Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0360 Capsella rubella HOM05D002102 ORTHO05D004119 5.8e-179 630.9 361 100.0
Thhalv10000939m.g Eutrema salsugineum HOM05D002102 ORTHO05D004119 1.3e-146 523.5 361 84.5
Sp2g09470 Schrenkiella parvula HOM05D002102 ORTHO05D004119 3.7e-141 505.4 358 82.7
BraA06t27575Z Brassica rapa HOM05D002102 ORTHO05D004119 3.1e-140 502.3 364 82.1
A06p47020 Brassica napus HOM05D002102 ORTHO05D004119 1.2e-139 500.4 365 82.2
C07p27550 Brassica napus HOM05D002102 ORTHO05D004119 2.7e-139 499.2 364 81.9
BolC7t43286H Brassica oleracea HOM05D002102 ORTHO05D004119 2.7e-139 499.2 364 81.9
AT5G44660 Arabidopsis thaliana HOM05D002102 ORTHO05D004119 7.7e-139 497.7 435 68.0
BcaC06g34526 Brassica carinata HOM05D002102 ORTHO05D004119 3.8e-138 495.4 365 81.1
CARHR178240 Cardamine hirsuta HOM05D002102 ORTHO05D004119 2.7e-136 489.2 364 82.4
BcaC06g31599 Brassica carinata HOM05D002102 ORTHO05D004119 4.0e-135 485.3 363 80.2
AL8G14890 Arabidopsis lyrata HOM05D002102 ORTHO05D004119 6.8e-135 484.6 517 58.8
BcaB07g30507 Brassica carinata HOM05D002102 ORTHO05D004119 1.3e-125 453.8 362 75.4
BraA02t07888Z Brassica rapa HOM05D002102 ORTHO05D004119 9.5e-121 437.6 362 74.3
A02p28520 Brassica napus HOM05D002102 ORTHO05D004119 2.8e-120 436.0 362 74.3
BcaC03g16685 Brassica carinata HOM05D002102 ORTHO05D004119 2.9e-117 426.0 362 73.5
BolC2t10555H Brassica oleracea HOM05D002102 ORTHO05D004119 9.2e-116 421.0 362 72.7
Aa31LG9G8520 Aethionema arabicum HOM05D002102 ORTHO05D008242 3.9e-114 415.6 374 71.4
THA.LOC104811927 Tarenaya hassleriana HOM05D002102 ORTHO05D004119 5.2e-87 325.5 402 51.7
C02p45250 Brassica napus HOM05D002102 ORTHO05D004119 3.2e-84 316.2 364 59.6
Aa31LG6G2610 Aethionema arabicum HOM05D002102 ORTHO05D004119 2.6e-78 296.6 416 48.3
Thhalv10027261m.g Eutrema salsugineum HOM05D002102 ORTHO05D004119 4.2e-76 289.3 429 48.3
AT4G20190 Arabidopsis thaliana HOM05D002102 ORTHO05D004119 3.6e-72 276.2 418 48.6
BcaC01g00659 Brassica carinata HOM05D002102 ORTHO05D004119 8.1e-72 275.0 409 49.1
C03p82830 Brassica napus HOM05D002102 ORTHO05D004119 8.1e-72 275.0 409 49.1
BolC3t20564H Brassica oleracea HOM05D002102 ORTHO05D004119 8.1e-72 275.0 409 49.1
A08p14680 Brassica napus HOM05D002102 ORTHO05D004119 1.8e-71 273.9 409 48.9
BraA08t33455Z Brassica rapa HOM05D002102 ORTHO05D004119 1.8e-71 273.9 409 48.9
CARHR227010 Cardamine hirsuta HOM05D002102 ORTHO05D004119 9.0e-71 271.6 421 47.3
BcaNung03713 Brassica carinata HOM05D002102 ORTHO05D004119 1.3e-69 267.7 423 46.8
BraA01t01135Z Brassica rapa HOM05D002102 ORTHO05D004119 6.4e-69 265.4 420 47.9
THA.LOC104813354 Tarenaya hassleriana HOM05D002102 ORTHO05D004119 7.1e-68 261.9 388 47.7
