Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0422 Capsella rubella HOM05D003630 ORTHO05D004151 2.2e-60 235.3 113 100.0
AL8G15690 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 1.0e-57 226.5 115 96.5
AT5G44300 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 1.1e-56 223.0 115 94.8
Sp2g09130 Schrenkiella parvula HOM05D003630 ORTHO05D004151 1.3e-52 209.5 115 87.8
Thhalv10003427m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 2.2e-52 208.8 114 89.5
A02p28330 Brassica napus HOM05D003630 ORTHO05D004151 3.8e-52 208.0 115 87.8
C02p44910 Brassica napus HOM05D003630 ORTHO05D004151 5.0e-52 207.6 115 87.8
BolC2t10526H Brassica oleracea HOM05D003630 ORTHO05D004151 5.0e-52 207.6 115 87.8
BraA02t07868Z Brassica rapa HOM05D003630 ORTHO05D004151 5.0e-52 207.6 115 87.8
Aa31LG9G8870 Aethionema arabicum HOM05D003630 ORTHO05D004151 3.0e-49 198.4 113 83.2
BcaC03g16649 Brassica carinata HOM05D003630 ORTHO05D004151 3.1e-46 188.3 103 88.3
CARHR178890 Cardamine hirsuta HOM05D003630 ORTHO05D004151 1.3e-44 183.0 119 79.8
BcaB07g30534 Brassica carinata HOM05D003630 ORTHO05D004151 1.2e-42 176.4 99 86.9
Aa31LG9G7730 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.3e-31 139.8 90 76.7
AT2G33830 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 2.9e-28 128.6 108 56.5
BcaC02g11461 Brassica carinata HOM05D003630 ORTHO05D004151 6.6e-28 127.5 109 57.8
C04p15210 Brassica napus HOM05D003630 ORTHO05D004151 6.6e-28 127.5 109 57.8
BolC4t23094H Brassica oleracea HOM05D003630 ORTHO05D004151 6.6e-28 127.5 109 57.8
BcaB02g10597 Brassica carinata HOM05D003630 ORTHO05D004151 1.9e-27 125.9 110 57.3
ClCG03G008090 Citrullus lanatus HOM05D003630 ORTHO05D004151 1.9e-27 125.9 112 58.0
A05p11750 Brassica napus HOM05D003630 ORTHO05D004151 2.5e-27 125.6 110 57.3
BraA05t20119Z Brassica rapa HOM05D003630 ORTHO05D004151 2.5e-27 125.6 110 57.3
Carub.0004s1550 Capsella rubella HOM05D003630 ORTHO05D004151 2.5e-27 125.6 111 56.8
BolC3t14590H Brassica oleracea HOM05D003630 ORTHO05D004151 3.3e-27 125.2 108 55.6
Gohir.A05G159800 Gossypium hirsutum HOM05D003630 ORTHO05D004151 3.3e-27 125.2 120 57.5
BcaB01g03917 Brassica carinata HOM05D003630 ORTHO05D004151 4.3e-27 124.8 111 55.9
BcaC01g05821 Brassica carinata HOM05D003630 ORTHO05D004151 4.3e-27 124.8 111 55.9
BcaC01g05822 Brassica carinata HOM05D003630 ORTHO05D004151 4.3e-27 124.8 111 55.9
A03p18920 Brassica napus HOM05D003630 ORTHO05D004151 4.3e-27 124.8 111 55.9
BraA03t11151Z Brassica rapa HOM05D003630 ORTHO05D004151 4.3e-27 124.8 111 55.9
Aa31sc652G110 Aethionema arabicum HOM05D003630 ORTHO05D004151 5.6e-27 124.4 110 53.6
