Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0404 Capsella rubella HOM05D005284 ORTHO05D006609 9.7e-197 689.9 331 100.0
Thhalv10000956m.g Eutrema salsugineum HOM05D005284 ORTHO05D006609 2.8e-167 592.0 337 85.2
CARHR178630 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.3e-164 583.2 327 85.6
BcaB07g30944 Brassica carinata HOM05D005284 ORTHO05D006609 3.5e-162 575.1 332 84.0
Sp2g09280 Schrenkiella parvula HOM05D005284 ORTHO05D006609 3.5e-162 575.1 331 83.7
C09p26950 Brassica napus HOM05D005284 ORTHO05D006609 6.6e-161 570.9 333 83.8
BolC9t55580H Brassica oleracea HOM05D005284 ORTHO05D006609 6.6e-161 570.9 333 83.8
BolC7t43252H Brassica oleracea HOM05D005284 ORTHO05D006609 5.2e-158 561.2 328 83.2
BraA06t27590Z Brassica rapa HOM05D005284 ORTHO05D006609 5.2e-158 561.2 331 82.5
A06p47190 Brassica napus HOM05D005284 ORTHO05D006609 6.8e-158 560.8 331 82.5
A09p21140 Brassica napus HOM05D005284 ORTHO05D006609 4.4e-157 558.1 336 81.5
AL8G15400 Arabidopsis lyrata HOM05D005284 ORTHO05D006609 5.0e-153 544.7 277 93.1
Aa31LG9G8740 Aethionema arabicum HOM05D005284 ORTHO05D006609 3.3e-152 542.0 331 80.1
BcaC04g21829 Brassica carinata HOM05D005284 ORTHO05D006609 7.5e-149 530.8 277 90.3
BcaC06g31615 Brassica carinata HOM05D005284 ORTHO05D006609 1.3e-148 530.0 275 90.5
BcaC06g34553 Brassica carinata HOM05D005284 ORTHO05D006609 2.2e-148 529.3 277 89.9
C07p27240 Brassica napus HOM05D005284 ORTHO05D006609 2.2e-148 529.3 277 89.9
BraA09t37720Z Brassica rapa HOM05D005284 ORTHO05D006609 6.0e-146 521.2 278 89.2
THA.LOC104812070 Tarenaya hassleriana HOM05D005284 ORTHO05D006609 2.0e-141 506.1 298 81.9
Gohir.D10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.4e-126 456.8 308 70.5
Gorai.011G006700 Gossypium raimondii HOM05D005284 ORTHO05D006609 3.1e-126 455.7 308 70.1
Gohir.A10G005900 Gossypium hirsutum HOM05D005284 ORTHO05D006609 1.5e-125 453.4 308 70.5
Cpa.g.sc489.2 Carica papaya HOM05D005284 ORTHO05D006609 2.6e-125 452.6 280 75.7
Duzib235G1425 Durio zibethinus HOM05D005284 ORTHO05D006609 5.8e-125 451.4 327 67.9
Thecc.06G009000 Theobroma cacao HOM05D005284 ORTHO05D006609 1.2e-122 443.7 312 70.5
Atru.chr10.695 Acer truncatum HOM05D005284 ORTHO05D006609 5.1e-121 438.3 284 73.9
TWI38G1381 Tripterygium wilfordii HOM05D005284 ORTHO05D006609 6.6e-121 438.0 294 71.8
AT5G44450 Arabidopsis thaliana HOM05D005284 ORTHO05D006609 4.3e-120 435.3 262 82.1
Ciclev10016195m.g Citrus clementina HOM05D005284 ORTHO05D006609 3.6e-119 432.2 281 72.2
CiPaw.09G147600 Carya illinoinensis HOM05D005284 ORTHO05D006609 4.0e-118 428.7 280 71.4
Potri.011G157500 Populus trichocarpa HOM05D005284 ORTHO05D006609 2.0e-117 426.4 280 73.2
CANSAT78G1346 Cannabis sativa HOM05D005284 ORTHO05D006609 7.6e-117 424.5 285 71.9
QL05p064527 Quercus lobata HOM05D005284 ORTHO05D006609 9.9e-117 424.1 277 71.5
Dinv04290 Davidia involucrata HOM05D005284 ORTHO05D006609 2.2e-116 422.9 280 71.8
Cfa000771 Carpinus fangiana HOM05D005284 ORTHO05D006609 3.2e-115 419.1 280 71.4
Eucgr.D01014 Eucalyptus grandis HOM05D005284 ORTHO05D006609 7.1e-115 417.9 308 65.6
