Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0620 Capsella rubella HOM05D004504 ORTHO05D005324 2.1e-175 619.0 338 100.0
AL8G18380 Arabidopsis lyrata HOM05D004504 ORTHO05D005324 9.8e-136 487.3 348 84.2
AT5G42750 Arabidopsis thaliana HOM05D004504 ORTHO05D005324 9.8e-136 487.3 346 83.8
CARHR181660 Cardamine hirsuta HOM05D004504 ORTHO05D005324 4.5e-125 451.8 352 76.7
A02p27570 Brassica napus HOM05D004504 ORTHO05D005324 7.7e-125 451.1 352 76.7
BraA02t07790Z Brassica rapa HOM05D004504 ORTHO05D005324 7.7e-125 451.1 352 76.7
BolC2t10378H Brassica oleracea HOM05D004504 ORTHO05D005324 4.7e-122 441.8 352 75.9
BcaC03g16510 Brassica carinata HOM05D004504 ORTHO05D005324 2.9e-119 432.6 352 75.0
C02p43260 Brassica napus HOM05D004504 ORTHO05D005324 2.9e-119 432.6 352 75.0
BcaB07g30603 Brassica carinata HOM05D004504 ORTHO05D005324 9.2e-118 427.6 351 75.2
Thhalv10003420m.g Eutrema salsugineum HOM05D004504 ORTHO05D005324 1.2e-117 427.2 343 75.5
Sp2g07370 Schrenkiella parvula HOM05D004504 ORTHO05D005324 6.6e-116 421.4 355 73.2
Aa31LG9G12800 Aethionema arabicum HOM05D004504 ORTHO05D005324 2.7e-77 293.1 351 56.7
THA.LOC104806943 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 2.2e-63 246.9 370 53.0
Thecc.08G010300 Theobroma cacao HOM05D004504 ORTHO05D005324 4.8e-50 202.6 336 46.7
Prupe.1G437500 Prunus persica HOM05D004504 ORTHO05D005324 4.1e-49 199.5 337 47.8
Haze_17534 Corylus avellana HOM05D004504 ORTHO05D005324 1.0e-47 194.9 306 46.7
Haze_17537 Corylus avellana HOM05D004504 ORTHO05D005324 1.0e-47 194.9 306 46.7
Cfa018531 Carpinus fangiana HOM05D004504 ORTHO05D005324 1.7e-47 194.1 334 44.0
Duzib093G0589 Durio zibethinus HOM05D004504 ORTHO05D005324 6.5e-47 192.2 337 44.5
RcHm_v2.0_Chr6g0307761 Rosa chinensis HOM05D004504 ORTHO05D005324 6.5e-47 192.2 344 43.6
FvH4_2g34560 Fragaria vesca HOM05D004504 ORTHO05D005324 1.1e-46 191.4 324 46.3
Nitab4.5_0001580g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 1.1e-46 191.4 314 47.5
FAN15G1553 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.9e-46 190.7 325 45.8
CiPaw.15G061000 Carya illinoinensis HOM05D004504 ORTHO05D005324 9.4e-46 188.3 302 48.3
Duzib116G0149 Durio zibethinus HOM05D004504 ORTHO05D005324 2.1e-45 187.2 355 44.8
Ciclev10001740m.g Citrus clementina HOM05D004504 ORTHO05D005324 6.1e-45 185.7 316 44.6
FAN20G0303 Fragaria x ananassa HOM05D004504 ORTHO05D005324 6.1e-45 185.7 326 46.0
Cpa.g.sc49.5 Carica papaya HOM05D004504 ORTHO05D005324 7.9e-45 185.3 326 46.6
FAN27G0025 Fragaria x ananassa HOM05D004504 ORTHO05D005324 1.0e-44 184.9 345 45.2
COL.COLO4_26483 Corchorus olitorius HOM05D004504 ORTHO05D005324 1.4e-44 184.5 325 46.2
MD08G1102600 Malus domestica HOM05D004504 ORTHO05D005324 5.1e-44 182.6 271 48.0
QL02p005285 Quercus lobata HOM05D004504 ORTHO05D005324 5.1e-44 182.6 341 42.8
TWI36G0477 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 8.8e-44 181.8 310 47.4
Gohir.A01G119100 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.1e-43 181.4 312 44.6