Aa31sc652G20 Aethionema arabicum HOM05D003630 ORTHO05D004151 5.6e-27 124.4 110 53.6
Sp4g16220 Schrenkiella parvula HOM05D003630 ORTHO05D004151 5.6e-27 124.4 110 55.5
Gohir.D05G162500 Gossypium hirsutum HOM05D003630 ORTHO05D004151 9.5e-27 123.6 120 57.5
AL4G29600 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 2.8e-26 122.1 114 55.3
CARHR127940 Cardamine hirsuta HOM05D003630 ORTHO05D004151 4.7e-26 121.3 108 55.6
TAR624G0603 Trochodendron aralioides HOM05D003630 ORTHO05D004151 1.0e-25 120.2 116 53.4
Carub.0001s2678 Capsella rubella HOM05D003630 ORTHO05D004151 1.4e-25 119.8 127 49.6
CiPaw.10G051200 Carya illinoinensis HOM05D003630 ORTHO05D004151 2.3e-25 119.0 124 52.4
Hma1.2p1_0208F.1_g088370 Hydrangea macrophylla HOM05D003630 ORTHO05D004151 3.0e-25 118.6 128 52.3
arahy.Tifrunner.gnm1.ann1.H8XLFU Arachis hypogaea HOM05D003630 ORTHO05D004151 4.0e-25 118.2 117 56.4
arahy.Tifrunner.gnm1.ann1.S1G93A Arachis hypogaea HOM05D003630 ORTHO05D004151 4.0e-25 118.2 117 56.4
vmacro15923 Vaccinium macrocarpon HOM05D003630 ORTHO05D004151 5.2e-25 117.9 126 52.4
Peaxi162Scf01100g00009 Petunia axillaris HOM05D003630 ORTHO05D004151 6.8e-25 117.5 121 48.8
Thhalv10009086m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 8.9e-25 117.1 125 48.0
THA.LOC104812301 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 8.9e-25 117.1 117 56.4
PGSC0003DMG400029732 Solanum tuberosum HOM05D003630 ORTHO05D004151 1.2e-24 116.7 121 52.9
Solyc02g077880.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 1.5e-24 116.3 122 52.5
Sopen02g022730 Solanum pennellii HOM05D003630 ORTHO05D004151 1.5e-24 116.3 122 52.5
Sed0001316 Sechium edule HOM05D003630 ORTHO05D004151 2.0e-24 115.9 111 55.0
Lj6g0013661 Lotus japonicus HOM05D003630 ORTHO05D004151 2.6e-24 115.5 117 53.8
Nitab4.5_0003487g0100 Nicotiana tabacum HOM05D003630 ORTHO05D004151 2.6e-24 115.5 127 48.0
BcaB07g32449 Brassica carinata HOM05D003630 ORTHO05D004151 3.4e-24 115.2 124 49.2
Migut.M01120 Erythranthe guttata HOM05D003630 ORTHO05D004151 3.4e-24 115.2 126 49.2
PGR042G3375 Punica granatum HOM05D003630 ORTHO05D004151 3.4e-24 115.2 116 52.6
SalBow8G2511 Salvia bowleyana HOM05D003630 ORTHO05D004151 3.4e-24 115.2 118 49.2
BcaC05g26841 Brassica carinata HOM05D003630 ORTHO05D004151 4.4e-24 114.8 120 48.3
Ah.09g237490 Amaranthus hybridus HOM05D003630 ORTHO05D004151 5.7e-24 114.4 125 52.0
Cpa.g.sc373.3 Carica papaya HOM05D003630 ORTHO05D004151 5.7e-24 114.4 122 50.8
CsaV3_1G012460 Cucumis sativus L. HOM05D003630 ORTHO05D004151 9.8e-24 113.6 112 53.6