FvH4_3g11170 Fragaria vesca HOM05D005284 ORTHO05D006609 1.6e-114 416.8 283 72.1
COL.COLO4_26880 Corchorus olitorius HOM05D005284 ORTHO05D006609 2.1e-114 416.4 342 62.3
Prupe.4G100600 Prunus persica HOM05D005284 ORTHO05D006609 2.1e-114 416.4 282 70.6
MD10G1243300 Malus domestica HOM05D005284 ORTHO05D006609 2.7e-114 416.0 297 67.7
Ah.01g003600 Amaranthus hybridus HOM05D005284 ORTHO05D006609 3.5e-114 415.6 282 68.4
RcHm_v2.0_Chr5g0018081 Rosa chinensis HOM05D005284 ORTHO05D006609 1.1e-112 410.6 283 70.3
TAR626G0222 Trochodendron aralioides HOM05D005284 ORTHO05D006609 1.1e-112 410.6 280 68.9
vmacro03466 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 1.5e-112 410.2 297 65.3
Lalb_Chr12g0208701 Lupinus albus HOM05D005284 ORTHO05D006609 3.3e-112 409.1 313 64.9
Rhsim13G0125000 Rhododendron simsii HOM05D005284 ORTHO05D006609 7.4e-112 407.9 280 68.9
Lsat_1_v5_gn_5_75320 Lactuca sativa HOM05D005284 ORTHO05D006609 1.3e-111 407.1 280 69.6
Actinidia29265 Actinidia chinensis HOM05D005284 ORTHO05D006609 1.6e-111 406.8 280 68.6
MD05G1265300 Malus domestica HOM05D005284 ORTHO05D006609 2.8e-111 406.0 282 68.4
Migut.M01924 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.4e-110 403.7 317 62.8
PSO541G1959 Papaver somniferum HOM05D005284 ORTHO05D006609 3.1e-110 402.5 283 68.6
PSO675G4367 Papaver somniferum HOM05D005284 ORTHO05D006609 3.1e-110 402.5 283 68.6
Lj4g0006881 Lotus japonicus HOM05D005284 ORTHO05D006609 6.9e-110 401.4 277 68.6
DCAR_000834 Daucus carota HOM05D005284 ORTHO05D006609 1.5e-109 400.2 281 68.7
EL10Ac9g22329 Beta vulgaris HOM05D005284 ORTHO05D006609 2.6e-109 399.4 280 67.9
CDE02G0074 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 2.9e-108 396.0 268 67.5
HanXRQChr12g0359761 Helianthus annuus HOM05D005284 ORTHO05D006609 2.9e-108 396.0 280 66.8
MELO3C007049.2 Cucumis melo HOM05D005284 ORTHO05D006609 4.9e-108 395.2 280 66.8
MSTRG.7559 Avicennia marina HOM05D005284 ORTHO05D006609 8.4e-108 394.4 282 65.2
Cc08_g07170 Coffea canephora HOM05D005284 ORTHO05D006609 8.4e-108 394.4 281 65.8
CsaV3_6G052590 Cucumis sativus L. HOM05D005284 ORTHO05D006609 8.4e-108 394.4 280 66.4
Sopen02g006280 Solanum pennellii HOM05D005284 ORTHO05D006609 1.1e-107 394.0 280 66.8
Medtr4g094452 Medicago truncatula HOM05D005284 ORTHO05D006609 2.5e-107 392.9 278 65.8
CDE05G2614 Ceratophyllum demersum HOM05D005284 ORTHO05D006609 3.2e-107 392.5 290 64.5
Sed0002797 Sechium edule HOM05D005284 ORTHO05D006609 3.2e-107 392.5 279 65.9
Nn7g37791 Nelumbo nucifera HOM05D005284 ORTHO05D006609 1.2e-106 390.6 280 68.9
Phvul.002G201500 Phaseolus vulgaris HOM05D005284 ORTHO05D006609 1.6e-106 390.2 277 66.4
Glyma.08G079300 Glycine max HOM05D005284 ORTHO05D006609 6.0e-106 388.3 279 66.3
CAN.G39.30 Capsicum annuum HOM05D005284 ORTHO05D006609 3.0e-105 386.0 280 64.6
VMungo0251G0080 Vigna mungo HOM05D005284 ORTHO05D006609 5.1e-105 385.2 278 66.5
Psat7g094280 Pisum sativum HOM05D005284 ORTHO05D006609 6.7e-105 384.8 278 64.7
Glyma.05G124100 Glycine max HOM05D005284 ORTHO05D006609 8.7e-105 384.4 280 65.4