BcaB03g11661 Brassica carinata HOM05D002102 ORTHO05D004119 1.2e-67 261.2 415 48.0
BcaNung03712 Brassica carinata HOM05D002102 ORTHO05D004119 2.1e-67 260.4 437 45.3
A01p11930 Brassica napus HOM05D002102 ORTHO05D004119 4.6e-67 259.2 427 47.1
AL7G33650 Arabidopsis lyrata HOM05D002102 ORTHO05D004119 1.8e-66 257.3 420 45.7
Carub.0007s2095 Capsella rubella HOM05D002102 ORTHO05D004119 5.1e-66 255.8 425 45.9
BcaC09g51330 Brassica carinata HOM05D002102 ORTHO05D004119 1.1e-65 254.6 416 46.4
BolC1t01381H Brassica oleracea HOM05D002102 ORTHO05D004119 1.1e-65 254.6 416 46.4
C01p14170 Brassica napus HOM05D002102 ORTHO05D004119 8.1e-64 248.4 422 45.5
Sp7g18610 Schrenkiella parvula HOM05D002102 ORTHO05D004119 1.5e-62 244.2 420 42.6
Thecc.01G106700 Theobroma cacao HOM05D002102 ORTHO05D004119 1.8e-39 167.5 426 37.6
COL.COLO4_03689 Corchorus olitorius HOM05D002102 ORTHO05D004119 8.5e-37 158.7 387 38.5
TAR629G0218 Trochodendron aralioides HOM05D002102 ORTHO05D004119 9.4e-36 155.2 377 36.6
Cfa001163 Carpinus fangiana HOM05D002102 ORTHO05D004119 1.4e-34 151.4 377 36.9
CsaV3_1G009970 Cucumis sativus L. HOM05D002102 ORTHO05D004119 8.8e-34 148.7 361 37.4
Manes.16G059800 Manihot esculenta HOM05D002102 ORTHO05D004119 8.8e-34 148.7 387 35.9
Sabra01G0052600 Salix brachista HOM05D002102 ORTHO05D004119 8.8e-34 148.7 378 34.7
ClCG03G004080 Citrullus lanatus HOM05D002102 ORTHO05D004119 4.4e-33 146.4 359 35.9
MELO3C002390.2 Cucumis melo HOM05D002102 ORTHO05D004119 5.7e-33 146.0 360 37.8
TWI63G0772 Tripterygium wilfordii HOM05D002102 ORTHO05D004119 9.7e-33 145.2 377 37.4
CiPaw.09G140500 Carya illinoinensis HOM05D002102 ORTHO05D004119 1.3e-32 144.8 377 34.7
Gohir.A02G132600 Gossypium hirsutum HOM05D002102 ORTHO05D004119 4.8e-32 142.9 393 36.1
HanXRQChr02g0036451 Helianthus annuus HOM05D002102 ORTHO05D004119 4.8e-32 142.9 384 33.1
Gohir.D03G044000 Gossypium hirsutum HOM05D002102 ORTHO05D004119 8.2e-32 142.1 393 35.9
Cpa.g.sc1291.1 Carica papaya HOM05D002102 ORTHO05D004119 1.1e-31 141.7 361 36.8
Potri.001G074300 Populus trichocarpa HOM05D002102 ORTHO05D004119 1.1e-31 141.7 382 34.6
Sc17g0004360 Simmondsia chinensis HOM05D002102 ORTHO05D004119 1.1e-31 141.7 383 36.0
Gorai.003G045000 Gossypium raimondii HOM05D002102 ORTHO05D004119 1.4e-31 141.4 361 38.0
Ciclev10015737m.g Citrus clementina HOM05D002102 ORTHO05D004119 2.0e-30 137.5 387 33.9
Sed0008960 Sechium edule HOM05D002102 ORTHO05D004119 2.6e-30 137.1 355 36.6
Nitab4.5_0007687g0030 Nicotiana tabacum HOM05D002102 ORTHO05D004119 3.5e-30 136.7 398 33.7
Potri.003G156700 Populus trichocarpa HOM05D002102 ORTHO05D004119 4.5e-30 136.3 379 34.0