Gohir.D05G204900 Gossypium hirsutum HOM05D004504 ORTHO05D005324 1.5e-43 181.0 341 45.2
Manes.05G172300 Manihot esculenta HOM05D004504 ORTHO05D005324 2.6e-43 180.3 334 44.0
MELO3C016744.2 Cucumis melo HOM05D004504 ORTHO05D005324 3.3e-43 179.9 328 46.0
Gohir.A05G201800 Gossypium hirsutum HOM05D004504 ORTHO05D005324 3.3e-43 179.9 340 45.6
Gorai.002G131700 Gossypium raimondii HOM05D004504 ORTHO05D005324 4.4e-43 179.5 310 44.2
Phvul.009G064300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 4.4e-43 179.5 338 45.0
ClCG05G019780 Citrullus lanatus HOM05D004504 ORTHO05D005324 5.7e-43 179.1 325 44.0
Gohir.D01G107300 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.7e-43 179.1 310 44.2
Gorai.009G211200 Gossypium raimondii HOM05D004504 ORTHO05D005324 5.7e-43 179.1 340 45.3
Potri.014G031100 Populus trichocarpa HOM05D004504 ORTHO05D005324 7.4e-43 178.7 329 45.3
TWI36G0121 Tripterygium wilfordii HOM05D004504 ORTHO05D005324 7.4e-43 178.7 307 46.6
Glyma.06G039100 Glycine max HOM05D004504 ORTHO05D005324 9.7e-43 178.3 337 44.8
MSTRG.24329 Avicennia marina HOM05D004504 ORTHO05D005324 1.3e-42 177.9 317 44.8
Cc10_g04260 Coffea canephora HOM05D004504 ORTHO05D005324 1.7e-42 177.6 314 45.2
Hma1.2p1_0718F.1_g208360 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 2.2e-42 177.2 307 43.6
CsaV3_4G034230 Cucumis sativus L. HOM05D004504 ORTHO05D005324 2.8e-42 176.8 328 45.4
MSTRG.22265 Avicennia marina HOM05D004504 ORTHO05D005324 4.8e-42 176.0 338 42.3
Hma1.2p1_0982F.1_g243930 Hydrangea macrophylla HOM05D004504 ORTHO05D005324 1.8e-41 174.1 312 44.6
TAR381G0791 Trochodendron aralioides HOM05D004504 ORTHO05D005324 2.4e-41 173.7 310 44.5
VMungo1309G0174 Vigna mungo HOM05D004504 ORTHO05D005324 2.4e-41 173.7 337 43.0
DCAR_012769 Daucus carota HOM05D004504 ORTHO05D005324 3.1e-41 173.3 348 42.8
Sed0018137 Sechium edule HOM05D004504 ORTHO05D005324 6.9e-41 172.2 340 42.4
TAR625G1455 Trochodendron aralioides HOM05D004504 ORTHO05D005324 1.2e-40 171.4 307 44.3
MD15G1084100 Malus domestica HOM05D004504 ORTHO05D005324 1.5e-40 171.0 270 47.0
CiPaw.16G045400 Carya illinoinensis HOM05D004504 ORTHO05D005324 2.6e-40 170.2 306 44.1
Lj1g0007502 Lotus japonicus HOM05D004504 ORTHO05D005324 5.9e-40 169.1 328 41.5
MBI06_g24649_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 5.9e-40 169.1 307 43.3
Glyma.04G038100 Glycine max HOM05D004504 ORTHO05D005324 1.7e-39 167.5 338 43.2
Lalb_Chr22g0355171 Lupinus albus HOM05D004504 ORTHO05D005324 3.8e-39 166.4 320 44.1
Sed0027328 Sechium edule HOM05D004504 ORTHO05D005324 3.8e-39 166.4 314 41.7
Manes.18G035600 Manihot esculenta HOM05D004504 ORTHO05D005324 5.0e-39 166.0 326 43.6
Sabra14G0022100 Salix brachista HOM05D004504 ORTHO05D005324 6.5e-39 165.6 318 43.4
VMungo0647G0958 Vigna mungo HOM05D004504 ORTHO05D005324 6.5e-39 165.6 324 42.0
ClCG08G015770 Citrullus lanatus HOM05D004504 ORTHO05D005324 8.5e-39 165.2 329 41.0
Oeu029881.1 Olea europaea HOM05D004504 ORTHO05D005324 1.4e-38 164.5 309 43.7
