Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0544 Capsella rubella HOM05D006087 ORTHO05D007479 6.3e-51 203.8 99 100.0
AT5G43260 Arabidopsis thaliana HOM05D006087 ORTHO05D007479 7.7e-49 196.8 99 99.0
AL8G17230 Arabidopsis lyrata HOM05D006087 ORTHO05D007479 8.5e-48 193.4 99 94.9
Sp2g08050 Schrenkiella parvula HOM05D006087 ORTHO05D007479 8.0e-46 186.8 99 86.9
A06p47950 Brassica napus HOM05D006087 ORTHO05D007479 1.4e-45 186.0 99 86.9
C07p25860 Brassica napus HOM05D006087 ORTHO05D007479 1.4e-45 186.0 99 86.9
BolC7t43103H Brassica oleracea HOM05D006087 ORTHO05D007479 1.4e-45 186.0 99 86.9
BraA06t27665Z Brassica rapa HOM05D006087 ORTHO05D007479 1.4e-45 186.0 99 86.9
BcaB07g31021 Brassica carinata HOM05D006087 ORTHO05D007479 2.6e-44 181.8 99 83.8
BcaC04g21941 Brassica carinata HOM05D006087 ORTHO05D007479 3.4e-44 181.4 99 83.8
C09p25630 Brassica napus HOM05D006087 ORTHO05D007479 3.4e-44 181.4 99 83.8
BolC9t55466H Brassica oleracea HOM05D006087 ORTHO05D007479 3.4e-44 181.4 99 83.8
BraA09t37633Z Brassica rapa HOM05D006087 ORTHO05D007479 4.4e-44 181.0 99 83.8
CARHR180610 Cardamine hirsuta HOM05D006087 ORTHO05D007479 4.4e-44 181.0 99 89.9
A09p20220 Brassica napus HOM05D006087 ORTHO05D007479 7.5e-44 180.3 99 83.8
THA.LOC104812595 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.3e-40 169.5 96 82.3
Aa31LG9G13330 Aethionema arabicum HOM05D006087 ORTHO05D007479 3.2e-39 164.9 99 80.8
Lalb_Chr12g0206161 Lupinus albus HOM05D006087 ORTHO05D007479 7.2e-39 163.7 97 80.4
TWI75G0102 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 7.2e-39 163.7 95 80.0
Atru.chr11.2326 Acer truncatum HOM05D006087 ORTHO05D007479 3.6e-38 161.4 97 78.4
MD13G1119200 Malus domestica HOM05D006087 ORTHO05D007479 4.7e-38 161.0 95 82.1
TAR374G1631 Trochodendron aralioides HOM05D006087 ORTHO05D007479 1.8e-37 159.1 97 76.3
Glyma.18G006400 Glycine max HOM05D006087 ORTHO05D007479 3.0e-37 158.3 97 78.4
Manes.12G011100 Manihot esculenta HOM05D006087 ORTHO05D007479 4.0e-37 157.9 97 79.4
Glyma.11G250700 Glycine max HOM05D006087 ORTHO05D007479 6.8e-37 157.1 97 77.3
Phvul.001G262000 Phaseolus vulgaris HOM05D006087 ORTHO05D007479 6.8e-37 157.1 97 77.3
TWI18G0911 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 6.8e-37 157.1 95 75.8
Eucgr.B03495 Eucalyptus grandis HOM05D006087 ORTHO05D007479 1.2e-36 156.4 97 76.3
Gohir.D12G152800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 1.2e-36 156.4 100 77.0
Gorai.008G165300 Gossypium raimondii HOM05D006087 ORTHO05D007479 1.2e-36 156.4 100 77.0
Ah.03g136140 Amaranthus hybridus HOM05D006087 ORTHO05D007479 1.5e-36 156.0 94 76.6
CANSAT01G2640 Cannabis sativa HOM05D006087 ORTHO05D007479 2.0e-36 155.6 98 76.5
unitig_749.g13305 Utricularia gibba HOM05D006087 ORTHO05D007479 3.4e-36 154.8 98 73.5
