Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0419 Capsella rubella HOM05D004561 ORTHO05D005315 1.0e-78 296.6 143 100.0
Carub.0005s2498 Capsella rubella HOM05D004561 ORTHO05D005315 2.1e-63 245.7 126 92.9
Sp5g04590 Schrenkiella parvula HOM05D004561 ORTHO05D005315 1.0e-57 226.9 126 84.9
Thhalv10002077m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 2.1e-55 219.2 126 82.5
Thhalv10002036m.g Eutrema salsugineum HOM05D004561 ORTHO05D005315 1.0e-54 216.9 126 81.7
CARHR168490 Cardamine hirsuta HOM05D004561 ORTHO05D005315 3.3e-53 211.8 126 79.4
AL5G39820 Arabidopsis lyrata HOM05D004561 ORTHO05D005315 2.8e-52 208.8 126 80.2
AT3G58130 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 3.1e-51 205.3 126 77.8
BraA07t30043Z Brassica rapa HOM05D004561 ORTHO05D005315 2.7e-50 202.2 129 75.2
THA.LOC104822320 Tarenaya hassleriana HOM05D004561 ORTHO05D005315 2.7e-50 202.2 126 75.4
BcaB02g07548 Brassica carinata HOM05D004561 ORTHO05D005315 1.3e-49 199.9 148 64.9
A07p23920 Brassica napus HOM05D004561 ORTHO05D005315 2.5e-48 195.7 126 73.8
BolC6t37673H Brassica oleracea HOM05D004561 ORTHO05D005315 4.2e-48 194.9 126 73.8
C06p25150 Brassica napus HOM05D004561 ORTHO05D005315 3.4e-45 185.3 168 57.1
AT2G27340 Arabidopsis thaliana HOM05D004561 ORTHO05D005315 2.8e-44 182.2 124 74.2
CSS0045511 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 1.4e-43 179.9 126 65.9
QL09p040874 Quercus lobata HOM05D004561 ORTHO05D005315 5.9e-42 174.5 126 62.7
CiPaw.15G149700 Carya illinoinensis HOM05D004561 ORTHO05D005315 7.7e-42 174.1 126 60.3
Hma1.2p1_0018F.1_g012650 Hydrangea macrophylla HOM05D004561 ORTHO05D005315 7.7e-42 174.1 125 63.2
ClCG06G015750 Citrullus lanatus HOM05D000113 ORTHO05D002571 1.3e-41 173.3 125 61.6
MSTRG.11225 Avicennia marina HOM05D004561 ORTHO05D005315 1.7e-41 172.9 126 65.1
Dinv14864 Davidia involucrata HOM05D004561 ORTHO05D005315 1.7e-41 172.9 125 64.0
Ciclev10002226m.g Citrus clementina HOM05D004561 ORTHO05D005315 3.8e-41 171.8 126 66.7
TWI15G0666 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 8.6e-41 170.6 126 64.3
Potri.012G041700 Populus trichocarpa HOM05D004561 ORTHO05D005315 1.5e-40 169.9 127 64.6
GSVIVG01028605001 Vitis vinifera HOM05D004561 ORTHO05D005315 1.5e-40 169.9 126 60.3
MSTRG.22847 Avicennia marina HOM05D004561 ORTHO05D005315 2.5e-40 169.1 126 63.5
Thecc.01G124300 Theobroma cacao HOM05D004561 ORTHO05D005315 2.5e-40 169.1 126 61.1
MELO3C017214.2 Cucumis melo HOM05D004561 ORTHO05D005315 1.2e-39 166.8 125 61.6
C08p33660 Brassica napus HOM05D004561 ORTHO05D005315 1.6e-39 166.4 126 65.1
COL.COLO4_13996 Corchorus olitorius HOM05D004561 ORTHO05D005315 1.6e-39 166.4 126 59.5
Manes.08G062966 Manihot esculenta HOM05D004561 ORTHO05D005315 2.1e-39 166.0 125 64.0
SGA_v2.0_scaffold37G14646 Striga asiatica HOM05D004561 ORTHO05D005315 2.1e-39 166.0 125 62.4
HanXRQChr15g0480201 Helianthus annuus HOM05D004561 ORTHO05D005315 2.8e-39 165.6 126 56.3
BcaC08g44900 Brassica carinata HOM05D004561 ORTHO05D005315 3.6e-39 165.2 126 64.3