CsaV3_2G027990 Cucumis sativus L. HOM05D004504 ORTHO05D005324 3.2e-38 163.3 317 42.0
Potri.002G127100 Populus trichocarpa HOM05D004504 ORTHO05D005324 3.2e-38 163.3 355 41.4
AUR62022419 Chenopodium quinoa HOM05D004504 ORTHO05D005324 5.5e-38 162.5 352 38.6
Peaxi162Scf00064g00008 Petunia axillaris HOM05D004504 ORTHO05D005324 5.5e-38 162.5 319 39.2
PSO170G6689 Papaver somniferum HOM05D004504 ORTHO05D005324 6.1e-37 159.1 321 42.7
Phvul.001G021300 Phaseolus vulgaris HOM05D004504 ORTHO05D005324 1.4e-36 157.9 326 40.2
Sabra02G0099600 Salix brachista HOM05D004504 ORTHO05D005324 1.8e-36 157.5 304 44.1
Aqoxy5G01252 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 3.9e-36 156.4 327 41.3
Sed0026223 Sechium edule HOM05D004504 ORTHO05D005324 3.9e-36 156.4 342 40.1
Lsat_1_v5_gn_6_114061 Lactuca sativa HOM05D004504 ORTHO05D005324 2.0e-35 154.1 344 39.8
PGSC0003DMG400008020 Solanum tuberosum HOM05D004504 ORTHO05D005324 3.3e-35 153.3 307 43.6
HanXRQChr09g0267891 Helianthus annuus HOM05D004504 ORTHO05D005324 7.4e-35 152.1 355 38.0
arahy.Tifrunner.gnm1.ann1.2LG1YU Arachis hypogaea HOM05D004504 ORTHO05D005324 9.7e-35 151.8 362 36.7
DCAR_019457 Daucus carota HOM05D004504 ORTHO05D005324 1.3e-34 151.4 320 41.6
Medtr3g101560 Medicago truncatula HOM05D004504 ORTHO05D005324 1.3e-34 151.4 333 41.4
PGR083G0364 Punica granatum HOM05D004504 ORTHO05D005324 6.3e-34 149.1 347 41.5
Sopen04g032720 Solanum pennellii HOM05D004504 ORTHO05D005324 6.3e-34 149.1 305 42.0
Eucgr.F00237 Eucalyptus grandis HOM05D004504 ORTHO05D005324 1.8e-33 147.5 266 44.0
Glyma.14G082300 Glycine max HOM05D004504 ORTHO05D005324 2.4e-33 147.1 351 38.5
Solyc04g079110.1 Solanum lycopersicum HOM05D004504 ORTHO05D005324 3.1e-33 146.7 303 41.3
EL10Ac1g01723 Beta vulgaris HOM05D004504 ORTHO05D005324 4.1e-33 146.4 371 39.4
Glyma.17G243000 Glycine max HOM05D004504 ORTHO05D005324 4.1e-33 146.4 333 39.3
PSO210G2137 Papaver somniferum HOM05D004504 ORTHO05D005324 4.1e-33 146.4 322 41.0
MSTRG.1340 Avicennia marina HOM05D004504 ORTHO05D005324 9.1e-33 145.2 328 41.2
TPR.G28115 Trifolium pratense HOM05D004504 ORTHO05D005324 9.1e-33 145.2 264 45.5
Medtr1g019750 Medicago truncatula HOM05D004504 ORTHO05D005324 1.6e-32 144.4 321 38.6
MELO3C010878.2 Cucumis melo HOM05D004504 ORTHO05D005324 7.7e-32 142.1 265 41.9
Migut.N02706 Erythranthe guttata HOM05D004504 ORTHO05D005324 1.7e-31 141.0 302 39.1
Lalb_Chr24g0399251 Lupinus albus HOM05D004504 ORTHO05D005324 1.7e-31 141.0 288 39.9
Actinidia23268 Actinidia chinensis HOM05D001164 ORTHO05D001031 2.9e-31 140.2 305 39.7
AUR62042173 Chenopodium quinoa HOM05D004504 ORTHO05D005324 3.2e-30 136.7 300 38.7
Atru.chr13.656 Acer truncatum HOM05D004504 ORTHO05D005324 1.2e-29 134.8 270 41.5
Lalb_Chr23g0267021 Lupinus albus HOM05D004504 ORTHO05D005324 1.2e-29 134.8 317 38.5
SalBow7G1688 Salvia bowleyana HOM05D004504 ORTHO05D005324 2.1e-29 134.0 317 38.5
Lsat_1_v5_gn_4_125561 Lactuca sativa HOM05D004504 ORTHO05D005324 6.1e-29 132.5 372 36.0
