Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0481 Capsella rubella HOM05D006640 ORTHO05D008078 3.8e-108 394.8 196 100.0
AT5G43822 Arabidopsis thaliana HOM05D006640 ORTHO05D008078 8.5e-100 367.1 196 90.8
AL8G16350 Arabidopsis lyrata HOM05D006640 ORTHO05D008078 7.2e-99 364.0 196 90.3
CARHR179670 Cardamine hirsuta HOM05D006640 ORTHO05D008078 7.7e-93 344.0 196 85.7
Thhalv10003275m.g Eutrema salsugineum HOM05D006640 ORTHO05D008078 5.7e-88 327.8 196 82.1
BcaC06g34624 Brassica carinata HOM05D006640 ORTHO05D008078 8.0e-82 307.4 196 77.6
BcaC06g31675 Brassica carinata HOM05D006640 ORTHO05D008078 4.0e-81 305.1 196 77.0
BraA06t27635Z Brassica rapa HOM05D006640 ORTHO05D008078 4.4e-80 301.6 196 76.0
Aa31LG9G12490 Aethionema arabicum HOM05D006640 ORTHO05D008078 5.8e-80 301.2 196 73.5
Sp2g08620 Schrenkiella parvula HOM05D006218 ORTHO05D007338 4.7e-74 281.6 193 72.5
THA.LOC104820569 Tarenaya hassleriana HOM05D006640 ORTHO05D008078 7.1e-62 241.1 197 62.4
CSS0000785 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.7e-60 236.5 197 58.9
CiPaw.07G136100 Carya illinoinensis HOM05D006640 ORTHO05D008078 1.5e-59 233.4 197 57.9
GSVIVG01013394001 Vitis vinifera HOM05D006640 ORTHO05D008078 1.5e-59 233.4 197 58.9
Haze_19181 Corylus avellana HOM05D006640 ORTHO05D008078 8.9e-57 224.2 197 55.3
Eucgr.F01788 Eucalyptus grandis HOM05D006640 ORTHO05D008078 8.9e-57 224.2 197 56.3
CAN.G1138.9 Capsicum annuum HOM05D006640 ORTHO05D008078 3.4e-56 222.2 198 57.6
QL02p015123 Quercus lobata HOM05D006640 ORTHO05D008078 3.4e-56 222.2 197 54.8
Manes.13G069100 Manihot esculenta HOM05D006640 ORTHO05D008078 4.4e-56 221.9 197 57.4
Atru.chr3.582 Acer truncatum HOM05D006640 ORTHO05D008078 1.3e-55 220.3 197 57.4
MD15G1440200 Malus domestica HOM05D006640 ORTHO05D008078 3.8e-55 218.8 198 57.1
Potri.005G253200 Populus trichocarpa HOM05D006640 ORTHO05D008078 4.2e-54 215.3 199 54.3
Ciclev10002549m.g Citrus clementina HOM05D006640 ORTHO05D008078 7.1e-54 214.5 197 56.3
Thecc.03G029100 Theobroma cacao HOM05D006640 ORTHO05D008078 9.2e-54 214.2 197 55.8
Sopen04g036190 Solanum pennellii HOM05D006640 ORTHO05D008078 1.2e-53 213.8 198 55.1
Prupe.5G009200 Prunus persica HOM05D006640 ORTHO05D008078 1.6e-53 213.4 198 55.6
vmacro05542 Vaccinium macrocarpon HOM05D006640 ORTHO05D008078 1.6e-53 213.4 184 58.2
Gorai.006G062900 Gossypium raimondii HOM05D006640 ORTHO05D008078 2.7e-53 212.6 203 54.7
TAR625G0363 Trochodendron aralioides HOM05D006640 ORTHO05D008078 3.5e-53 212.2 197 53.8
FAN18G3620 Fragaria x ananassa HOM05D006640 ORTHO05D008078 6.0e-53 211.5 198 55.6
MSTRG.990 Avicennia marina HOM05D006640 ORTHO05D008078 7.8e-53 211.1 200 54.5
