Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0480 Capsella rubella HOM05D007923 ORTHO05D009651 3.1e-93 345.1 173 100.0
AT1G47470 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.9e-71 272.7 174 78.7
AT1G45190 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.1e-69 265.4 173 75.7
AL3G23600 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 4.0e-69 265.0 174 78.2
AT3G11990 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.4e-66 255.8 173 73.4
CARHR086550 Cardamine hirsuta HOM05D007923 ORTHO05D009651 1.3e-62 243.4 175 69.7
Sp3g10220 Schrenkiella parvula HOM05D007923 ORTHO05D009651 1.9e-58 229.6 174 67.2
AL1G53940 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 6.7e-56 221.1 173 64.7
AL9U10560 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 2.1e-49 199.5 172 61.6
AL5G13890 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 6.1e-49 198.0 171 58.5
A05p37330 Brassica napus HOM05D007923 ORTHO05D009651 1.3e-48 196.8 174 57.5
BraA05t22530Z Brassica rapa HOM05D007923 ORTHO05D009651 1.3e-48 196.8 174 57.5
Thhalv10022160m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 1.3e-48 196.8 178 60.1
BcaC05g29300 Brassica carinata HOM05D007923 ORTHO05D009651 3.0e-48 195.7 174 56.9
C05p55840 Brassica napus HOM05D007923 ORTHO05D009651 3.0e-48 195.7 174 56.9
BolC5t34253H Brassica oleracea HOM05D007923 ORTHO05D009651 3.0e-48 195.7 174 56.9
AL5G13880 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 8.7e-48 194.1 171 57.3
AT4G13261 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 2.2e-46 189.5 171 59.6
AT4G13263 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 3.7e-46 188.7 171 59.1
AL5G13870 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 1.8e-45 186.4 171 56.1
AT5G35405 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.8e-45 186.4 171 59.6
AL5G13900 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 5.3e-45 184.9 216 47.7
Carub.0006s2829 Capsella rubella HOM05D007923 ORTHO05D009651 5.9e-44 181.4 176 56.8
BcaC05g29301 Brassica carinata HOM05D007923 ORTHO05D009651 1.0e-43 180.6 174 54.6
C05p55860 Brassica napus HOM05D007923 ORTHO05D009651 1.0e-43 180.6 174 54.6
BolC5t34255H Brassica oleracea HOM05D007923 ORTHO05D009651 1.0e-43 180.6 174 54.6
AT1G47450 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.7e-43 179.9 175 59.4
BcaB06g25567 Brassica carinata HOM05D007923 ORTHO05D009651 1.7e-43 179.9 163 57.1
BcaC09g48206 Brassica carinata HOM05D007923 ORTHO05D009651 2.2e-43 179.5 173 57.2
CARHR179580 Cardamine hirsuta HOM05D007923 ORTHO05D009651 2.9e-43 179.1 168 54.8
AL5G13910 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 3.8e-43 178.7 154 55.8
AT2G04031 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.9e-42 176.4 171 56.1
BraA05t22535Z Brassica rapa HOM05D007923 ORTHO05D009651 1.9e-42 176.4 161 55.9
BcaC05g29302 Brassica carinata HOM05D007923 ORTHO05D009651 2.5e-42 176.0 161 56.5
C05p55870 Brassica napus HOM05D007923 ORTHO05D009651 2.5e-42 176.0 161 56.5
BolC5t34256H Brassica oleracea HOM05D007923 ORTHO05D009651 2.5e-42 176.0 161 56.5
A05p37360 Brassica napus HOM05D007923 ORTHO05D009651 7.2e-42 174.5 160 55.6
