Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0357 Capsella rubella HOM05D001163 ORTHO05D015253 0.0e+00 1298.1 679 100.0
AT5G44690 Arabidopsis thaliana HOM05D001163 ORTHO05D015253 8.9e-213 744.2 681 65.6
AL8G14850 Arabidopsis lyrata HOM05D001163 ORTHO05D015253 8.4e-179 631.3 646 60.1
BolC2t10557H Brassica oleracea HOM05D001163 ORTHO05D015253 3.9e-107 393.3 719 41.4
A02p28530 Brassica napus HOM05D000853 ORTHO05D015253 5.0e-107 392.9 718 41.6
BraA02t07889Z Brassica rapa HOM05D000853 ORTHO05D015253 6.6e-107 392.5 718 41.6
C02p45260 Brassica napus HOM05D000853 ORTHO05D015253 5.2e-104 382.9 719 40.9
BcaB07g30503 Brassica carinata HOM05D001163 ORTHO05D015253 5.8e-103 379.4 681 41.9
Sp2g09500 Schrenkiella parvula HOM05D001163 ORTHO05D015253 1.4e-64 251.9 651 33.8
CARHR226990 Cardamine hirsuta HOM05D001163 ORTHO05D014764 2.8e-49 201.1 879 28.7
Aa31LG9G8480 Aethionema arabicum HOM05D053517 ORTHO05D015253 5.7e-42 176.8 623 32.6
THA.LOC104811913 Tarenaya hassleriana HOM05D001163 ORTHO05D006243 7.4e-42 176.4 826 28.8
AT4G20160 Arabidopsis thaliana HOM05D001163 ORTHO05D014764 9.7e-42 176.0 1014 27.1
Sp7g18590 Schrenkiella parvula HOM05D001163 ORTHO05D014764 6.3e-41 173.3 985 28.2
BolC1t01379H Brassica oleracea HOM05D001163 ORTHO05D014764 2.6e-39 167.9 988 27.2
C01p14150 Brassica napus HOM05D001163 ORTHO05D014764 2.9e-38 164.5 991 26.7
BcaC09g51332 Brassica carinata HOM05D001163 ORTHO05D014764 1.4e-37 162.2 991 26.8
Carub.0007s2097 Capsella rubella HOM05D001163 ORTHO05D014764 4.2e-37 160.6 733 30.0
BcaC03g16688 Brassica carinata HOM05D001163 ORTHO05D015253 2.6e-31 141.4 232 44.4
Sp1g26760 Schrenkiella parvula HOM05D001163 ORTHO05D006243 1.4e-29 135.6 570 28.4
Thhalv10006896m.g Eutrema salsugineum HOM05D001163 ORTHO05D006243 1.9e-29 135.2 590 27.8
AL1G45150 Arabidopsis lyrata HOM05D001163 ORTHO05D006243 2.5e-29 134.8 685 27.4
A09p35290 Brassica napus HOM05D001163 ORTHO05D006243 2.7e-28 131.3 572 28.7
BraA01t01133Z Brassica rapa HOM05D001163 ORTHO05D014764 4.7e-28 130.6 1014 24.9
BcaB07g32752 Brassica carinata HOM05D001163 ORTHO05D006243 6.1e-28 130.2 543 28.5
Thhalv10024247m.g Eutrema salsugineum HOM05D001163 ORTHO05D014764 3.0e-27 127.9 1004 26.3
A01p11910 Brassica napus HOM05D001163 ORTHO05D014764 3.9e-27 127.5 1013 24.8
Carub.0004s1660 Capsella rubella HOM05D001163 ORTHO05D006243 4.8e-25 120.6 574 27.9
Sp4g17220 Schrenkiella parvula HOM05D001163 ORTHO05D006243 4.8e-25 120.6 690 26.8
AT1G30860 Arabidopsis thaliana HOM05D001163 ORTHO05D006243 6.3e-25 120.2 690 26.7
Carub.0001s2920 Capsella rubella HOM05D001163 ORTHO05D006243 1.4e-24 119.0 553 28.2
C04p13870 Brassica napus HOM05D001163 ORTHO05D006243 2.4e-24 118.2 694 26.2
CARHR030350 Cardamine hirsuta HOM05D001163 ORTHO05D006243 3.1e-24 117.9 567 26.1
BolC4t22975H Brassica oleracea HOM05D001163 ORTHO05D006243 5.3e-24 117.1 694 26.4
Thhalv10016344m.g Eutrema salsugineum HOM05D001163 ORTHO05D006243 5.3e-24 117.1 650 27.4
BraA09t39058Z Brassica rapa HOM05D001163 ORTHO05D006243 7.0e-24 116.7 551 26.9
CARHR129070 Cardamine hirsuta HOM05D001163 ORTHO05D006243 7.0e-24 116.7 635 26.5
BcaC05g27124 Brassica carinata HOM05D001163 ORTHO05D006243 1.2e-23 115.9 579 25.7
BcaNung03710 Brassica carinata HOM05D001163 ORTHO05D014764 1.2e-23 115.9 1017 25.6
C05p30090 Brassica napus HOM05D001163 ORTHO05D006243 1.2e-23 115.9 579 25.7