FvH4_5g25620 Fragaria vesca HOM05D006640 ORTHO05D008078 1.0e-52 210.7 198 55.6
FAN04G1358 Fragaria x ananassa HOM05D006640 ORTHO05D008078 1.0e-52 210.7 198 55.6
Migut.E01492 Erythranthe guttata HOM05D006640 ORTHO05D008078 1.7e-52 209.9 200 53.0
Solyc04g082560.4 Solanum lycopersicum HOM05D001842 ORTHO05D001849 3.9e-52 208.8 198 54.0
Solyc08g069130.1 Solanum lycopersicum HOM05D006640 ORTHO05D008078 3.9e-52 208.8 198 54.0
COL.COLO4_07395 Corchorus olitorius HOM05D006640 ORTHO05D008078 6.6e-52 208.0 196 55.1
Lalb_Chr01g0007731 Lupinus albus HOM05D006640 ORTHO05D008078 6.6e-52 208.0 197 52.8
Hund21079 Selenicereus undatus HOM05D006640 ORTHO05D008078 6.6e-52 208.0 196 55.1
Cc10_g14910 Coffea canephora HOM05D006640 ORTHO05D008078 8.7e-52 207.6 200 54.0
Gohir.A09G046800 Gossypium hirsutum HOM05D006640 ORTHO05D008078 1.5e-51 206.8 203 53.2
EL10Ac3g05131 Beta vulgaris HOM05D006640 ORTHO05D008078 5.6e-51 204.9 197 54.3
Peaxi162Scf00680g00119 Petunia axillaris HOM05D006640 ORTHO05D008078 7.3e-51 204.5 198 53.5
Oeu011315.3 Olea europaea HOM05D006640 ORTHO05D008078 1.2e-50 203.8 205 53.2
Lj6g0027905 Lotus japonicus HOM05D006640 ORTHO05D008078 2.8e-50 202.6 199 49.7
SalBow1G3286 Salvia bowleyana HOM05D006640 ORTHO05D008078 8.1e-50 201.1 200 50.5
Cfa020797 Carpinus fangiana HOM05D006640 ORTHO05D008078 1.4e-49 200.3 187 52.9
Cfa010319 Carpinus fangiana HOM05D006640 ORTHO05D008078 3.1e-49 199.1 187 53.5
SalBow7G4342 Salvia bowleyana HOM05D006640 ORTHO05D008078 3.1e-49 199.1 200 50.5
SGA_v2.0_scaffold184G39969 Striga asiatica HOM05D006640 ORTHO05D008078 3.1e-49 199.1 198 54.0
RcHm_v2.0_Chr7g0215911 Rosa chinensis HOM05D006640 ORTHO05D008078 6.9e-49 198.0 198 53.5
CSS0036253 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 2.0e-48 196.4 184 54.3
Aqoxy6G01598 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 7.6e-48 194.5 196 48.0
Medtr4g032370 Medicago truncatula HOM05D006640 ORTHO05D008078 9.9e-48 194.1 198 50.0
Ca_19713_v3 Cicer arietinum L. HOM05D006640 ORTHO05D008078 1.3e-47 193.7 236 43.6
ECA232G3411 Erigeron canadensis HOM05D006640 ORTHO05D008078 1.7e-47 193.4 197 49.7
Medtr1g103240 Medicago truncatula HOM05D006640 ORTHO05D008078 2.9e-47 192.6 197 48.7
COL.COLO4_22727 Corchorus olitorius HOM05D006640 ORTHO05D008078 4.9e-47 191.8 185 53.5
PGR083G0938 Punica granatum HOM05D006640 ORTHO05D008078 4.9e-47 191.8 197 50.8
CANSAT54G1336 Cannabis sativa HOM05D006640 ORTHO05D008078 8.4e-47 191.0 196 50.0
FAN08G2005 Fragaria x ananassa HOM05D006640 ORTHO05D008078 8.4e-47 191.0 195 51.3
HanXRQChr05g0147651 Helianthus annuus HOM05D006640 ORTHO05D008078 8.4e-47 191.0 197 49.7