Aqoxy1G01504 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 2.8e-103 379.4 284 63.0
Aqoxy1G01508 Aquilegia oxysepala HOM05D005284 ORTHO05D006609 2.8e-103 379.4 284 63.0
arahy.Tifrunner.gnm1.ann1.06Y4PY Arachis hypogaea HOM05D005284 ORTHO05D006609 3.7e-103 379.0 280 65.7
Ca_18306_v3 Cicer arietinum L. HOM05D005284 ORTHO05D006609 1.8e-102 376.7 293 63.1
Manes.14G126000 Manihot esculenta HOM05D005284 ORTHO05D006609 5.3e-102 375.2 243 73.3
ATR0763G041 Amborella trichopoda HOM05D005284 ORTHO05D006609 2.6e-101 372.9 278 64.4
Sabra11G0142700 Salix brachista HOM05D005284 ORTHO05D006609 2.9e-100 369.4 239 74.1
SalBow8G0467 Salvia bowleyana HOM05D005284 ORTHO05D006609 2.9e-100 369.4 321 57.6
ECA234G4512 Erigeron canadensis HOM05D005284 ORTHO05D006609 6.5e-100 368.2 262 67.2
Sc04g0004240 Simmondsia chinensis HOM05D005284 ORTHO05D006609 1.9e-99 366.7 236 75.0
SalBow3G1375 Salvia bowleyana HOM05D005284 ORTHO05D006609 4.6e-98 362.1 312 57.7
Nitab4.5_0000607g0120 Nicotiana tabacum HOM05D005284 ORTHO05D006609 3.3e-96 355.9 392 48.2
Lj2C336G9 Lonicera japonica HOM05D005284 ORTHO05D006609 7.4e-96 354.8 280 62.9
Oeu000506.1 Olea europaea HOM05D005284 ORTHO05D006609 1.3e-95 354.0 354 51.1
HPP92_000943 Vanilla planifolia HOM05D005284 ORTHO05D006609 4.8e-95 352.1 273 63.0
SEGI_24201 Sequoiadendron giganteum HOM05D005284 ORTHO05D006609 2.4e-94 349.7 283 59.4
Os03g0780900 Oryza sativa ssp. japonica HOM05D005284 ORTHO05D006609 6.9e-94 348.2 308 54.9
Nitab4.5_0000100g0010 Nicotiana tabacum HOM05D005284 ORTHO05D006609 3.4e-93 345.9 417 45.3
FAN16G1000 Fragaria x ananassa HOM05D005284 ORTHO05D006609 3.8e-92 342.4 282 61.7
MBI18_g27137_MAGBIO Magnolia biondii HOM05D005284 ORTHO05D006609 9.4e-91 337.8 322 53.1
FAN21G1306 Fragaria x ananassa HOM05D005284 ORTHO05D006609 1.6e-90 337.0 283 61.1
FAN25G2940 Fragaria x ananassa HOM05D005284 ORTHO05D006609 2.7e-90 336.3 279 61.6
Peaxi162Scf00155g00513 Petunia axillaris HOM05D005284 ORTHO05D006609 6.7e-89 331.6 314 55.1
TPR.G23781 Trifolium pratense HOM05D005284 ORTHO05D006609 2.0e-88 330.1 270 58.9
unitig_748.g7349 Utricularia gibba HOM05D005284 ORTHO05D006609 5.7e-88 328.6 289 58.1
SMO364G0300 Selaginella moellendorffii HOM05D005284 ORTHO05D006609 4.8e-87 325.5 256 59.8
SGA_v2.0_scaffold1G00293 Striga asiatica HOM05D006189 ORTHO05D007765 6.9e-86 321.6 237 64.6
Mapoly0083s0001 Marchantia polymorpha HOM05D005284 ORTHO05D006609 3.8e-76 289.3 302 50.7
AUR62042202 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.5e-75 287.3 228 59.6
PGR083G0243 Punica granatum HOM05D005284 ORTHO05D006609 7.2e-75 285.0 188 70.7
GSVIVG01021778001 Vitis vinifera HOM05D005284 ORTHO05D006609 3.6e-74 282.7 186 70.4
CBR_g19259 Chara braunii HOM05D005284 ORTHO05D006609 8.0e-74 281.6 268 51.9
Zm00001eb059610 Zea mays HOM05D005284 ORTHO05D006609 1.4e-73 280.8 304 47.7
ClCG01G025350 Citrullus lanatus HOM05D005284 ORTHO05D006609 3.7e-71 272.7 325 46.8
Solyc02g021700.4 Solanum lycopersicum HOM05D005284 ORTHO05D006609 8.2e-71 271.6 187 67.4
