Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0617 Capsella rubella HOM05D007221 ORTHO05D009204 4.3e-119 431.4 228 100.0
AT5G42765 Arabidopsis thaliana HOM05D007221 ORTHO05D009204 4.0e-101 371.7 232 84.9
AL8G18350 Arabidopsis lyrata HOM05D007221 ORTHO05D009204 5.8e-100 367.9 231 85.7
CARHR181710 Cardamine hirsuta HOM05D007221 ORTHO05D009204 2.4e-98 362.5 231 85.7
Sp2g07400 Schrenkiella parvula HOM05D007221 ORTHO05D009204 1.1e-87 327.0 230 79.6
BcaC04g21975 Brassica carinata HOM05D007221 ORTHO05D009204 2.8e-86 322.4 229 78.2
Thhalv10003376m.g Eutrema salsugineum HOM05D007221 ORTHO05D009204 1.1e-85 320.5 231 76.6
BolC9t55425H Brassica oleracea HOM05D007221 ORTHO05D009204 2.4e-85 319.3 229 78.2
BcaB07g31048 Brassica carinata HOM05D007221 ORTHO05D009204 4.0e-85 318.5 231 76.6
BraA09t37604Z Brassica rapa HOM05D007221 ORTHO05D009204 5.3e-85 318.2 228 78.1
A09p19950 Brassica napus HOM05D007221 ORTHO05D009204 2.6e-84 315.8 228 77.2
C09p25270 Brassica napus HOM05D007221 ORTHO05D009204 1.0e-83 313.9 229 77.3
Aa31LG9G12820 Aethionema arabicum HOM05D007221 ORTHO05D009204 6.5e-83 311.2 229 74.2
THA.LOC104812558 Tarenaya hassleriana HOM05D007221 ORTHO05D009204 6.3e-78 294.7 236 69.9
CANSAT25G0501 Cannabis sativa HOM05D007221 ORTHO05D009204 5.7e-63 245.0 200 65.0
Sabra14G0145300 Salix brachista HOM05D007221 ORTHO05D009204 1.2e-60 237.3 224 58.5
QL02p008631 Quercus lobata HOM05D007221 ORTHO05D009204 5.9e-60 235.0 212 59.9
Potri.014G196800 Populus trichocarpa HOM05D007221 ORTHO05D009204 1.7e-59 233.4 222 58.1
Eucgr.F01893 Eucalyptus grandis HOM05D007221 ORTHO05D009204 1.1e-58 230.7 194 62.9
CiPaw.15G078400 Carya illinoinensis HOM05D007221 ORTHO05D009204 3.2e-58 229.2 214 58.4
Prupe.1G379100 Prunus persica HOM05D007221 ORTHO05D009204 9.4e-58 227.6 217 56.7
TAR625G0916 Trochodendron aralioides HOM05D007221 ORTHO05D009204 9.4e-58 227.6 202 58.4
Ciclev10002305m.g Citrus clementina HOM05D007221 ORTHO05D009204 2.1e-57 226.5 195 61.0
arahy.Tifrunner.gnm1.ann1.50YYNM Arachis hypogaea HOM05D007221 ORTHO05D009204 2.7e-57 226.1 202 58.9
CAN.G1226.17 Capsicum annuum HOM05D007221 ORTHO05D009204 2.7e-57 226.1 214 57.5
Rhsim07G0239500 Rhododendron simsii HOM05D007221 ORTHO05D009204 2.7e-57 226.1 230 55.7
arahy.Tifrunner.gnm1.ann1.647QNX Arachis hypogaea HOM05D007221 ORTHO05D009204 4.7e-57 225.3 202 58.9
Hma1.2p1_0203F.1_g086350 Hydrangea macrophylla HOM05D007221 ORTHO05D009204 4.7e-57 225.3 192 60.4
PGR031G1076 Punica granatum HOM05D007221 ORTHO05D009204 6.1e-57 224.9 220 56.8
Aqoxy6G01112 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 1.4e-56 223.8 223 55.2
Ca_15515_v3 Cicer arietinum L. HOM05D007221 ORTHO05D009204 2.3e-56 223.0 203 58.6
Lj4A39T64 Lonicera japonica HOM05D007221 ORTHO05D009204 2.3e-56 223.0 230 54.3
HanXRQChr16g0508501 Helianthus annuus HOM05D007221 ORTHO05D009204 3.0e-56 222.6 230 53.5
COL.COLO4_26312 Corchorus olitorius HOM05D007221 ORTHO05D009204 5.2e-56 221.9 231 55.0
MELO3C010945.2 Cucumis melo HOM05D007221 ORTHO05D009204 5.2e-56 221.9 197 58.9