CSS0028139 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 1.4e-46 190.3 197 49.7
Duzib205G0266 Durio zibethinus HOM05D006640 ORTHO05D008078 2.4e-46 189.5 185 53.0
Rhsim08G0078300 Rhododendron simsii HOM05D006640 ORTHO05D008078 3.2e-46 189.1 184 52.7
Psat7g226480 Pisum sativum HOM05D006640 ORTHO05D008078 1.6e-45 186.8 198 47.5
HanXRQChr02g0057271 Helianthus annuus HOM05D006640 ORTHO05D008078 2.7e-45 186.0 197 49.7
TPR.G34155 Trifolium pratense HOM05D006640 ORTHO05D008078 2.7e-45 186.0 198 47.5
ATR0807G089 Amborella trichopoda HOM05D006640 ORTHO05D008078 3.5e-45 185.7 199 48.2
Glyma.08G337400 Glycine max HOM05D001876 ORTHO05D002002 6.0e-45 184.9 199 48.2
CDE02G0900 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 3.0e-44 182.6 199 44.7
DCAR_013930 Daucus carota HOM05D006640 ORTHO05D008078 3.9e-44 182.2 206 48.1
ClCG02G003390 Citrullus lanatus HOM05D006640 ORTHO05D008078 3.3e-43 179.1 199 46.7
Dinv27390 Davidia involucrata HOM05D006640 ORTHO05D008078 4.3e-43 178.7 169 53.8
SalBow6G0872 Salvia bowleyana HOM05D006640 ORTHO05D008078 5.6e-43 178.3 190 48.4
MBI06_g19633_MAGBIO Magnolia biondii HOM05D006640 ORTHO05D008078 1.3e-42 177.2 179 50.3
PSO541G3394 Papaver somniferum HOM05D006640 ORTHO05D008078 1.3e-42 177.2 202 47.5
PSO675G3428 Papaver somniferum HOM05D006640 ORTHO05D008078 2.8e-42 176.0 202 47.5
MELO3C013247.2 Cucumis melo HOM05D006640 ORTHO05D008078 4.8e-42 175.3 199 46.2
Hma1.2p1_0612F.1_g188900 Hydrangea macrophylla HOM05D006640 ORTHO05D008078 1.1e-41 174.1 154 54.5
CsaV3_7G001930 Cucumis sativus L. HOM05D006640 ORTHO05D008078 2.4e-41 172.9 199 45.2
Glyma.08G337600 Glycine max HOM05D003402 ORTHO05D003939 2.4e-41 172.9 184 47.8
Cpa.g.sc26.165 Carica papaya HOM05D006640 ORTHO05D008078 3.1e-41 172.6 184 47.3
FAN13G1910 Fragaria x ananassa HOM05D006640 ORTHO05D008078 2.6e-40 169.5 232 43.1
AUR62005948 Chenopodium quinoa HOM05D006640 ORTHO05D008078 1.7e-39 166.8 184 46.2
Os10g0566900 Oryza sativa ssp. japonica HOM05D006640 ORTHO05D008078 1.4e-38 163.7 196 43.9
MD08G1245100 Malus domestica HOM05D006640 ORTHO05D008078 4.2e-38 162.2 163 50.9
unitig_46.g18025 Utricularia gibba HOM05D006640 ORTHO05D008078 5.4e-38 161.8 204 42.6
Lsat_1_v5_gn_9_28760 Lactuca sativa HOM05D006640 ORTHO05D008078 7.9e-37 157.9 184 46.7
Ah.13g071040 Amaranthus hybridus HOM05D006277 ORTHO05D008078 1.8e-36 156.8 249 37.3
Phvul.008G111000 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 1.8e-36 156.8 184 43.5
Lsat_1_v5_gn_0_27580 Lactuca sativa HOM05D006640 ORTHO05D008078 5.6e-35 151.8 197 44.2
AUR62028117 Chenopodium quinoa HOM05D006640 ORTHO05D008078 1.5e-32 143.7 176 43.8
SHI14582 Sapria himalayana HOM05D006640 ORTHO05D008078 1.5e-32 143.7 162 47.5