BraA05t22533Z Brassica rapa HOM05D007923 ORTHO05D009651 7.2e-42 174.5 161 55.9
A05p37350 Brassica napus HOM05D007923 ORTHO05D009651 4.6e-41 171.8 161 55.3
BraA05t22532Z Brassica rapa HOM05D007923 ORTHO05D009651 4.6e-41 171.8 161 55.3
AT2G04041 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 6.1e-41 171.4 173 54.9
BraA05t22534Z Brassica rapa HOM05D007923 ORTHO05D009651 6.1e-41 171.4 161 55.9
BcaB06g25556 Brassica carinata HOM05D007923 ORTHO05D009651 7.9e-41 171.0 161 55.9
AT2G04037 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.4e-40 170.2 173 54.3
BcaC05g29304 Brassica carinata HOM05D007923 ORTHO05D009651 1.4e-40 170.2 161 54.7
C05p55880 Brassica napus HOM05D007923 ORTHO05D009651 1.4e-40 170.2 161 54.7
BolC5t34257H Brassica oleracea HOM05D007923 ORTHO05D009651 1.4e-40 170.2 161 54.7
A05p37340 Brassica napus HOM05D007923 ORTHO05D009651 3.9e-40 168.7 161 54.7
BraA05t22531Z Brassica rapa HOM05D007923 ORTHO05D009651 3.9e-40 168.7 161 54.7
C05p55890 Brassica napus HOM05D007923 ORTHO05D009651 3.7e-38 162.2 161 52.2
BolC1t05274H Brassica oleracea HOM05D007923 ORTHO05D009651 3.7e-38 162.2 161 56.5
BolC5t34258H Brassica oleracea HOM05D007923 ORTHO05D009651 3.7e-38 162.2 161 52.2
BraA01t04147Z Brassica rapa HOM05D007923 ORTHO05D009651 1.8e-37 159.8 161 55.3
THA.LOC104799715 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 7.7e-36 154.5 173 47.4
BcaC05g29305 Brassica carinata HOM05D007923 ORTHO05D009651 8.5e-35 151.0 147 50.3
THA.LOC104810160 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 2.3e-32 142.9 156 49.4
BcaB04g20407 Brassica carinata HOM05D007923 ORTHO05D009651 3.0e-32 142.5 129 55.0
C06p22200 Brassica napus HOM05D007923 ORTHO05D009651 1.9e-26 123.2 158 46.8
BolC6t37406H Brassica oleracea HOM05D007923 ORTHO05D009651 1.4e-24 117.1 158 45.6
Carub.0001s4211 Capsella rubella HOM05D007923 ORTHO05D009651 1.4e-24 117.1 117 43.6
THA.LOC104824530 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 1.8e-24 116.7 127 45.7
CARHR043170 Cardamine hirsuta HOM05D007923 ORTHO05D009651 7.5e-23 111.3 173 35.8
AT1G52970 Arabidopsis thaliana HOM05D007923 ORTHO05D009651 1.8e-21 106.7 128 40.6
Thhalv10012072m.g Eutrema salsugineum HOM05D007923 ORTHO05D009651 2.4e-21 106.3 174 36.8
Sp1g39520 Schrenkiella parvula HOM05D007923 ORTHO05D009651 2.4e-21 106.3 124 40.3
AL1G61300 Arabidopsis lyrata HOM05D007923 ORTHO05D009651 9.1e-21 104.4 173 34.1
CARHR103140 Cardamine hirsuta HOM05D007923 ORTHO05D009651 3.5e-20 102.4 173 33.5
BcaC09g48207 Brassica carinata HOM05D007923 ORTHO05D009651 2.2e-19 99.8 168 43.5
BcaC08g44686 Brassica carinata HOM05D007923 ORTHO05D009651 3.8e-19 99.0 82 53.7
THA.LOC104803521 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 2.5e-18 96.3 173 35.3
COL.COLO4_10003 Corchorus olitorius HOM05D007923 ORTHO05D009651 1.0e-16 90.9 162 35.2
THA.LOC104813239 Tarenaya hassleriana HOM05D007923 ORTHO05D009651 3.7e-14 82.4 104 40.4
C05p55900 Brassica napus HOM05D007923 ORTHO05D009651 4.1e-13 79.0 52 59.6
THA.LOC104817628 Tarenaya hassleriana HOM05D007923 ORTHO05D009976 4.1e-13 79.0 120 37.5
Cpa.g.sc4.156 Carica papaya HOM05D007923 ORTHO05D009651 5.4e-13 78.6 114 36.0