TPR.G12470 Trifolium pratense HOM05D007221 ORTHO05D009204 6.7e-56 221.5 233 52.8
Medtr3g111850 Medicago truncatula HOM05D007221 ORTHO05D009204 8.8e-56 221.1 221 55.2
MD08G1031600 Malus domestica HOM05D007221 ORTHO05D009204 1.1e-55 220.7 214 56.1
PSO675G7833 Papaver somniferum HOM05D007221 ORTHO05D009204 1.1e-55 220.7 226 54.4
VMungo1309G3139 Vigna mungo HOM05D007221 ORTHO05D009204 2.6e-55 219.5 198 58.1
Lj1g0002842 Lotus japonicus HOM05D007221 ORTHO05D009204 4.4e-55 218.8 182 61.5
Nitab4.5_0006280g0040 Nicotiana tabacum HOM05D007221 ORTHO05D009204 5.7e-55 218.4 212 55.2
GSVIVG01009712001 Vitis vinifera HOM05D007221 ORTHO05D009204 5.7e-55 218.4 193 60.1
CsaV3_2G028730 Cucumis sativus L. HOM05D007221 ORTHO05D009204 7.4e-55 218.0 199 57.3
Gohir.D01G104000 Gossypium hirsutum HOM05D007221 ORTHO05D009204 9.7e-55 217.6 220 54.1
Gohir.A01G115700 Gossypium hirsutum HOM05D007221 ORTHO05D009204 1.3e-54 217.2 220 55.0
MD15G1027300 Malus domestica HOM05D007221 ORTHO05D009204 1.3e-54 217.2 235 51.5
Nitab4.5_0010510g0010 Nicotiana tabacum HOM05D007221 ORTHO05D009204 1.3e-54 217.2 212 54.7
Psat5g017120 Pisum sativum HOM05D007221 ORTHO05D009204 1.3e-54 217.2 229 51.5
Thecc.08G027100 Theobroma cacao HOM05D007221 ORTHO05D009204 1.7e-54 216.9 194 60.3
Lalb_Chr11g0062321 Lupinus albus HOM05D007221 ORTHO05D009204 2.2e-54 216.5 224 52.7
Phvul.009G057900 Phaseolus vulgaris HOM05D007221 ORTHO05D009204 3.7e-54 215.7 217 53.0
Sopen04g033980 Solanum pennellii HOM05D007221 ORTHO05D009204 4.8e-54 215.3 233 51.5
Solyc04g080390.4 Solanum lycopersicum HOM05D007221 ORTHO05D009204 6.3e-54 214.9 233 51.5
Sed0005529 Sechium edule HOM05D007221 ORTHO05D009204 1.1e-53 214.2 197 58.9
Sc02g0006170 Simmondsia chinensis HOM05D007221 ORTHO05D009204 1.8e-53 213.4 203 54.2
Cc10_g02840 Coffea canephora HOM05D007221 ORTHO05D009204 3.1e-53 212.6 222 54.1
ECA232G4972 Erigeron canadensis HOM05D007221 ORTHO05D009204 3.1e-53 212.6 189 58.7
RcHm_v2.0_Chr6g0301081 Rosa chinensis HOM05D007221 ORTHO05D009204 3.1e-53 212.6 215 55.3
PGSC0003DMG400003731 Solanum tuberosum HOM05D007221 ORTHO05D009204 3.1e-53 212.6 213 54.5
FvH4_2g39780 Fragaria vesca HOM05D007221 ORTHO05D009204 4.1e-53 212.2 209 56.5
Gorai.002G127900 Gossypium raimondii HOM05D007221 ORTHO05D009204 5.3e-53 211.8 229 52.4
Dinv36085 Davidia involucrata HOM05D007221 ORTHO05D009204 1.2e-52 210.7 198 59.1
Glyma.04G031900 Glycine max HOM05D007221 ORTHO05D009204 1.2e-52 210.7 231 51.9
Migut.C00733 Erythranthe guttata HOM05D007221 ORTHO05D009204 2.0e-52 209.9 224 52.2
SGA_v2.0_scaffold111G31495 Striga asiatica HOM05D007221 ORTHO05D009204 5.9e-52 208.4 222 50.9
Actinidia38006 Actinidia chinensis HOM05D007221 ORTHO05D009204 2.2e-51 206.5 225 52.4
AUR62039548 Chenopodium quinoa HOM05D007221 ORTHO05D009204 5.5e-50 201.8 222 53.6
AUR62035445 Chenopodium quinoa HOM05D007221 ORTHO05D009204 7.2e-50 201.4 220 53.2
Peaxi162Scf00417g01337 Petunia axillaris HOM05D007221 ORTHO05D009204 1.6e-49 200.3 163 60.1