Nn5g31001 Nelumbo nucifera HOM05D006640 ORTHO05D008078 5.8e-32 141.7 144 51.4
Sabra05G0196400 Salix brachista HOM05D006640 ORTHO05D008078 9.9e-32 141.0 186 41.9
HPP92_007449 Vanilla planifolia HOM05D006640 ORTHO05D008078 2.2e-31 139.8 182 40.1
Mapoly0033s0101 Marchantia polymorpha HOM05D006640 ORTHO05D008078 2.5e-30 136.3 199 38.7
Pp3c20_21140 Physcomitrium patens HOM05D000227 ORTHO05D008078 5.5e-30 135.2 182 39.6
Sed0007887 Sechium edule HOM05D006640 ORTHO05D008078 7.9e-29 131.3 146 45.9
VMungo0540G0999 Vigna mungo HOM05D006640 ORTHO05D008078 1.1e-27 127.5 145 46.2
Nitab4.5_0001208g0130 Nicotiana tabacum HOM05D006640 ORTHO05D008078 3.3e-27 125.9 115 57.4
Phvul.006G070300 Phaseolus vulgaris HOM05D006640 ORTHO05D008078 5.6e-27 125.2 139 46.8
Aqoxy2G03352 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 4.5e-24 115.5 128 42.2
Sc24g0000300 Simmondsia chinensis HOM05D006640 ORTHO05D008078 1.7e-23 113.6 117 51.3
Zm00001eb327920 Zea mays HOM05D006640 ORTHO05D008078 1.1e-22 110.9 155 38.1
Nitab4.5_0000383g0410 Nicotiana tabacum HOM05D006640 ORTHO05D008078 2.5e-22 109.8 110 54.5
CSS0011114 Camellia sinensis var. sinensis HOM05D006640 ORTHO05D008078 7.1e-22 108.2 144 39.6
Gohir.D09G047201 Gossypium hirsutum HOM05D006640 ORTHO05D008078 2.7e-21 106.3 111 46.8
AagrBONN_evm.TU.Sc2ySwM_362.2824 Anthoceros agrestis HOM05D006640 ORTHO05D008078 2.3e-20 103.2 144 39.6
Lj4C809G7 Lonicera japonica HOM05D006640 ORTHO05D008078 1.3e-18 97.4 145 36.6
Actinidia35855 Actinidia chinensis HOM05D002342 ORTHO05D002407 1.6e-18 97.1 84 57.1
Cfa015562 Carpinus fangiana HOM05D006640 ORTHO05D008078 3.7e-18 95.9 185 31.4
Nitab4.5_0010095g0020 Nicotiana tabacum HOM05D006640 ORTHO05D008078 4.8e-18 95.5 87 55.2
RcHm_v2.0_Chr3g0481381 Rosa chinensis HOM05D006640 ORTHO05D008078 2.6e-16 89.7 105 41.0
Duzib205G1379 Durio zibethinus HOM05D006640 ORTHO05D008078 1.0e-15 87.8 129 38.0
RcHm_v2.0_Chr3g0481391 Rosa chinensis HOM05D006640 ORTHO05D008078 1.4e-14 84.0 84 51.2
Peaxi162Scf00139g00094 Petunia axillaris HOM05D006640 ORTHO05D008078 7.2e-14 81.6 79 51.9
MCO04G502 Micromonas commoda HOM05D006640 ORTHO05D008078 8.8e-12 74.7 189 27.5
Atru.chr3.42 Acer truncatum HOM05D006640 ORTHO05D008078 5.7e-11 72.0 80 47.5
vmacro03672 Vaccinium macrocarpon HOM05D002991 ORTHO05D003480 1.8e-09 67.0 45 66.7
Aqoxy2G03351 Aquilegia oxysepala HOM05D006640 ORTHO05D008078 5.3e-09 65.5 56 57.1
CDE04G0756 Ceratophyllum demersum HOM05D006640 ORTHO05D008078 1.7e-07 60.5 124 29.8
MD08G1245200 Malus domestica HOM05D006640 ORTHO05D008078 6.5e-07 58.5 36 75.0


User provided reference genes

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