AL3G11060 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 7.0e-13 78.2 104 38.5
Eucgr.C00224 Eucalyptus grandis HOM05D007923 ORTHO05D009651 2.7e-12 76.3 76 38.2
Thhalv10000516m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 3.5e-12 75.9 138 33.3
Carub.0006s2294 Capsella rubella HOM05D007888 ORTHO05D009976 4.5e-12 75.5 149 28.9
Sp4g04720 Schrenkiella parvula HOM05D007888 ORTHO05D009976 4.5e-12 75.5 129 34.1
Sp4g04740 Schrenkiella parvula HOM05D007888 ORTHO05D009976 2.9e-11 72.8 138 31.9
Thecc.05G151700 Theobroma cacao HOM05D001614 ORTHO05D000988 2.9e-11 72.8 87 39.1
COL.COLO4_13737 Corchorus olitorius HOM05D001614 ORTHO05D000988 3.8e-11 72.4 79 39.2
Eucgr.C00225 Eucalyptus grandis HOM05D008402 ORTHO05D009651 3.8e-11 72.4 80 36.2
QL02p094689 Quercus lobata HOM05D008402 ORTHO05D009651 5.0e-11 72.0 106 35.8
AT3G29797 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.1e-10 70.9 106 32.1
AT3G01185 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 1.9e-10 70.1 104 35.6
AL4G10990 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 2.5e-10 69.7 163 27.6
Eucgr.C00226 Eucalyptus grandis HOM05D042140 ORTHO05D009651 2.5e-10 69.7 80 35.0
Thecc.09G158400 Theobroma cacao HOM05D002073 ORTHO05D001803 3.2e-10 69.3 86 34.9
C05p55910 Brassica napus HOM05D007923 ORTHO05D009651 7.2e-10 68.2 65 60.0
BolC5t34259H Brassica oleracea HOM05D007923 ORTHO05D009651 7.2e-10 68.2 65 60.0
AL4G10980 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 9.4e-10 67.8 163 24.5
BcaC08g44685 Brassica carinata HOM05D007923 ORTHO05D009651 9.4e-10 67.8 70 57.1
Carub.0003s0096 Capsella rubella HOM05D007888 ORTHO05D009976 9.4e-10 67.8 105 33.3
AT2G21727 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 2.1e-09 66.6 103 33.0
Thhalv10005636m.g Eutrema salsugineum HOM05D007888 ORTHO05D009976 2.7e-09 66.2 121 30.6
Cpa.g.sc127.52 Carica papaya HOM05D014073 ORTHO05D014166 3.6e-09 65.9 94 37.2
Sp2g20590 Schrenkiella parvula HOM05D007888 ORTHO05D009976 3.6e-09 65.9 168 31.0
AT2G21655 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 6.1e-09 65.1 164 27.4
BolC1t05244H Brassica oleracea HOM05D007888 ORTHO05D009976 1.8e-08 63.5 131 29.0
BcaC01g00727 Brassica carinata HOM05D007888 ORTHO05D009976 3.0e-08 62.8 109 29.4
AT3G30247 Arabidopsis thaliana HOM05D007888 ORTHO05D009976 4.0e-08 62.4 164 24.4
COL.COLO4_33207 Corchorus olitorius HOM05D001614 ORTHO05D000988 4.0e-08 62.4 81 37.0
Eucgr.B01478 Eucalyptus grandis HOM05D013157 ORTHO05D017001 4.0e-08 62.4 78 39.7
C01p53000 Brassica napus HOM05D007888 ORTHO05D009976 5.2e-08 62.0 131 29.0
DCAR_002296 Daucus carota HOM05D010700 ORTHO05D012225 5.2e-08 62.0 139 27.3
BcaB04g21393 Brassica carinata HOM05D007888 ORTHO05D009976 6.8e-08 61.6 164 26.2
BcaC09g48217 Brassica carinata HOM05D007888 ORTHO05D009976 6.8e-08 61.6 126 31.0
BolC1t05261H Brassica oleracea HOM05D007888 ORTHO05D009976 6.8e-08 61.6 126 31.0
BolC1t05218H Brassica oleracea HOM05D007888 ORTHO05D009976 1.2e-07 60.8 164 24.4
C01p52800 Brassica napus HOM05D007888 ORTHO05D009976 1.5e-07 60.5 164 24.4
C01p52860 Brassica napus HOM05D007888 ORTHO05D009976 2.0e-07 60.1 164 23.2
BolC1t05221H Brassica oleracea HOM05D007888 ORTHO05D009976 2.0e-07 60.1 164 23.8