PGSC0003DMG400012826 Solanum tuberosum HOM05D003630 ORTHO05D004151 9.8e-24 113.6 131 46.6
MELO3C002620.2 Cucumis melo HOM05D003630 ORTHO05D004151 1.3e-23 113.2 112 53.6
PGR004G0839 Punica granatum HOM05D003630 ORTHO05D004151 1.3e-23 113.2 126 50.0
Aa31sc86G60 Aethionema arabicum HOM05D003630 ORTHO05D004151 1.7e-23 112.8 106 57.5
Manes.17G047900 Manihot esculenta HOM05D003630 ORTHO05D004151 1.7e-23 112.8 117 51.3
SGA_v2.0_scaffold100G29703 Striga asiatica HOM05D003630 ORTHO05D004151 1.7e-23 112.8 120 50.8
Duzib160G0312 Durio zibethinus HOM05D003630 ORTHO05D004151 2.2e-23 112.5 116 52.6
ATR0752G193 Amborella trichopoda HOM05D003630 ORTHO05D004151 2.9e-23 112.1 123 48.8
Migut.H01476 Erythranthe guttata HOM05D003630 ORTHO05D004151 2.9e-23 112.1 125 47.2
Nitab4.5_0000516g0130 Nicotiana tabacum HOM05D003630 ORTHO05D004151 3.7e-23 111.7 126 46.8
CiPaw.09G062300 Carya illinoinensis HOM05D003630 ORTHO05D004151 4.9e-23 111.3 120 50.8
Gohir.A06G129700 Gossypium hirsutum HOM05D003630 ORTHO05D004151 4.9e-23 111.3 114 53.5
Gohir.D06G133900 Gossypium hirsutum HOM05D003630 ORTHO05D004151 4.9e-23 111.3 114 53.5
Prupe.4G050800 Prunus persica HOM05D003630 ORTHO05D004151 4.9e-23 111.3 120 49.2
Cc02_g13650 Coffea canephora HOM05D003630 ORTHO05D004151 6.4e-23 110.9 130 47.7
arahy.Tifrunner.gnm1.ann1.Q5B35H Arachis hypogaea HOM05D003630 ORTHO05D004151 8.3e-23 110.5 129 50.4
Sed0024812 Sechium edule HOM05D003630 ORTHO05D004151 8.3e-23 110.5 115 53.9
C03p22060 Brassica napus HOM05D003630 ORTHO05D004151 1.1e-22 110.2 100 55.0
Lalb_Chr15g0089711 Lupinus albus HOM05D003630 ORTHO05D004151 1.1e-22 110.2 116 53.4
VMungo0540G1118 Vigna mungo HOM05D003630 ORTHO05D004151 1.1e-22 110.2 120 51.7
Phvul.006G183600 Phaseolus vulgaris HOM05D003630 ORTHO05D004151 1.4e-22 109.8 120 51.7
Solyc03g006360.3 Solanum lycopersicum HOM05D003630 ORTHO05D004151 1.4e-22 109.8 132 44.7
TAR626G1897 Trochodendron aralioides HOM05D003630 ORTHO05D004151 1.4e-22 109.8 122 52.5
Dinv17335 Davidia involucrata HOM05D003630 ORTHO05D004151 1.8e-22 109.4 124 49.2
Thhalv10017461m.g Eutrema salsugineum HOM05D003630 ORTHO05D004151 1.8e-22 109.4 111 49.5
Oeu012144.1 Olea europaea HOM05D003630 ORTHO05D004151 1.8e-22 109.4 125 48.0
THA.LOC104814224 Tarenaya hassleriana HOM05D003630 ORTHO05D004151 1.8e-22 109.4 112 50.9
TWI38G1513 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 1.8e-22 109.4 120 49.2
MSTRG.13203 Avicennia marina HOM05D003630 ORTHO05D004151 3.2e-22 108.6 121 47.1
ClCG01G023140 Citrullus lanatus HOM05D003630 ORTHO05D004151 3.2e-22 108.6 123 49.6