TAR628G1415 Trochodendron aralioides HOM05D004561 ORTHO05D005315 6.1e-39 164.5 126 58.7
Sabra12G0028700 Salix brachista HOM05D004561 ORTHO05D005315 8.0e-39 164.1 127 62.2
vmacro21453 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.0e-38 163.7 154 52.6
PGSC0003DMG403029595 Solanum tuberosum HOM05D004561 ORTHO05D005315 1.4e-38 163.3 126 60.3
Nn5g27375 Nelumbo nucifera HOM05D004561 ORTHO05D005315 1.8e-38 162.9 126 57.1
SalBow3G1851 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.3e-38 162.5 140 55.7
Sc18g0002470 Simmondsia chinensis HOM05D004561 ORTHO05D005315 2.3e-38 162.5 126 61.1
AUR62010959 Chenopodium quinoa HOM05D004561 ORTHO05D005315 6.8e-38 161.0 126 61.9
CsaV3_1G002780 Cucumis sativus L. HOM05D004561 ORTHO05D005315 6.8e-38 161.0 125 60.0
Nitab4.5_0000422g0080 Nicotiana tabacum HOM05D004561 ORTHO05D005315 6.8e-38 161.0 126 58.7
Solyc08g074360.3 Solanum lycopersicum HOM05D004561 ORTHO05D005315 8.9e-38 160.6 126 59.5
TWI81G0190 Tripterygium wilfordii HOM05D004561 ORTHO05D005315 8.9e-38 160.6 126 61.1
EL10Ac8g18446 Beta vulgaris HOM05D004561 ORTHO05D005315 1.2e-37 160.2 126 61.1
PGSC0003DMG400009224 Solanum tuberosum HOM05D004561 ORTHO05D005315 2.6e-37 159.1 126 58.7
CiPaw.16G098200 Carya illinoinensis HOM05D004561 ORTHO05D005315 3.4e-37 158.7 126 57.1
Cc03_g07430 Coffea canephora HOM05D004561 ORTHO05D005315 3.4e-37 158.7 128 57.0
Sed0015683 Sechium edule HOM05D004561 ORTHO05D005315 3.4e-37 158.7 127 55.9
Sopen08g022960 Solanum pennellii HOM05D004561 ORTHO05D005315 3.4e-37 158.7 126 58.7
Atru.chr13.142 Acer truncatum HOM05D004561 ORTHO05D005315 4.4e-37 158.3 127 62.2
Haze_18936 Corylus avellana HOM05D004561 ORTHO05D005315 5.7e-37 157.9 118 61.0
Nitab4.5_0000560g0110 Nicotiana tabacum HOM05D004561 ORTHO05D005315 5.7e-37 157.9 126 56.3
Oeu031248.3 Olea europaea HOM05D004561 ORTHO05D005315 5.7e-37 157.9 146 55.5
Prupe.5G069900 Prunus persica HOM05D004561 ORTHO05D005315 5.7e-37 157.9 129 58.9
Gohir.A05G386400 Gossypium hirsutum HOM05D004561 ORTHO05D005315 7.5e-37 157.5 127 62.2
Lsat_1_v5_gn_7_30581 Lactuca sativa HOM05D004561 ORTHO05D005315 9.8e-37 157.1 129 53.5
Sopen08g023020 Solanum pennellii HOM05D004561 ORTHO05D005315 9.8e-37 157.1 126 58.7
Gohir.D04G023500 Gossypium hirsutum HOM05D004561 ORTHO05D005315 1.3e-36 156.8 127 62.2
Gorai.012G033300 Gossypium raimondii HOM05D004561 ORTHO05D005315 1.3e-36 156.8 127 62.2
CAN.G370.25 Capsicum annuum HOM05D004561 ORTHO05D005315 2.2e-36 156.0 126 57.9
PSO761G0502 Papaver somniferum HOM05D004561 ORTHO05D005315 4.9e-36 154.8 126 57.1
Solyc11g017400.2 Solanum lycopersicum HOM05D004561 ORTHO05D005315 4.9e-36 154.8 126 56.3
CAN.G1530.1 Capsicum annuum HOM05D004561 ORTHO05D005315 6.3e-36 154.5 126 57.9
AUR62007426 Chenopodium quinoa HOM05D004561 ORTHO05D005315 6.3e-36 154.5 126 60.3
PSO210G6857 Papaver somniferum HOM05D004561 ORTHO05D005315 1.1e-35 153.7 126 57.1
Rhsim06G0237000 Rhododendron simsii HOM05D004561 ORTHO05D005315 1.4e-35 153.3 165 46.1
Peaxi162Scf00152g00158 Petunia axillaris HOM05D004561 ORTHO05D005315 1.8e-35 152.9 126 54.8