MBI02_g02958_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 6.1e-29 132.5 333 37.5
MBI02_g17324_MAGBIO Magnolia biondii HOM05D004504 ORTHO05D005324 6.1e-29 132.5 333 37.5
Duzib041G0178 Durio zibethinus HOM05D004504 ORTHO05D005324 8.0e-29 132.1 332 37.0
HanXRQChr16g0507531 Helianthus annuus HOM05D004504 ORTHO05D005324 8.0e-29 132.1 353 38.5
SHI08291 Sapria himalayana HOM05D004504 ORTHO05D005324 8.0e-29 132.1 312 39.1
Sopen12g030760 Solanum pennellii HOM05D004504 ORTHO05D005324 8.0e-29 132.1 295 37.6
CAN.G1422.9 Capsicum annuum HOM05D000541 ORTHO05D000137 3.0e-28 130.2 381 35.7
Peaxi162Scf00252g00123 Petunia axillaris HOM05D004504 ORTHO05D005324 4.0e-28 129.8 326 35.3
Gohir.A06G017400 Gossypium hirsutum HOM05D004504 ORTHO05D005324 5.2e-28 129.4 307 39.7
HPP92_016728 Vanilla planifolia HOM05D004504 ORTHO05D005324 8.8e-28 128.6 335 39.1
Gohir.D06G015500 Gossypium hirsutum HOM05D004504 ORTHO05D005324 2.6e-27 127.1 253 41.5
Sed0004281 Sechium edule HOM05D004504 ORTHO05D005324 2.6e-27 127.1 266 40.2
Aqoxy6G01353 Aquilegia oxysepala HOM05D004504 ORTHO05D005324 4.4e-27 126.3 319 36.7
PGSC0003DMG400015442 Solanum tuberosum HOM05D004504 ORTHO05D005324 4.4e-27 126.3 302 38.4
PSO541G3526 Papaver somniferum HOM05D004504 ORTHO05D005324 2.2e-26 124.0 304 36.5
TPR.G17544 Trifolium pratense HOM05D004504 ORTHO05D005324 8.2e-26 122.1 328 36.3
Lj5g0012770 Lotus japonicus HOM05D004504 ORTHO05D005324 1.1e-25 121.7 342 38.3
PSO675G2195 Papaver somniferum HOM05D004504 ORTHO05D005324 1.1e-25 121.7 305 37.4
Nn1g04891 Nelumbo nucifera HOM05D004504 ORTHO05D005324 1.8e-25 120.9 208 42.3
THA.LOC104804561 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 3.5e-24 116.7 333 38.4
CAN.G371.30 Capsicum annuum HOM05D004504 ORTHO05D005324 4.5e-24 116.3 315 37.5
PGR031G2315 Punica granatum HOM05D004504 ORTHO05D005324 2.9e-23 113.6 327 33.0
Oeu057287.1 Olea europaea HOM05D004504 ORTHO05D005324 5.0e-23 112.8 218 44.0
CDE02G0300 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 6.5e-23 112.5 330 34.5
Rhsim06G0048600 Rhododendron simsii HOM05D004504 ORTHO05D005324 8.5e-23 112.1 312 37.2
SGA_v2.0_scaffold14G07036 Striga asiatica HOM05D004504 ORTHO05D005324 1.1e-22 111.7 254 39.0
Dinv39324 Davidia involucrata HOM05D004504 ORTHO05D005324 3.2e-22 110.2 181 43.6
Dinv35969 Davidia involucrata HOM05D004504 ORTHO05D005324 7.2e-22 109.0 307 33.6
RcHm_v2.0_Chr6g0307601 Rosa chinensis HOM05D004504 ORTHO05D005324 1.6e-21 107.8 290 35.2
CDE06G1443 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 6.1e-21 105.9 305 34.8
Actinidia22620 Actinidia chinensis HOM05D001164 ORTHO05D001031 6.8e-20 102.4 238 38.2
CDE02G3707 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.5e-19 101.3 328 32.6
Gorai.010G018300 Gossypium raimondii HOM05D004504 ORTHO05D005324 5.7e-19 99.4 253 36.8
Lj4P774T14 Lonicera japonica HOM05D004504 ORTHO05D005324 1.3e-18 98.2 211 39.3
GSVIVG01009517001 Vitis vinifera HOM05D004504 ORTHO05D005324 2.2e-18 97.4 150 48.7