DCAR_001256 Daucus carota HOM05D002102 ORTHO05D008242 5.9e-30 136.0 375 34.4
TWI15G0700 Tripterygium wilfordii HOM05D002102 ORTHO05D004119 5.9e-30 136.0 371 35.3
QL11p010813 Quercus lobata HOM05D002102 ORTHO05D004119 7.7e-30 135.6 368 33.7
Aa31LG6G12270 Aethionema arabicum HOM05D002102 ORTHO05D004119 5.0e-29 132.9 320 35.0
BcaB06g28826 Brassica carinata HOM05D002102 ORTHO05D004119 5.0e-29 132.9 194 44.3
Glyma.15G155100 Glycine max HOM05D002102 ORTHO05D004119 5.0e-29 132.9 360 34.7
Hma1.2p1_0166F.1_g073520 Hydrangea macrophylla HOM05D002102 ORTHO05D004119 5.0e-29 132.9 229 43.7
RcHm_v2.0_Chr5g0021811 Rosa chinensis HOM05D002102 ORTHO05D004119 6.5e-29 132.5 378 36.0
Lsat_1_v5_gn_9_100101 Lactuca sativa HOM05D002102 ORTHO05D004119 1.9e-28 131.0 369 33.1
Nitab4.5_0001815g0140 Nicotiana tabacum HOM05D002102 ORTHO05D004119 1.9e-28 131.0 396 33.3
BcaC02g07749 Brassica carinata HOM05D002102 ORTHO05D004119 4.2e-28 129.8 311 34.7
FAN21G2948 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.6e-27 127.9 369 33.3
BolC4t27882H Brassica oleracea HOM05D002102 ORTHO05D004119 2.1e-27 127.5 308 34.4
CARHR129060 Cardamine hirsuta HOM05D002102 ORTHO05D004119 2.1e-27 127.5 355 31.5
Thhalv10017016m.g Eutrema salsugineum HOM05D002102 ORTHO05D004119 2.1e-27 127.5 357 32.2
Sp1g26750 Schrenkiella parvula HOM05D002102 ORTHO05D004119 3.6e-27 126.7 327 34.9
AL1G45140 Arabidopsis lyrata HOM05D002102 ORTHO05D004119 8.0e-27 125.6 310 33.9
C04p64060 Brassica napus HOM05D002102 ORTHO05D004119 8.0e-27 125.6 308 33.4
Cc09_g04630 Coffea canephora HOM05D002102 ORTHO05D004119 8.0e-27 125.6 392 30.6
FAN11G2372 Fragaria x ananassa HOM05D002102 ORTHO05D008242 1.0e-26 125.2 369 33.6
MD05G1242700 Malus domestica HOM05D002102 ORTHO05D004119 1.0e-26 125.2 348 32.8
ECA238G3437 Erigeron canadensis HOM05D002102 ORTHO05D004119 1.4e-26 124.8 308 35.1
AT1G30850 Arabidopsis thaliana HOM05D002102 ORTHO05D004119 3.0e-26 123.6 326 33.4
BcaB02g09499 Brassica carinata HOM05D002102 ORTHO05D004119 4.0e-26 123.2 308 32.8
FvH4_3g13340 Fragaria vesca HOM05D002102 ORTHO05D004119 4.0e-26 123.2 369 33.3
Glyma.09G047700 Glycine max HOM05D002102 ORTHO05D004119 4.0e-26 123.2 387 33.9
BcaB06g28821 Brassica carinata HOM05D002102 ORTHO05D004119 5.2e-26 122.9 206 40.8
Eucgr.E04329 Eucalyptus grandis HOM05D002102 ORTHO05D004119 5.2e-26 122.9 336 34.2
PSO675G5300 Papaver somniferum HOM05D002102 ORTHO05D004119 5.2e-26 122.9 213 42.7
Prupe.4G120700 Prunus persica HOM05D002102 ORTHO05D004119 5.2e-26 122.9 363 33.3
A04p26640 Brassica napus HOM05D002102 ORTHO05D004119 8.8e-26 122.1 308 33.1
BraA04t18169Z Brassica rapa HOM05D002102 ORTHO05D004119 1.5e-25 121.3 308 33.1