Peaxi162Scf00310g00711 Petunia axillaris HOM05D004561 ORTHO05D005315 1.6e-34 149.8 125 58.4
Lj1A1185G61 Lonicera japonica HOM05D004561 ORTHO05D005315 2.0e-34 149.4 170 44.1
Migut.I00621 Erythranthe guttata HOM05D004561 ORTHO05D005315 5.9e-34 147.9 125 57.6
FAN04G2378 Fragaria x ananassa HOM05D004561 ORTHO05D005315 7.8e-34 147.5 128 55.5
FAN08G3218 Fragaria x ananassa HOM05D004561 ORTHO05D005315 7.8e-34 147.5 128 55.5
ECA233G0879 Erigeron canadensis HOM05D004561 ORTHO05D005315 1.0e-33 147.1 129 55.0
Lalb_Chr12g0208781 Lupinus albus HOM05D004561 ORTHO05D005315 1.0e-33 147.1 127 55.1
RcHm_v2.0_Chr7g0203331 Rosa chinensis HOM05D004561 ORTHO05D005315 1.0e-33 147.1 128 56.2
vmacro18667 Vaccinium macrocarpon HOM05D004561 ORTHO05D005315 1.0e-33 147.1 168 47.0
FvH4_7g18930 Fragaria vesca HOM05D004561 ORTHO05D005315 8.6e-33 144.1 128 53.9
FAN06G2746 Fragaria x ananassa HOM05D004561 ORTHO05D005315 8.6e-33 144.1 128 53.9
FAN06G3856 Fragaria x ananassa HOM05D004561 ORTHO05D005315 8.6e-33 144.1 128 53.9
Aqoxy6G01699 Aquilegia oxysepala HOM05D004561 ORTHO05D005315 1.1e-32 143.7 131 49.6
Eucgr.B03172 Eucalyptus grandis HOM05D004561 ORTHO05D005315 1.1e-32 143.7 124 54.8
Medtr4g094538 Medicago truncatula HOM05D004561 ORTHO05D005315 1.1e-32 143.7 126 53.2
Psat1g047920 Pisum sativum HOM05D004561 ORTHO05D005315 1.1e-32 143.7 126 54.0
FvH4_5g18940 Fragaria vesca HOM05D004561 ORTHO05D005315 1.9e-32 142.9 128 53.9
Glyma.08G081300 Glycine max HOM05D004561 ORTHO05D005315 1.9e-32 142.9 127 51.2
Lj4g0004659 Lotus japonicus HOM05D004561 ORTHO05D005315 3.3e-32 142.1 131 51.9
TPR.G30372 Trifolium pratense HOM05D004561 ORTHO05D005315 3.3e-32 142.1 126 54.0
Lj6g0005186 Lotus japonicus HOM05D004561 ORTHO05D005315 5.6e-32 141.4 126 53.2
arahy.Tifrunner.gnm1.ann1.3X42ZC Arachis hypogaea HOM05D004561 ORTHO05D005315 9.5e-32 140.6 131 53.4
Glyma.05G126500 Glycine max HOM05D004561 ORTHO05D005315 2.1e-31 139.4 147 46.9
Aa31LG10G12840 Aethionema arabicum HOM05D004561 ORTHO05D005315 2.8e-31 139.0 89 79.8
Hund26218 Selenicereus undatus HOM05D004561 ORTHO05D005315 3.6e-31 138.7 84 70.2
MD16G1270300 Malus domestica HOM05D004561 ORTHO05D005315 1.0e-30 137.1 85 70.6
unitig_744.g24647 Utricularia gibba HOM05D004561 ORTHO05D005315 1.8e-30 136.3 136 52.2
AUR62021469 Chenopodium quinoa HOM05D004561 ORTHO05D005315 2.3e-30 136.0 106 62.3
arahy.Tifrunner.gnm1.ann1.AX2CN5 Arachis hypogaea HOM05D004561 ORTHO05D005315 6.8e-30 134.4 135 51.9
RcHm_v2.0_Chr7g0203411 Rosa chinensis HOM05D004561 ORTHO05D005315 6.8e-30 134.4 101 57.4
BcaC07g40185 Brassica carinata HOM05D004561 ORTHO05D005315 8.9e-30 134.0 93 69.9
CDE04G2633 Ceratophyllum demersum HOM05D004561 ORTHO05D005315 1.2e-29 133.7 85 63.5
ATR0661G441 Amborella trichopoda HOM05D004561 ORTHO05D005315 1.7e-28 129.8 126 46.8
Hund26251 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.7e-28 129.8 93 64.5
VMungo0251G0557 Vigna mungo HOM05D004561 ORTHO05D005315 1.7e-28 129.8 84 63.1
FAN13G2292 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.9e-28 129.0 75 70.7