unitig_749.g13657 Utricularia gibba HOM05D003630 ORTHO05D004151 3.2e-22 108.6 124 49.2
Actinidia07592 Actinidia chinensis HOM05D003630 ORTHO05D004151 4.1e-22 108.2 123 48.0
Oeu056100.2 Olea europaea HOM05D003630 ORTHO05D004151 4.1e-22 108.2 122 47.5
RcHm_v2.0_Chr5g0008921 Rosa chinensis HOM05D003630 ORTHO05D004151 5.4e-22 107.8 114 50.0
QL05p041782 Quercus lobata HOM05D003630 ORTHO05D004151 7.0e-22 107.5 121 48.8
Sed0017838 Sechium edule HOM05D003630 ORTHO05D004151 1.6e-21 106.3 123 49.6
Aqoxy1G02347 Aquilegia oxysepala HOM05D003630 ORTHO05D004151 2.7e-21 105.5 119 47.9
AT1G28330 Arabidopsis thaliana HOM05D003630 ORTHO05D004151 2.7e-21 105.5 112 49.1
Nn1g04163 Nelumbo nucifera HOM05D003630 ORTHO05D004151 3.5e-21 105.1 122 47.5
TPR.G16501 Trifolium pratense HOM05D003630 ORTHO05D004151 3.5e-21 105.1 115 51.3
CDE11G0243 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 4.6e-21 104.8 120 46.7
AUR62017046 Chenopodium quinoa HOM05D003630 ORTHO05D004151 4.6e-21 104.8 125 46.4
Ca_00350_v3 Cicer arietinum L. HOM05D003630 ORTHO05D004151 4.6e-21 104.8 115 51.3
FAN16G2355 Fragaria x ananassa HOM05D003630 ORTHO05D004151 4.6e-21 104.8 114 48.2
FAN25G0655 Fragaria x ananassa HOM05D003630 ORTHO05D004151 4.6e-21 104.8 114 48.2
Glyma.13G237000 Glycine max HOM05D003630 ORTHO05D004151 4.6e-21 104.8 117 52.1
HPP92_014190 Vanilla planifolia HOM05D003630 ORTHO05D004151 4.6e-21 104.8 117 47.0
GSVIVG01021092001 Vitis vinifera HOM05D003630 ORTHO05D004151 4.6e-21 104.8 120 45.8
arahy.Tifrunner.gnm1.ann1.RY2Y1Z Arachis hypogaea HOM05D003630 ORTHO05D004151 5.9e-21 104.4 129 48.8
Os11g0671000 Oryza sativa ssp. japonica HOM05D003630 ORTHO05D004151 5.9e-21 104.4 127 43.3
FvH4_3g08830 Fragaria vesca HOM05D003630 ORTHO05D004151 1.3e-20 103.2 117 47.0
FAN11G3953 Fragaria x ananassa HOM05D003630 ORTHO05D004151 1.3e-20 103.2 117 47.0
Ciclev10017162m.g Citrus clementina HOM05D003630 ORTHO05D004151 1.7e-20 102.8 122 49.2
FAN21G0750 Fragaria x ananassa HOM05D003630 ORTHO05D004151 1.7e-20 102.8 117 47.0
MBI02_g32444_MAGBIO Magnolia biondii HOM05D003630 ORTHO05D004151 1.7e-20 102.8 127 44.1
AL1G41920 Arabidopsis lyrata HOM05D003630 ORTHO05D004151 2.3e-20 102.4 120 44.2
CSS0035295 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 2.3e-20 102.4 125 48.0
Lalb_Chr09g0327781 Lupinus albus HOM05D003630 ORTHO05D004151 3.0e-20 102.1 120 47.5
Oeu029367.1 Olea europaea HOM05D003630 ORTHO05D004151 3.9e-20 101.7 122 44.3
AUR62014851 Chenopodium quinoa HOM05D003630 ORTHO05D004151 5.0e-20 101.3 123 44.7
CsaV3_6G050280 Cucumis sativus L. HOM05D003630 ORTHO05D004151 6.6e-20 100.9 123 47.2