MD10G1224500 Malus domestica HOM05D002102 ORTHO05D004119 1.5e-25 121.3 346 31.8
Aqoxy1G01356 Aquilegia oxysepala HOM05D002102 ORTHO05D004119 2.0e-25 120.9 372 32.5
Thhalv10008294m.g Eutrema salsugineum HOM05D002102 ORTHO05D004119 2.6e-25 120.6 327 34.6
FAN25G3128 Fragaria x ananassa HOM05D002102 ORTHO05D008242 2.6e-25 120.6 369 32.8
Lalb_Chr05g0229071 Lupinus albus HOM05D002102 ORTHO05D004119 2.6e-25 120.6 341 35.8
BcaC02g11574 Brassica carinata HOM05D002102 ORTHO05D004119 3.3e-25 120.2 308 34.1
C04p13880 Brassica napus HOM05D002102 ORTHO05D004119 3.3e-25 120.2 308 34.1
BolC4t22976H Brassica oleracea HOM05D002102 ORTHO05D004119 3.3e-25 120.2 308 34.1
PSO541G6086 Papaver somniferum HOM05D002102 ORTHO05D004119 3.3e-25 120.2 213 42.3
Aa31LG10G6430 Aethionema arabicum HOM05D002102 ORTHO05D004119 4.4e-25 119.8 318 32.4
A09p35310 Brassica napus HOM05D002102 ORTHO05D004119 4.4e-25 119.8 323 32.5
THA.LOC104798573 Tarenaya hassleriana HOM05D002102 ORTHO05D004119 4.4e-25 119.8 333 34.2
CANSAT35G1778 Cannabis sativa HOM05D002102 ORTHO05D004119 5.7e-25 119.4 398 32.9
FAN16G2960 Fragaria x ananassa HOM05D002102 ORTHO05D008242 9.7e-25 118.6 369 32.8
Solyc02g082150.1 Solanum lycopersicum HOM05D002102 ORTHO05D004119 9.7e-25 118.6 376 32.7
HanXRQChr14g0439021 Helianthus annuus HOM05D002102 ORTHO05D004119 1.3e-24 118.2 350 32.0
Sopen02g026810 Solanum pennellii HOM05D002102 ORTHO05D004119 1.3e-24 118.2 376 32.7
AT2G34910 Arabidopsis thaliana HOM05D002102 ORTHO05D004119 1.7e-24 117.9 309 33.7
BcaB07g32751 Brassica carinata HOM05D002102 ORTHO05D004119 1.7e-24 117.9 316 34.2
Carub.0001s2919 Capsella rubella HOM05D002102 ORTHO05D004119 1.7e-24 117.9 323 32.8
A05p10770 Brassica napus HOM05D002102 ORTHO05D004119 2.2e-24 117.5 302 33.4
BraA05t20021Z Brassica rapa HOM05D002102 ORTHO05D004119 2.2e-24 117.5 302 33.4
BraA09t39060Z Brassica rapa HOM05D002102 ORTHO05D004119 2.2e-24 117.5 323 32.5
Sp4g17210 Schrenkiella parvula HOM05D002102 ORTHO05D004119 2.8e-24 117.1 300 32.0
Carub.0004s1659 Capsella rubella HOM05D002102 ORTHO05D004119 3.7e-24 116.7 299 34.1
CARHR030340 Cardamine hirsuta HOM05D002102 ORTHO05D004119 3.7e-24 116.7 308 34.1
Oeu025642.1 Olea europaea HOM05D002102 ORTHO05D004119 4.8e-24 116.3 308 35.1
AL4G30920 Arabidopsis lyrata HOM05D002102 ORTHO05D004119 6.3e-24 115.9 300 34.0
VMungo0251G3352 Vigna mungo HOM05D002102 ORTHO05D004119 6.3e-24 115.9 308 34.4
Ca_02410_v3 Cicer arietinum L. HOM05D002102 ORTHO05D004119 8.2e-24 115.5 367 33.5
BcaC05g27123 Brassica carinata HOM05D002102 ORTHO05D004119 1.1e-23 115.2 323 32.5
C05p30080 Brassica napus HOM05D002102 ORTHO05D004119 1.1e-23 115.2 323 32.5
