reinhardtii HOM05D005125 ORTHO05D034490 4.3e-24 116.7 296 30.4
Oeu035185.1 Olea europaea HOM05D005125 ORTHO05D006777 1.2e-21 108.6 80 66.2
Lsat_1_v5_gn_1_87521 Lactuca sativa HOM05D005125 ORTHO05D007904 1.1e-19 102.1 63 69.8
Cc10_g14360 Coffea canephora HOM05D005125 ORTHO05D006777 3.1e-14 84.0 58 67.2
TPR.G33884 Trifolium pratense HOM05D005125 ORTHO05D006777 1.0e-12 79.0 51 66.7
C04p25390 Brassica napus HOM05D005125 ORTHO05D041222 1.9e-11 74.7 89 49.4
BolC4t24047H Brassica oleracea HOM05D005125 ORTHO05D041222 1.9e-11 74.7 89 49.4
ECA233G5321 Erigeron canadensis HOM05D000003 ORTHO05D000004 5.2e-09 66.6 54 57.4


User provided reference genes

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