Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 7.4e-160 567.4 336 100.0
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 3.1e-97 359.4 346 69.1
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 2.0e-93 346.7 342 65.2
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 1.6e-85 320.5 348 61.8
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 5.2e-73 278.9 346 59.8
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 1.7e-71 273.9 363 56.2
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 2.3e-68 263.5 355 56.1
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 1.5e-67 260.8 352 55.7
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 3.6e-66 256.1 353 54.4
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 2.4e-65 253.4 349 55.9
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 4.4e-64 249.2 350 53.7
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 4.4e-64 249.2 350 53.7
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 9.9e-64 248.1 350 53.7
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 1.7e-63 247.3 345 52.5
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 2.9e-63 246.5 346 53.2
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 4.6e-61 239.2 335 51.9
C02p44970 Brassica napus HOM05D004305 ORTHO05D005159 1.7e-60 237.3 366 51.1
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 1.9e-59 233.8 335 51.6
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 4.3e-59 232.6 335 51.6
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 5.6e-59 232.3 335 51.3
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 3.4e-56 223.0 338 50.0
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 3.7e-50 203.0 285 54.4
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 5.8e-48 195.7 338 45.3
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 9.3e-46 188.3 269 54.6
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 1.8e-25 120.9 387 38.2
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 2.4e-25 120.6 398 37.2
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 2.4e-25 120.6 400 37.5
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 4.1e-25 119.8 405 34.3
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 4.1e-25 119.8 423 37.1
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 9.1e-25 118.6 387 36.7
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 1.5e-24 117.9 374 36.9
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 1.5e-24 117.9 374 36.9
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 1.3e-23 114.8 401 35.7
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 1.3e-23 114.8 389 35.7
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 2.5e-22 110.5 387 35.9
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 2.5e-22 110.5 387 35.9
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 5.5e-22 109.4 420 34.3
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 5.5e-22 109.4 385 35.6
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 7.2e-22 109.0 437 32.7
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 1.6e-21 107.8 428 34.6
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 1.6e-21 107.8 428 34.6
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 2.1e-21 107.5 405 36.0
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 4.7e-21 106.3 403 35.5
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 7.9e-21 105.5 437 32.5
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 3.0e-20 103.6 415 34.7
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 8.8e-20 102.1 413 34.1
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 8.8e-20 102.1 441 32.9
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 1.1e-19 101.7 417 33.3
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 1.5e-19 101.3 381 35.2
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 1.5e-19 101.3 416 32.7
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.0e-15 88.6 423 31.9
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 5.0e-15 86.3 201 38.3
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 3.2e-14 83.6 209 34.4
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 9.4e-14 82.0 194 37.1
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 1.2e-13 81.6 201 36.3
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 2.1e-13 80.9 191 35.1
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 2.1e-13 80.9 192 35.9
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 4.7e-13 79.7 198 37.4
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 2.3e-12 77.4 200 36.5
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 3.0e-12 77.0 197 37.6
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 5.2e-12 76.3 214 35.5
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 4.4e-11 73.2 180 38.3
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 5.7e-11 72.8 166 39.8
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 9.7e-11 72.0 181 34.8
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 1.7e-10 71.2 186 36.6
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 2.2e-10 70.9 166 36.7
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 2.8e-10 70.5 165 38.2
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 3.7e-10 70.1 205 32.2
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 6.3e-10 69.3 194 35.6
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 6.3e-10 69.3 168 37.5
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 2.4e-09 67.4 187 34.8
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 3.1e-09 67.0 171 36.8
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 4.1e-09 66.6 397 28.2
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 5.3e-09 66.2 235 33.2
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 1.2e-08 65.1 210 31.4
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 1.6e-08 64.7 190 32.1
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 3.5e-08 63.5 174 33.3
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 4.5e-08 63.2 166 38.0
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 4.5e-08 63.2 64 51.6
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 5.9e-08 62.8 207 30.4
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 5.9e-08 62.8 189 38.6
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 7.7e-08 62.4 186 34.4
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 7.7e-08 62.4 185 32.4
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 1.0e-07 62.0 67 49.3
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 1.0e-07 62.0 186 35.5
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 1.0e-07 62.0 174 36.2
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.0e-07 62.0 203 32.5
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 1.0e-07 62.0 370 28.9
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 1.0e-07 62.0 367 27.2
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 1.7e-07 61.2 56 60.7
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 1.7e-07 61.2 244 27.9
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.7e-07 61.2 188 37.2
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.7e-07 61.2 200 32.5
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 2.2e-07 60.8 200 32.5
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 2.9e-07 60.5 192 35.4
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 2.9e-07 60.5 171 35.1
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 2.9e-07 60.5 211 32.2
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 3.8e-07 60.1 370 28.1
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 6.5e-07 59.3 217 30.9
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 6.5e-07 59.3 202 33.7
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 6.5e-07 59.3 175 34.9
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 6.5e-07 59.3 62 53.2
Aqoxy1G01487 Aquilegia oxysepala HOM05D004305 ORTHO05D005159 8.5e-07 58.9 60 50.0
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 8.5e-07 58.9 238 29.4
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 8.5e-07 58.9 171 35.7
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 1.1e-06 58.5 176 34.7
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 1.1e-06 58.5 189 34.4
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 1.5e-06 58.2 380 27.6
unitig_748.g7348 Utricularia gibba HOM05D004305 ORTHO05D005159 1.5e-06 58.2 176 34.1
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 1.9e-06 57.8 205 33.7
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 2.5e-06 57.4 170 34.1
BolC7t43237H Brassica oleracea HOM05D004305 ORTHO05D005159 5.5e-06 56.2 64 59.4
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 5.5e-06 56.2 245 30.6
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 5.5e-06 56.2 179 33.0
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 7.2e-06 55.8 202 28.7


User provided reference genes

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