BolC5t31744H Brassica oleracea HOM05D002102 ORTHO05D004119 1.1e-23 115.2 323 32.5
PGSC0003DMG400013657 Solanum tuberosum HOM05D002102 ORTHO05D004119 1.4e-23 114.8 333 33.0
Lsat_1_v5_gn_2_59800 Lactuca sativa HOM05D002102 ORTHO05D004119 1.8e-23 114.4 338 33.1
MBI02_g17885_MAGBIO Magnolia biondii HOM05D002102 ORTHO05D004119 1.8e-23 114.4 364 31.3
DCAR_004361 Daucus carota HOM05D002102 ORTHO05D004119 2.4e-23 114.0 335 35.2
Peaxi162Scf00313g00049 Petunia axillaris HOM05D002102 ORTHO05D004119 2.4e-23 114.0 319 32.6
PGSC0003DMG400011261 Solanum tuberosum HOM05D002102 ORTHO05D004119 2.4e-23 114.0 311 31.5
VMungo1309G0754 Vigna mungo HOM05D002102 ORTHO05D004119 2.4e-23 114.0 387 31.5
Phvul.003G275300 Phaseolus vulgaris HOM05D002102 ORTHO05D004119 3.1e-23 113.6 309 35.0
CAN.G809.14 Capsicum annuum HOM05D002102 ORTHO05D004119 9.1e-23 112.1 352 31.5
Solyc10g005190.1 Solanum lycopersicum HOM05D002102 ORTHO05D004119 1.2e-22 111.7 310 33.2
ECA246G4308 Erigeron canadensis HOM05D002102 ORTHO05D004119 1.6e-22 111.3 314 33.1
Nitab4.5_0012748g0010 Nicotiana tabacum HOM05D002102 ORTHO05D004119 3.5e-22 110.2 335 29.0
Phvul.009G245100 Phaseolus vulgaris HOM05D002102 ORTHO05D004119 3.5e-22 110.2 369 32.0
THA.LOC104814329 Tarenaya hassleriana HOM05D002102 ORTHO05D004119 4.5e-22 109.8 336 34.2
Psat1g152040 Pisum sativum HOM05D002102 ORTHO05D004119 5.9e-22 109.4 374 31.6
Medtr8g070690 Medicago truncatula HOM05D002102 ORTHO05D004119 7.7e-22 109.0 316 34.2
Nitab4.5_0001299g0100 Nicotiana tabacum HOM05D002102 ORTHO05D008242 3.8e-21 106.7 367 28.6
Sopen10g001180 Solanum pennellii HOM05D002102 ORTHO05D004119 3.8e-21 106.7 313 32.6
Lalb_Chr20g0114391 Lupinus albus HOM05D002102 ORTHO05D004119 5.0e-21 106.3 361 31.3
PGR042G1552 Punica granatum HOM05D002102 ORTHO05D004119 6.5e-21 105.9 363 33.1
TPR.G28833 Trifolium pratense HOM05D002102 ORTHO05D004119 1.1e-20 105.1 376 31.1
Psat0s2609g0080 Pisum sativum HOM05D002102 ORTHO05D004119 1.5e-20 104.8 313 33.2
Medtr2g437600 Medicago truncatula HOM05D002102 ORTHO05D004119 2.5e-20 104.0 364 30.8
Ca_22533_v3 Cicer arietinum L. HOM05D002102 ORTHO05D004119 3.2e-20 103.6 227 37.0
Haze_05200 Corylus avellana HOM05D002102 ORTHO05D004119 3.2e-20 103.6 252 38.9
TPR.G19830 Trifolium pratense HOM05D002102 ORTHO05D004119 5.5e-20 102.8 309 33.7
Migut.M02035 Erythranthe guttata HOM05D002102 ORTHO05D004119 7.2e-20 102.4 222 36.9
Dinv17885 Davidia involucrata HOM05D002102 ORTHO05D008242 1.6e-19 101.3 393 30.0
Lalb_Chr18g0051891 Lupinus albus HOM05D002102 ORTHO05D004119 2.1e-19 100.9 361 32.7
Cfa001162 Carpinus fangiana HOM05D002102 ORTHO05D004119 4.7e-19 99.8 241 39.4
Haze_05189 Corylus avellana HOM05D002102 ORTHO05D004119 4.7e-19 99.8 328 31.1