ECA236G4733 Erigeron canadensis HOM05D003630 ORTHO05D004151 6.6e-20 100.9 120 44.2
Medtr2g014240 Medicago truncatula HOM05D003630 ORTHO05D004151 6.6e-20 100.9 115 48.7
MSTRG.15866 Avicennia marina HOM05D003630 ORTHO05D004151 1.1e-19 100.1 120 45.0
Glyma.15G076500 Glycine max HOM05D003630 ORTHO05D004151 1.1e-19 100.1 120 49.2
HanXRQChr04g0123791 Helianthus annuus HOM05D003630 ORTHO05D004151 1.5e-19 99.8 113 47.8
Lsat_1_v5_gn_1_124360 Lactuca sativa HOM05D003630 ORTHO05D004151 1.5e-19 99.8 105 52.4
CARHR027820 Cardamine hirsuta HOM05D003630 ORTHO05D004151 1.9e-19 99.4 121 44.6
Sp1g24570 Schrenkiella parvula HOM05D003630 ORTHO05D004151 1.9e-19 99.4 119 45.4
CANSAT35G1140 Cannabis sativa HOM05D003630 ORTHO05D004151 2.5e-19 99.0 128 46.1
CAN.G529.26 Capsicum annuum HOM05D003630 ORTHO05D004151 3.3e-19 98.6 67 67.2
Sc24g0001020 Simmondsia chinensis HOM05D003630 ORTHO05D004151 3.3e-19 98.6 112 50.0
Thecc.06G183500 Theobroma cacao HOM05D003630 ORTHO05D004151 3.3e-19 98.6 109 51.4
CSS0033873 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 5.6e-19 97.8 107 49.5
CSS0037340 Camellia sinensis var. sinensis HOM05D003630 ORTHO05D004151 5.6e-19 97.8 110 49.1
Gorai.009G167500 Gossypium raimondii HOM05D003630 ORTHO05D004151 5.6e-19 97.8 101 56.4
HPP92_018480 Vanilla planifolia HOM05D003630 ORTHO05D004151 7.3e-19 97.4 124 45.2
HPP92_018482 Vanilla planifolia HOM05D003630 ORTHO05D004151 7.3e-19 97.4 124 45.2
Atru.chr10.1820 Acer truncatum HOM05D003630 ORTHO05D004151 1.2e-18 96.7 110 47.3
Atru.chr10.1837 Acer truncatum HOM05D003630 ORTHO05D004151 1.2e-18 96.7 110 47.3
EL10Ac8g20421 Beta vulgaris HOM05D003630 ORTHO05D004151 1.6e-18 96.3 126 45.2
CDE05G2086 Ceratophyllum demersum HOM05D003630 ORTHO05D004151 1.6e-18 96.3 120 43.3
PSO541G4117 Papaver somniferum HOM05D003630 ORTHO05D004151 1.6e-18 96.3 126 46.0
DCAR_008021 Daucus carota HOM05D003630 ORTHO05D004151 2.1e-18 95.9 124 44.4
Gorai.010G155600 Gossypium raimondii HOM05D003630 ORTHO05D004151 2.1e-18 95.9 104 51.9
Lalb_Chr18g0059451 Lupinus albus HOM05D003630 ORTHO05D004151 2.1e-18 95.9 119 47.9
CiPaw.04G030300 Carya illinoinensis HOM05D003630 ORTHO05D004151 2.8e-18 95.5 111 48.6
Sopen03g002370 Solanum pennellii HOM05D003630 ORTHO05D004151 2.8e-18 95.5 128 43.8
A09p37730 Brassica napus HOM05D003630 ORTHO05D004151 3.6e-18 95.1 120 44.2
C05p27220 Brassica napus HOM05D003630 ORTHO05D004151 3.6e-18 95.1 120 44.2
BolC5t31435H Brassica oleracea HOM05D003630 ORTHO05D004151 3.6e-18 95.1 118 42.4
BraA09t39285Z Brassica rapa HOM05D003630 ORTHO05D004151 3.6e-18 95.1 120 44.2