MD16G1119600 Malus domestica HOM05D006087 ORTHO05D007479 5.7e-36 154.1 95 75.8
Cfa009371 Carpinus fangiana HOM05D006087 ORTHO05D007479 7.5e-36 153.7 97 77.3
Haze_12421 Corylus avellana HOM05D006087 ORTHO05D007479 7.5e-36 153.7 97 77.3
TWI36G1569 Tripterygium wilfordii HOM05D006087 ORTHO05D007479 7.5e-36 153.7 95 74.7
EL10Ac6g13503 Beta vulgaris HOM05D006087 ORTHO05D007479 9.8e-36 153.3 102 72.5
Oeu036868.1 Olea europaea HOM05D006087 ORTHO05D007479 9.8e-36 153.3 97 74.2
Cc11_g16920 Coffea canephora HOM05D006087 ORTHO05D007479 1.3e-35 152.9 99 73.7
MELO3C011864.2 Cucumis melo HOM05D006087 ORTHO05D007479 1.3e-35 152.9 97 75.3
Lj4g0011842 Lotus japonicus HOM05D006087 ORTHO05D007479 1.7e-35 152.5 97 74.2
Ciclev10033174m.g Citrus clementina HOM05D006087 ORTHO05D007479 2.8e-35 151.8 97 73.2
COL.COLO4_20404 Corchorus olitorius HOM05D006087 ORTHO05D007479 2.8e-35 151.8 94 77.7
PGSC0003DMG400014051 Solanum tuberosum HOM05D006087 ORTHO05D007479 3.7e-35 151.4 97 75.3
TAR622G0081 Trochodendron aralioides HOM05D006087 ORTHO05D007479 3.7e-35 151.4 99 73.7
Psat5g096360 Pisum sativum HOM05D006087 ORTHO05D007479 4.9e-35 151.0 97 76.3
CiPaw.06G102800 Carya illinoinensis HOM05D006087 ORTHO05D007479 8.3e-35 150.2 97 74.2
Duzib248G0070 Durio zibethinus HOM05D006087 ORTHO05D007479 8.3e-35 150.2 97 75.3
Gohir.A12G148826 Gossypium hirsutum HOM05D006087 ORTHO05D007479 8.3e-35 150.2 100 75.0
Thecc.02G208200 Theobroma cacao HOM05D006087 ORTHO05D007479 8.3e-35 150.2 94 77.7
Ah.02g130900 Amaranthus hybridus HOM05D006087 ORTHO05D007479 1.8e-34 149.1 94 72.3
CAN.G163.9 Capsicum annuum HOM05D006087 ORTHO05D007479 1.8e-34 149.1 99 72.7
Medtr3g085300 Medicago truncatula HOM05D006087 ORTHO05D007479 1.8e-34 149.1 97 72.2
Solyc05g015470.1 Solanum lycopersicum HOM05D006087 ORTHO05D007479 1.8e-34 149.1 97 74.2
Sopen05g010780 Solanum pennellii HOM05D006087 ORTHO05D007479 1.8e-34 149.1 97 74.2
Potri.001G056601 Populus trichocarpa HOM05D006087 ORTHO05D007479 3.1e-34 148.3 97 73.2
CiPaw.05G109600 Carya illinoinensis HOM05D006087 ORTHO05D007479 4.1e-34 147.9 97 71.1
CsaV3_5G030260 Cucumis sativus L. HOM05D006087 ORTHO05D007479 4.1e-34 147.9 97 72.2
Sc04g0010140 Simmondsia chinensis HOM05D006087 ORTHO05D007479 5.4e-34 147.5 97 72.2
PSO017G6027 Papaver somniferum HOM05D006087 ORTHO05D007479 9.2e-34 146.7 97 73.2
PSO478G2574 Papaver somniferum HOM05D006087 ORTHO05D007479 9.2e-34 146.7 97 73.2
Duzib251G0251 Durio zibethinus HOM05D006087 ORTHO05D007479 1.2e-33 146.4 97 75.3
QL03p052667 Quercus lobata HOM05D006087 ORTHO05D007479 1.2e-33 146.4 97 72.2
Gohir.D04G182800 Gossypium hirsutum HOM05D006087 ORTHO05D007479 1.6e-33 146.0 97 73.2
Gorai.012G175800 Gossypium raimondii HOM05D006087 ORTHO05D007479 1.6e-33 146.0 97 73.2