HPP92_015983 Vanilla planifolia HOM05D002102 ORTHO05D004119 1.0e-18 98.6 322 34.2
Lj6g0016862 Lotus japonicus HOM05D002102 ORTHO05D004119 1.4e-18 98.2 371 32.6
Lj4g0021437 Lotus japonicus HOM05D002102 ORTHO05D004119 5.2e-18 96.3 361 30.5
Glyma.16G094200 Glycine max HOM05D002102 ORTHO05D004119 6.8e-18 95.9 333 30.9
TPR.G749 Trifolium pratense HOM05D002102 ORTHO05D004119 8.8e-18 95.5 198 37.9
Peaxi162Scf00036g00224 Petunia axillaris HOM05D002102 ORTHO05D004119 1.5e-17 94.7 165 42.4
arahy.Tifrunner.gnm1.ann1.K04KZH Arachis hypogaea HOM05D002102 ORTHO05D004119 2.6e-17 94.0 388 29.9
A03p19350 Brassica napus HOM05D002102 ORTHO05D004119 1.4e-15 88.2 287 28.9
Actinidia34699 Actinidia chinensis HOM05D002102 ORTHO05D004119 3.1e-15 87.0 340 29.4
BraA03t11191Z Brassica rapa HOM05D002102 ORTHO05D004119 4.1e-15 86.7 318 28.3
SGA_v2.0_scaffold423G51452 Striga asiatica HOM05D002102 ORTHO05D004119 7.0e-15 85.9 387 29.5
arahy.Tifrunner.gnm1.ann1.G5LJZZ Arachis hypogaea HOM05D002102 ORTHO05D004119 1.6e-14 84.7 385 29.1
Zm00001eb385230 Zea mays HOM05D002102 ORTHO05D004119 2.0e-14 84.3 344 29.7
EL10Ac4g09794 Beta vulgaris HOM05D002102 ORTHO05D004119 2.3e-13 80.9 334 28.7
Os06g0574000 Oryza sativa ssp. japonica HOM05D002102 ORTHO05D004119 7.2e-12 75.9 343 29.7
BcaB03g13811 Brassica carinata HOM05D002102 ORTHO05D004119 8.0e-11 72.4 298 31.5
BcaC07g37800 Brassica carinata HOM05D002102 ORTHO05D004119 8.0e-11 72.4 271 29.5
BolC8t48191H Brassica oleracea HOM05D002102 ORTHO05D004119 8.0e-11 72.4 271 29.5
A07p09590 Brassica napus HOM05D002102 ORTHO05D004119 1.0e-10 72.0 300 30.7
BraA07t28753Z Brassica rapa HOM05D002102 ORTHO05D004119 1.0e-10 72.0 300 30.7
ATR0602G086 Amborella trichopoda HOM05D002102 ORTHO05D004119 4.0e-10 70.1 191 33.0
C07p14770 Brassica napus HOM05D002102 ORTHO05D004119 4.0e-10 70.1 300 30.7
BolC7t41979H Brassica oleracea HOM05D002102 ORTHO05D004119 4.0e-10 70.1 300 30.7
BraA08t33092Z Brassica rapa HOM05D002102 ORTHO05D004119 1.5e-09 68.2 249 30.1
AUR62007001 Chenopodium quinoa HOM05D002102 ORTHO05D004119 2.6e-09 67.4 334 29.0
AUR62000648 Chenopodium quinoa HOM05D002102 ORTHO05D004119 9.8e-09 65.5 275 29.1
TPR.G11093 Trifolium pratense HOM05D002102 ORTHO05D004119 9.8e-09 65.5 120 42.5
BcaB04g18204 Brassica carinata HOM05D002102 ORTHO05D004119 1.3e-08 65.1 278 29.1
A08p10980 Brassica napus HOM05D002102 ORTHO05D004119 2.8e-08 63.9 270 28.9
Cfa001161 Carpinus fangiana HOM05D002102 ORTHO05D004119 4.9e-08 63.2 93 54.8
Glyma.05G192200 Glycine max HOM05D002102 ORTHO05D029775 5.9e-06 56.2 151 29.1


User provided reference genes

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