AUR62033057 Chenopodium quinoa HOM05D005284 ORTHO05D006609 1.1e-70 271.2 187 66.3
MCO11G684 Micromonas commoda HOM05D005284 ORTHO05D006609 2.2e-63 246.9 252 47.6
Dinv04294 Davidia involucrata HOM05D005284 ORTHO05D006609 1.5e-59 234.2 142 75.4
PRCOL_00002523 Prasinoderma coloniale HOM05D005284 ORTHO05D006609 9.5e-59 231.5 255 45.5
Thecc.06G010000 Theobroma cacao HOM05D005284 ORTHO05D006609 5.7e-56 222.2 191 59.7
AagrBONN_evm.TU.Sc2ySwM_344.3509 Anthoceros agrestis HOM05D005284 ORTHO05D006609 1.3e-55 221.1 214 53.3
Cre06.g274400 Chlamydomonas reinhardtii HOM05D005284 ORTHO05D006609 2.8e-55 219.9 254 44.1
CARHR114890 Cardamine hirsuta HOM05D005284 ORTHO05D006609 1.4e-41 174.5 91 87.9
Hma1.2p1_0721F.1_g208670 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 7.0e-38 162.2 117 65.0
Hma1.2p1_0721F.1_g208680 Hydrangea macrophylla HOM05D005284 ORTHO05D006609 1.6e-37 161.0 114 65.8
Aa31LG2G17800 Aethionema arabicum HOM05D005284 ORTHO05D006609 9.5e-35 151.8 86 79.1
Thecc.06G009200 Theobroma cacao HOM05D005284 ORTHO05D006609 3.2e-30 136.7 112 60.7
Thecc.06G009800 Theobroma cacao HOM05D005284 ORTHO05D006609 2.3e-28 130.6 95 67.4
vmacro21870 Vaccinium macrocarpon HOM05D005284 ORTHO05D006609 3.9e-28 129.8 90 66.7
Haze_05942 Corylus avellana HOM05D005284 ORTHO05D006609 3.3e-27 126.7 120 52.5
Cfa017779 Carpinus fangiana HOM05D005284 ORTHO05D006609 1.4e-25 121.3 97 58.8
Thecc.06G009400 Theobroma cacao HOM05D005284 ORTHO05D006609 1.8e-25 120.9 111 56.8
PGSC0003DMG400009806 Solanum tuberosum HOM05D005284 ORTHO05D006609 1.2e-24 118.2 94 57.4
BcaB07g30524 Brassica carinata HOM05D005284 ORTHO05D006609 4.4e-24 116.3 64 87.5
GSVIVG01037925001 Vitis vinifera HOM05D005284 ORTHO05D006609 5.8e-24 115.9 75 72.0
Pp3c22_8670 Physcomitrium patens HOM05D005284 ORTHO05D006609 7.1e-22 109.0 112 49.1
Dinv09223 Davidia involucrata HOM05D005284 ORTHO05D006609 2.7e-21 107.1 94 56.4
Dinv23919 Davidia involucrata HOM05D005284 ORTHO05D006609 5.1e-20 102.8 61 73.8
Sabra16G0312400 Salix brachista HOM05D005284 ORTHO05D006609 7.3e-19 99.0 62 71.0
CSS0000752 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 2.1e-18 97.4 51 84.3
Lalb_Chr13g0291531 Lupinus albus HOM05D005284 ORTHO05D006609 2.8e-18 97.1 100 48.0
PGSC0003DMG400015105 Solanum tuberosum HOM05D005284 ORTHO05D006609 8.1e-18 95.5 49 77.6
CSS0004293 Camellia sinensis var. sinensis HOM05D005284 ORTHO05D006609 5.1e-12 76.3 38 81.6
Nitab4.5_0000637g0040 Nicotiana tabacum HOM05D005284 ORTHO05D006609 4.3e-11 73.2 49 67.3
Nitab4.5_0001154g0100 Nicotiana tabacum HOM05D005284 ORTHO05D006609 1.6e-10 71.2 46 67.4
Glyma.04G136150 Glycine max HOM05D005284 ORTHO05D006609 2.1e-10 70.9 35 77.1
Migut.D00154 Erythranthe guttata HOM05D005284 ORTHO05D006609 1.4e-09 68.2 65 53.8
A07p10120 Brassica napus HOM05D005284 ORTHO05D024396 9.0e-09 65.5 33 75.8
BraA07t28805Z Brassica rapa HOM05D005284 ORTHO05D024396 9.0e-09 65.5 33 75.8
Prupe.4G100800 Prunus persica HOM05D005284 ORTHO05D006609 8.4e-07 58.9 55 43.6


User provided reference genes

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