FAN18G3337 Fragaria x ananassa HOM05D004561 ORTHO05D005315 2.9e-28 129.0 75 70.7
HPP92_027560 Vanilla planifolia HOM05D004561 ORTHO05D005315 3.7e-28 128.6 127 45.7
Os04g0678800 Oryza sativa ssp. japonica HOM05D004561 ORTHO05D005315 1.8e-27 126.3 129 47.3
Zm00001eb066050 Zea mays HOM05D004561 ORTHO05D005315 4.1e-27 125.2 130 46.9
SHI05351 Sapria himalayana HOM05D004561 ORTHO05D005315 9.2e-27 124.0 93 59.1
Zm00001eb433850 Zea mays HOM05D004561 ORTHO05D005315 1.2e-26 123.6 126 45.2
DCAR_002722 Daucus carota HOM05D004561 ORTHO05D005315 3.9e-25 118.6 69 71.0
BcaC07g40276 Brassica carinata HOM05D004561 ORTHO05D005315 8.6e-25 117.5 96 58.3
A09p50910 Brassica napus HOM05D004561 ORTHO05D005315 1.9e-24 116.3 89 59.6
SalBow1G5912 Salvia bowleyana HOM05D004561 ORTHO05D005315 3.3e-24 115.5 68 72.1
BolC8t50963H Brassica oleracea HOM05D004561 ORTHO05D005315 9.5e-24 114.0 95 57.9
Phvul.002G198500 Phaseolus vulgaris HOM05D004561 ORTHO05D005315 1.1e-22 110.5 68 66.2
AagrBONN_evm.TU.Sc2ySwM_368.3407 Anthoceros agrestis HOM05D004561 ORTHO05D005315 6.4e-20 101.3 123 45.5
SalBow1G7315 Salvia bowleyana HOM05D004561 ORTHO05D005315 2.4e-19 99.4 84 54.8
SalBow1G6765 Salvia bowleyana HOM05D004561 ORTHO05D005315 4.6e-18 95.1 82 54.9
Mapoly0029s0047 Marchantia polymorpha HOM05D004561 ORTHO05D005315 6.0e-18 94.7 84 48.8
Cre06.g300100 Chlamydomonas reinhardtii HOM05D004561 ORTHO05D005315 2.3e-17 92.8 85 49.4
RcHm_v2.0_Chr7g0204241 Rosa chinensis HOM05D004561 ORTHO05D005315 1.6e-15 86.7 90 51.1
Cpa.g.c32558.1 Carica papaya HOM05D004561 ORTHO05D005315 2.8e-15 85.9 67 56.7
Pp3c13_19470 Physcomitrium patens HOM05D004561 ORTHO05D005315 2.8e-15 85.9 69 52.2
CSS0005948 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 8.1e-15 84.3 43 81.4
CSS0036958 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 8.1e-15 84.3 43 81.4
CSS0006634 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 4.0e-14 82.0 43 76.7
RcHm_v2.0_Chr7g0204201 Rosa chinensis HOM05D004561 ORTHO05D005315 4.0e-14 82.0 82 52.4
CSS0005045 Camellia sinensis var. sinensis HOM05D004561 ORTHO05D005315 6.8e-14 81.3 43 79.1
MCO09G807 Micromonas commoda HOM05D004561 ORTHO05D005315 4.4e-13 78.6 91 44.0
CBR_g12600 Chara braunii HOM05D005240 ORTHO05D006471 2.2e-12 76.3 156 32.7
Sopen11g009350 Solanum pennellii HOM05D004561 ORTHO05D005315 3.7e-12 75.5 48 62.5
FAN18G2677 Fragaria x ananassa HOM05D004561 ORTHO05D005315 6.4e-12 74.7 48 62.5
Hund02231 Selenicereus undatus HOM05D004561 ORTHO05D005315 1.9e-11 73.2 84 42.9
SHI05337 Sapria himalayana HOM05D004561 ORTHO05D005315 2.7e-10 69.3 91 40.7
AUR62002652 Chenopodium quinoa HOM05D004561 ORTHO05D005315 3.5e-10 68.9 88 40.9
PRCOL_00001899 Prasinoderma coloniale HOM05D004561 ORTHO05D005315 7.8e-10 67.8 79 39.2
SalBow1G4445 Salvia bowleyana HOM05D025598 ORTHO05D005315 3.9e-09 65.5 42 66.7
FvH4_5g18980 Fragaria vesca HOM05D004561 ORTHO05D005315 2.5e-08 62.8 58 46.6
TAR371G0964 Trochodendron aralioides HOM05D000762 ORTHO05D002234 1.1e-06 57.4 83 38.6


User provided reference genes

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