DCAR_003387 Daucus carota HOM05D003630 ORTHO05D004151 3.6e-18 95.1 118 40.7
Manes.16G030000 Manihot esculenta HOM05D003630 ORTHO05D004151 1.4e-17 93.2 106 49.1
SEGI_31386 Sequoiadendron giganteum HOM05D003630 ORTHO05D004151 1.4e-17 93.2 139 41.7
MELO3C007269.2 Cucumis melo HOM05D003630 ORTHO05D004151 2.3e-17 92.4 111 48.6
Duzib235G1039 Durio zibethinus HOM05D003630 ORTHO05D004151 3.1e-17 92.0 123 43.9
COL.COLO4_31436 Corchorus olitorius HOM05D003630 ORTHO05D004151 5.2e-17 91.3 121 45.5
Lsat_1_v5_gn_7_20981 Lactuca sativa HOM05D003630 ORTHO05D004151 6.8e-17 90.9 107 41.1
HanXRQChr01g0003821 Helianthus annuus HOM05D003630 ORTHO05D004151 1.5e-16 89.7 124 41.9
PSO675G3190 Papaver somniferum HOM05D003630 ORTHO05D004151 2.6e-16 89.0 115 42.6
Sabra04G0029500 Salix brachista HOM05D003630 ORTHO05D004151 2.6e-16 89.0 108 45.4
Rhsim02G0132700 Rhododendron simsii HOM05D003630 ORTHO05D004151 3.4e-16 88.6 114 47.4
TWI38G1867 Tripterygium wilfordii HOM05D003630 ORTHO05D004151 4.4e-16 88.2 111 47.7
Dinv40586 Davidia involucrata HOM05D003630 ORTHO05D004151 5.8e-16 87.8 112 47.3
Potri.004G047100 Populus trichocarpa HOM05D003630 ORTHO05D004151 5.8e-16 87.8 115 43.5
Psat1g203680 Pisum sativum HOM05D003630 ORTHO05D004151 1.7e-15 86.3 103 47.6
Pp3c15_6160 Physcomitrium patens HOM05D003630 ORTHO05D004151 8.3e-15 84.0 153 38.6
Cfa000510 Carpinus fangiana HOM05D003630 ORTHO05D004151 1.1e-14 83.6 112 44.6
Haze_06402 Corylus avellana HOM05D003630 ORTHO05D004151 2.4e-14 82.4 114 47.4
Sed0007569 Sechium edule HOM05D003630 ORTHO05D004151 7.0e-14 80.9 98 46.9
Sc17g0006070 Simmondsia chinensis HOM05D003630 ORTHO05D004151 1.9e-11 72.8 112 37.5
SMO367G0919 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 3.3e-11 72.0 119 39.5
MD14G1054500 Malus domestica HOM05D003630 ORTHO05D004151 4.3e-11 71.6 95 44.2
SMO343G0126 Selaginella moellendorffii HOM05D003630 ORTHO05D004151 5.6e-11 71.2 159 33.3
ECA248G1596 Erigeron canadensis HOM05D000885 ORTHO05D008875 1.2e-10 70.1 76 52.6
AagrBONN_evm.TU.Sc2ySwM_228.5600 Anthoceros agrestis HOM05D003630 ORTHO05D004151 2.1e-10 69.3 152 32.9
Mapoly0057s0054 Marchantia polymorpha HOM05D003630 ORTHO05D004151 2.1e-10 69.3 141 32.6
Pp3c24_1050 Physcomitrium patens HOM05D003630 ORTHO05D004151 7.5e-08 60.8 153 30.7
PSO223G0021 Papaver somniferum HOM05D002144 ORTHO05D002170 6.4e-07 57.8 127 33.1
AagrBONN_evm.TU.Sc2ySwM_362.1976 Anthoceros agrestis HOM05D003630 ORTHO05D004151 4.1e-06 55.1 71 43.7


User provided reference genes

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