unitig_899.g15623 Utricularia gibba HOM05D004504 ORTHO05D005324 1.1e-17 95.1 319 32.0
Sc15g0006190 Simmondsia chinensis HOM05D004504 ORTHO05D005324 1.8e-17 94.4 251 36.7
Sc15g0006270 Simmondsia chinensis HOM05D004504 ORTHO05D005324 1.8e-17 94.4 251 36.7
Oeu044838.1 Olea europaea HOM05D004504 ORTHO05D005324 9.1e-17 92.0 187 42.8
Psat6g012120 Pisum sativum HOM05D004504 ORTHO05D005324 9.1e-17 92.0 315 31.7
Nitab4.5_0007986g0010 Nicotiana tabacum HOM05D004504 ORTHO05D005324 4.5e-16 89.7 253 39.5
unitig_26.g10024 Utricularia gibba HOM05D004504 ORTHO05D005324 4.5e-16 89.7 297 34.0
Lj4P54T34 Lonicera japonica HOM05D004504 ORTHO05D005324 6.5e-15 85.9 114 48.2
Eucgr.F02356 Eucalyptus grandis HOM05D004504 ORTHO05D005324 1.6e-13 81.3 316 34.2
CDE09G0998 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 4.4e-11 73.2 323 30.7
SalBow2G2132 Salvia bowleyana HOM05D004504 ORTHO05D005324 7.5e-11 72.4 129 43.4
Zm00001eb315000 Zea mays HOM05D004504 ORTHO05D005324 2.8e-10 70.5 230 30.9
ATR0100G018 Amborella trichopoda HOM05D004504 ORTHO05D005324 6.3e-10 69.3 147 36.1
SGA_v2.0_scaffold208G41968 Striga asiatica HOM05D004504 ORTHO05D005324 4.1e-09 66.6 319 29.2
Os09g0459500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 9.2e-09 65.5 82 47.6
ECA234G3153 Erigeron canadensis HOM05D006303 ORTHO05D008007 1.0e-07 62.0 363 27.0
CDE09G1057 Ceratophyllum demersum HOM05D004504 ORTHO05D005324 1.3e-07 61.6 100 48.0
MELO3C014489.2 Cucumis melo HOM05D006303 ORTHO05D008007 3.8e-07 60.1 293 26.6
ClCG06G006020 Citrullus lanatus HOM05D006303 ORTHO05D008007 5.0e-07 59.7 286 26.6
unitig_749.g13680 Utricularia gibba HOM05D004504 ORTHO05D005324 5.0e-07 59.7 297 27.9
CsaV3_3G013490 Cucumis sativus L. HOM05D006303 ORTHO05D008007 1.1e-06 58.5 321 29.3
Oeu011558.1 Olea europaea HOM05D004504 ORTHO05D005324 1.1e-06 58.5 81 50.6
Zm00001eb038100 Zea mays HOM05D004504 ORTHO05D005324 1.1e-06 58.5 127 40.2
FAN07G1279 Fragaria x ananassa HOM05D006303 ORTHO05D008007 1.5e-06 58.2 373 27.6
Sed0009344 Sechium edule HOM05D006303 ORTHO05D008007 1.9e-06 57.8 281 24.9
Oeu011539.1 Olea europaea HOM05D004504 ORTHO05D005324 2.5e-06 57.4 83 47.0
Os08g0474500 Oryza sativa ssp. japonica HOM05D004504 ORTHO05D005324 2.5e-06 57.4 60 56.7
CsaV3_6G038260 Cucumis sativus L. HOM05D006303 ORTHO05D008007 3.3e-06 57.0 295 25.1
Duzib052G1015 Durio zibethinus HOM05D006303 ORTHO05D008007 5.6e-06 56.2 370 24.9
Manes.15G026800 Manihot esculenta HOM05D006303 ORTHO05D008007 5.6e-06 56.2 348 25.3
HanXRQChr15g0466041 Helianthus annuus HOM05D006303 ORTHO05D008007 7.3e-06 55.8 345 28.4
THA.LOC109116829 Tarenaya hassleriana HOM05D004504 ORTHO05D005324 7.3e-06 55.8 137 38.7
Manes.03G181100 Manihot esculenta HOM05D006303 ORTHO05D008007 9.5e-06 55.5 348 27.0
Oeu004490.1 Olea europaea HOM05D006303 ORTHO05D008007 9.5e-06 55.5 348 25.0
Thecc.04G227500 Theobroma cacao HOM05D006303 ORTHO05D008007 9.5e-06 55.5 302 26.2


User provided reference genes

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