Prupe.1G225600 Prunus persica HOM05D006087 ORTHO05D007479 1.6e-33 146.0 95 74.7
Hma1.2p1_0065F.1_g035460 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 3.5e-33 144.8 98 69.4
SGA_v2.0_scaffold9G04680 Striga asiatica HOM05D006087 ORTHO05D007479 3.5e-33 144.8 100 68.0
Gohir.A04G139600 Gossypium hirsutum HOM05D006087 ORTHO05D007479 5.9e-33 144.1 97 73.2
FAN07G1634 Fragaria x ananassa HOM05D006087 ORTHO05D007479 1.7e-32 142.5 95 71.6
FAN17G2012 Fragaria x ananassa HOM05D006087 ORTHO05D007479 1.7e-32 142.5 95 71.6
FAN22G0702 Fragaria x ananassa HOM05D006087 ORTHO05D007479 1.7e-32 142.5 95 71.6
THA.LOC104820522 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 1.7e-32 142.5 96 71.9
Lsat_1_v5_gn_4_3481 Lactuca sativa HOM05D006087 ORTHO05D007479 2.9e-32 141.7 104 65.4
TPR.G17782 Trifolium pratense HOM05D006087 ORTHO05D007479 3.8e-32 141.4 97 70.1
FAN12G1341 Fragaria x ananassa HOM05D006087 ORTHO05D007479 5.0e-32 141.0 95 70.5
FAN12G1854 Fragaria x ananassa HOM05D006087 ORTHO05D007479 5.0e-32 141.0 95 70.5
Ca_16458_v3 Cicer arietinum L. HOM05D006087 ORTHO05D007479 8.6e-32 140.2 97 70.1
Nitab4.5_0001808g0020 Nicotiana tabacum HOM05D006087 ORTHO05D007479 1.1e-31 139.8 97 72.2
RcHm_v2.0_Chr4g0430231 Rosa chinensis HOM05D006087 ORTHO05D007479 1.1e-31 139.8 95 70.5
CDE02G3899 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 1.9e-31 139.0 99 63.6
Oeu004448.1 Olea europaea HOM05D006087 ORTHO05D007479 1.9e-31 139.0 97 68.0
Potri.003G171800 Populus trichocarpa HOM05D006087 ORTHO05D007479 4.3e-31 137.9 97 69.1
Nitab4.5_0000039g0180 Nicotiana tabacum HOM05D006087 ORTHO05D007479 5.6e-31 137.5 97 70.1
Cpa.g.sc43.59 Carica papaya HOM05D006087 ORTHO05D007479 2.1e-30 135.6 96 69.8
ATR0561G204 Amborella trichopoda HOM05D006087 ORTHO05D007479 2.8e-30 135.2 97 67.0
HanXRQChr10g0310621 Helianthus annuus HOM05D006087 ORTHO05D007479 4.7e-30 134.4 104 61.5
Actinidia20712 Actinidia chinensis HOM05D006087 ORTHO05D007479 1.0e-29 133.3 97 63.9
Rhsim12G0025700 Rhododendron simsii HOM05D006087 ORTHO05D007479 1.8e-29 132.5 99 67.7
Duzib268G0474 Durio zibethinus HOM05D006087 ORTHO05D007479 3.0e-29 131.7 94 68.1
Aqoxy5G03370 Aquilegia oxysepala HOM05D006087 ORTHO05D007479 5.2e-29 131.0 94 67.0
Migut.K00735 Erythranthe guttata HOM05D006087 ORTHO05D007479 8.9e-29 130.2 98 64.3
ECA234G0111 Erigeron canadensis HOM05D006087 ORTHO05D007479 2.0e-28 129.0 87 69.0
Lalb_Chr23g0278081 Lupinus albus HOM05D006087 ORTHO05D007479 2.0e-28 129.0 97 66.0
THA.LOC104825505 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 2.0e-28 129.0 100 64.0
AUR62005621 Chenopodium quinoa HOM05D006087 ORTHO05D007479 2.6e-28 128.6 104 59.6
MELO3C010741.2 Cucumis melo HOM05D006087 ORTHO05D007479 3.4e-28 128.3 96 62.5