ClCG08G015050 Citrullus lanatus HOM05D007221 ORTHO05D009204 2.1e-49 199.9 198 55.1
Lsat_1_v5_gn_4_119280 Lactuca sativa HOM05D007221 ORTHO05D009204 1.0e-48 197.6 182 57.1
Haze_17964 Corylus avellana HOM05D007221 ORTHO05D009204 5.2e-48 195.3 177 60.5
MBI16_g31006_MAGBIO Magnolia biondii HOM05D007221 ORTHO05D009204 8.8e-48 194.5 211 51.2
Manes.05G159500 Manihot esculenta HOM05D007221 ORTHO05D009204 9.8e-47 191.0 195 55.4
Nn1g04985 Nelumbo nucifera HOM05D007221 ORTHO05D009204 1.3e-46 190.7 196 53.1
Atru.chr13.477 Acer truncatum HOM05D007221 ORTHO05D009204 1.7e-46 190.3 169 60.9
CSS0008817 Camellia sinensis var. sinensis HOM05D007221 ORTHO05D009204 4.8e-46 188.7 163 61.3
vmacro04529 Vaccinium macrocarpon HOM05D007221 ORTHO05D009204 4.1e-45 185.7 284 44.4
Oeu063754.1 Olea europaea HOM05D007221 ORTHO05D009204 1.6e-44 183.7 175 56.0
Os03g0774400 Oryza sativa ssp. japonica HOM05D007221 ORTHO05D009204 7.7e-44 181.4 211 49.8
SalBow7G4300 Salvia bowleyana HOM05D007221 ORTHO05D009204 1.3e-43 180.6 200 49.5
EL10Ac1g01796 Beta vulgaris HOM05D007221 ORTHO05D009204 6.5e-43 178.3 218 48.2
HPP92_018787 Vanilla planifolia HOM05D007221 ORTHO05D009204 2.5e-42 176.4 184 52.2
HPP92_018805 Vanilla planifolia HOM05D007221 ORTHO05D009204 4.2e-42 175.6 184 51.6
Hund26574 Selenicereus undatus HOM05D007221 ORTHO05D009204 1.0e-40 171.0 175 56.6
Zm00001eb059140 Zea mays HOM05D007221 ORTHO05D009204 1.4e-40 170.6 233 45.5
PSO541G5695 Papaver somniferum HOM05D007221 ORTHO05D009204 7.5e-39 164.9 178 53.4
Pp3c15_4620 Physcomitrium patens HOM05D007221 ORTHO05D009204 5.4e-37 158.7 173 48.6
Mapoly0024s0117 Marchantia polymorpha HOM05D007221 ORTHO05D009204 7.7e-36 154.8 192 46.9
AagrBONN_evm.TU.Sc2ySwM_368.2172 Anthoceros agrestis HOM05D007221 ORTHO05D009204 2.5e-34 149.8 171 46.8
Glyma.06G032000 Glycine max HOM05D007221 ORTHO05D009204 2.5e-34 149.8 126 57.1
SMO356G0611 Selaginella moellendorffii HOM05D007221 ORTHO05D009204 6.1e-33 145.2 185 44.9
FAN27G1052 Fragaria x ananassa HOM05D007221 ORTHO05D009204 1.0e-32 144.4 182 46.7
FAN20G2979 Fragaria x ananassa HOM05D007221 ORTHO05D009204 2.0e-31 140.2 209 43.5
Ah.05g167430 Amaranthus hybridus HOM05D007221 ORTHO05D009204 4.6e-28 129.0 137 51.8
HPP92_018706 Vanilla planifolia HOM05D007221 ORTHO05D009204 2.9e-27 126.3 133 51.1
unitig_26.g9834 Utricularia gibba HOM05D007221 ORTHO05D009204 1.8e-24 117.1 103 56.3
FAN15G0707 Fragaria x ananassa HOM05D007221 ORTHO05D009204 6.4e-22 108.6 89 60.7
SEGI_36647 Sequoiadendron giganteum HOM05D007221 ORTHO05D009204 2.4e-21 106.7 148 41.9
Duzib093G2110 Durio zibethinus HOM05D007221 ORTHO05D009204 3.9e-19 99.4 80 58.8
CBR_g36819 Chara braunii HOM05D007221 ORTHO05D009204 6.6e-19 98.6 200 35.5
RcHm_v2.0_Chr1g0350071 Rosa chinensis HOM05D007221 ORTHO05D009204 1.4e-16 90.9 71 59.2
Manes.18G026801 Manihot esculenta HOM05D007221 ORTHO05D009204 1.8e-16 90.5 127 41.7
Aqoxy71s002 Aquilegia oxysepala HOM05D007221 ORTHO05D009204 3.3e-10 69.7 89 49.4


User provided reference genes

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