Carub.0004s0518 Capsella rubella HOM05D007888 ORTHO05D009976 2.0e-07 60.1 98 28.6
C01p53160 Brassica napus HOM05D007888 ORTHO05D009976 2.6e-07 59.7 76 34.2
Glyma.05G076900 Glycine max HOM05D008402 ORTHO05D000988 2.6e-07 59.7 81 29.6
BolC1t05223H Brassica oleracea HOM05D007888 ORTHO05D009976 3.4e-07 59.3 151 23.8
Lalb_Chr08g0236561 Lupinus albus HOM05D008402 ORTHO05D000988 3.4e-07 59.3 100 30.0
BcaC09g48237 Brassica carinata HOM05D007888 ORTHO05D009976 4.4e-07 58.9 164 24.4
C01p52810 Brassica napus HOM05D007888 ORTHO05D009976 4.4e-07 58.9 164 23.2
C01p52840 Brassica napus HOM05D007888 ORTHO05D009976 4.4e-07 58.9 164 23.2
Eucgr.L00146 Eucalyptus grandis HOM05D008521 ORTHO05D001803 5.7e-07 58.5 74 29.7
Glyma.06G245800 Glycine max HOM05D010700 ORTHO05D012225 5.7e-07 58.5 79 31.6
Rhsim03G0156800 Rhododendron simsii HOM05D008521 ORTHO05D009651 5.7e-07 58.5 91 28.6
AL4G16900 Arabidopsis lyrata HOM05D007888 ORTHO05D009976 7.5e-07 58.2 94 29.8
BcaC09g48239 Brassica carinata HOM05D007888 ORTHO05D009976 9.8e-07 57.8 164 23.2
Medtr2g438130 Medicago truncatula HOM05D010700 ORTHO05D012225 9.8e-07 57.8 80 33.8
Psat4g125080 Pisum sativum HOM05D010700 ORTHO05D012225 9.8e-07 57.8 80 35.0
C01p52820 Brassica napus HOM05D007888 ORTHO05D009976 1.3e-06 57.4 164 23.2
BolC1t05219H Brassica oleracea HOM05D007888 ORTHO05D009976 1.3e-06 57.4 164 23.2
Rhsim01G0015900 Rhododendron simsii HOM05D010700 ORTHO05D012225 1.3e-06 57.4 120 27.5
TPR.G36159 Trifolium pratense HOM05D010700 ORTHO05D012225 1.3e-06 57.4 76 35.5
C01p53020 Brassica napus HOM05D007888 ORTHO05D009976 1.7e-06 57.0 170 24.7
Carub.0004s0516 Capsella rubella HOM05D007888 ORTHO05D009976 1.7e-06 57.0 96 25.0
Dinv34528 Davidia involucrata HOM05D008521 ORTHO05D012225 1.7e-06 57.0 82 39.0
Lj1g0018215 Lotus japonicus HOM05D008402 ORTHO05D000988 1.7e-06 57.0 113 30.1
BolC1t05220H Brassica oleracea HOM05D007888 ORTHO05D009976 2.2e-06 56.6 164 22.6
DCAR_020097 Daucus carota HOM05D022492 ORTHO05D025233 3.7e-06 55.8 95 28.4
Glyma.06G245700 Glycine max HOM05D010700 ORTHO05D012225 3.7e-06 55.8 77 31.2
MD13G1274700 Malus domestica HOM05D025175 ORTHO05D009651 3.7e-06 55.8 165 27.9
BcaC09g48240 Brassica carinata HOM05D007888 ORTHO05D009976 4.9e-06 55.5 164 23.2
CARHR112800 Cardamine hirsuta HOM05D007888 ORTHO05D009976 4.9e-06 55.5 161 26.7
Gohir.D05G328910 Gossypium hirsutum HOM05D002073 ORTHO05D001803 4.9e-06 55.5 78 35.9
Medtr6g007660 Medicago truncatula HOM05D010700 ORTHO05D012225 4.9e-06 55.5 80 31.2
C01p52830 Brassica napus HOM05D007888 ORTHO05D009976 6.3e-06 55.1 164 24.4
C01p52850 Brassica napus HOM05D007888 ORTHO05D009976 6.3e-06 55.1 164 24.4
Glyma.19G071100 Glycine max HOM05D008402 ORTHO05D000988 6.3e-06 55.1 108 24.1
Medtr5g097880 Medicago truncatula HOM05D010700 ORTHO05D012225 6.3e-06 55.1 80 31.2
BcaC07g40200 Brassica carinata HOM05D007888 ORTHO05D009976 8.3e-06 54.7 163 27.0
C01p52970 Brassica napus HOM05D007888 ORTHO05D009976 8.3e-06 54.7 68 36.8
Gohir.D05G326600 Gossypium hirsutum HOM05D002073 ORTHO05D001803 8.3e-06 54.7 78 37.2


User provided reference genes

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