PGR102G3303 Punica granatum HOM05D006087 ORTHO05D007479 9.8e-28 126.7 99 65.7
AUR62028927 Chenopodium quinoa HOM05D006087 ORTHO05D007479 2.2e-27 125.6 104 58.7
THA.LOC104807129 Tarenaya hassleriana HOM05D006087 ORTHO05D007479 3.7e-27 124.8 100 62.0
arahy.Tifrunner.gnm1.ann1.1Z01XL Arachis hypogaea HOM05D006087 ORTHO05D007479 8.3e-27 123.6 100 64.0
Sed0007875 Sechium edule HOM05D006087 ORTHO05D007479 8.3e-27 123.6 99 56.6
Mapoly0062s0032 Marchantia polymorpha HOM05D006087 ORTHO05D007479 9.2e-26 120.2 93 66.7
ECA233G2512 Erigeron canadensis HOM05D006443 ORTHO05D007797 1.2e-25 119.8 85 64.7
MSTRG.8005 Avicennia marina HOM05D006087 ORTHO05D007479 4.6e-25 117.9 97 59.8
CSS0016505 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 1.0e-24 116.7 85 67.1
CSS0027394 Camellia sinensis var. sinensis HOM05D006087 ORTHO05D007479 1.0e-24 116.7 85 67.1
Migut.E00016 Erythranthe guttata HOM05D006087 ORTHO05D007479 1.7e-24 115.9 95 56.8
Pp3c22_5660 Physcomitrium patens HOM05D006087 ORTHO05D007479 1.7e-24 115.9 101 59.4
MBI11_g44422_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 2.3e-24 115.5 98 61.2
MD05G1114700 Malus domestica HOM05D006087 ORTHO05D007479 3.0e-24 115.2 79 68.4
ClCG08G017160 Citrullus lanatus HOM05D006087 ORTHO05D007479 1.5e-23 112.8 96 56.2
Pp3c18_21810 Physcomitrium patens HOM05D006087 ORTHO05D007479 4.3e-23 111.3 101 56.4
CsaV3_2G025430 Cucumis sativus L. HOM05D006087 ORTHO05D007479 6.2e-22 107.5 79 64.6
Pp3c14_11460 Physcomitrium patens HOM05D006087 ORTHO05D007479 2.3e-21 105.5 99 57.6
Pp3c21_520 Physcomitrium patens HOM05D006087 ORTHO05D007479 6.8e-21 104.0 93 53.8
MBI11_g05327_MAGBIO Magnolia biondii HOM05D006087 ORTHO05D007479 8.9e-21 103.6 70 70.0
HPP92_024307 Vanilla planifolia HOM05D006087 ORTHO05D007479 1.5e-20 102.8 94 59.6
HPP92_024290 Vanilla planifolia HOM05D006087 ORTHO05D007479 2.6e-20 102.1 95 60.0
Pp3c17_7480 Physcomitrium patens HOM05D006087 ORTHO05D007479 2.7e-17 92.0 99 48.5
Hma1.2p1_0349F.1_g132260 Hydrangea macrophylla HOM05D006087 ORTHO05D007479 9.5e-15 83.6 97 50.5
Zm00001eb241730 Zea mays HOM05D006087 ORTHO05D007479 3.6e-14 81.6 95 45.3
Zm00001eb180950 Zea mays HOM05D006087 ORTHO05D007479 4.0e-13 78.2 100 47.0
Os02g0506600 Oryza sativa ssp. japonica HOM05D006087 ORTHO05D007479 3.4e-12 75.1 97 45.4
Cre10.g432100 Chlamydomonas reinhardtii HOM05D006087 ORTHO05D007479 9.2e-10 67.0 85 40.0
MD16G1189100 Malus domestica HOM05D006087 ORTHO05D007479 1.2e-09 66.6 41 73.2
CDE05G3495 Ceratophyllum demersum HOM05D006087 ORTHO05D007479 6.6e-08 60.8 57 54.4
Zm00001eb421040 Zea mays HOM05D006087 ORTHO05D007479 1.1e-07 60.1 101 37.6


User provided reference genes

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