BolC5t31745H Brassica oleracea HOM05D001163 ORTHO05D006243 1.2e-23 115.9 579 25.7
BcaC07g37799 Brassica carinata HOM05D001163 ORTHO05D006243 1.6e-23 115.5 560 28.0
BolC8t48190H Brassica oleracea HOM05D001163 ORTHO05D006243 1.6e-23 115.5 560 28.0
Aa31LG6G12280 Aethionema arabicum HOM05D001163 ORTHO05D006243 2.0e-23 115.2 581 26.9
BcaB02g09498 Brassica carinata HOM05D001163 ORTHO05D006243 3.5e-23 114.4 597 27.0
BraA05t20020Z Brassica rapa HOM05D001163 ORTHO05D006243 4.5e-23 114.0 664 26.8
THA.LOC104814327 Tarenaya hassleriana HOM05D001163 ORTHO05D006243 5.9e-23 113.6 571 25.9
BcaC02g11575 Brassica carinata HOM05D001163 ORTHO05D006243 1.3e-22 112.5 694 26.4
BraA08t33090Z Brassica rapa HOM05D001163 ORTHO05D006243 2.2e-22 111.7 556 27.5
A05p10760 Brassica napus HOM05D001163 ORTHO05D006243 3.8e-22 110.9 664 26.7
BcaB04g18202 Brassica carinata HOM05D001163 ORTHO05D006243 6.5e-22 110.2 583 27.1
AT2G34920 Arabidopsis thaliana HOM05D001163 ORTHO05D006243 1.5e-21 109.0 690 24.9
Lj6g0024369 Lotus japonicus HOM05D001163 ORTHO05D006243 1.5e-21 109.0 625 25.4
A08p10930 Brassica napus HOM05D001163 ORTHO05D006243 1.9e-21 108.6 559 27.9
Cpa.g.c27631.2 Carica papaya HOM05D001163 ORTHO05D006243 4.0e-19 100.9 740 25.5
Ciclev10014128m.g Citrus clementina HOM05D001163 ORTHO05D006243 4.4e-18 97.4 643 24.3
Gorai.005G268800 Gossypium raimondii HOM05D001163 ORTHO05D006243 1.3e-17 95.9 680 24.6
Duzib132G0266 Durio zibethinus HOM05D001163 ORTHO05D006243 1.7e-17 95.5 696 24.7
AL4G30930 Arabidopsis lyrata HOM05D001163 ORTHO05D006243 2.2e-17 95.1 617 25.8
Gohir.D02G240300 Gossypium hirsutum HOM05D001163 ORTHO05D006243 2.2e-17 95.1 602 25.1
C04p64070 Brassica napus HOM05D001163 ORTHO05D006243 1.4e-16 92.4 642 25.1
RcHm_v2.0_Chr5g0021761 Rosa chinensis HOM05D001163 ORTHO05D006243 1.8e-16 92.0 106 45.3
Aa31LG6G2590 Aethionema arabicum HOM05D001163 ORTHO05D014764 4.1e-16 90.9 415 28.4
BcaB06g28823 Brassica carinata HOM05D001163 ORTHO05D006243 4.1e-16 90.9 662 25.2
Phvul.009G244700 Phaseolus vulgaris HOM05D001163 ORTHO05D006243 9.1e-16 89.7 618 24.1
BolC4t27883H Brassica oleracea HOM05D001163 ORTHO05D006243 2.0e-15 88.6 642 24.3
Lalb_Chr18g0051941 Lupinus albus HOM05D001163 ORTHO05D006243 4.5e-15 87.4 582 23.4
Prupe.4G120300 Prunus persica HOM05D001163 ORTHO05D006243 5.9e-15 87.0 108 45.4
Gohir.D12G049100 Gossypium hirsutum HOM05D001163 ORTHO05D006243 7.7e-15 86.7 671 24.0
BcaB02g09497 Brassica carinata HOM05D001163 ORTHO05D006243 2.9e-14 84.7 507 26.4
Atru.chr10.243 Acer truncatum HOM05D001163 ORTHO05D006243 6.5e-14 83.6 558 25.1
A04p26650 Brassica napus HOM05D001163 ORTHO05D006243 6.5e-14 83.6 643 24.0
Gorai.008G052000 Gossypium raimondii HOM05D001163 ORTHO05D006243 6.5e-14 83.6 671 23.1
BcaC02g07748 Brassica carinata HOM05D001163 ORTHO05D006243 8.5e-14 83.2 645 24.3
VMungo1309G2226 Vigna mungo HOM05D001163 ORTHO05D006243 8.5e-14 83.2 608 24.0
BraA04t18170Z Brassica rapa HOM05D001163 ORTHO05D006243 1.1e-13 82.8 635 24.7
Ca_02402_v3 Cicer arietinum L. HOM05D001163 ORTHO05D006243 1.1e-13 82.8 667 23.1
FAN21G1127 Fragaria x ananassa HOM05D001163 ORTHO05D006243 1.1e-13 82.8 97 44.3
FAN16G0054 Fragaria x ananassa HOM05D001163 ORTHO05D006243 1.5e-13 82.4 97 44.3
Sabra03G0113400 Salix brachista HOM05D001163 ORTHO05D006243 1.5e-13 82.4 628 24.2
TPR.G30936 Trifolium pratense HOM05D001163 ORTHO05D006243 2.5e-13 81.6 464 24.4
FvH4_3g13290 Fragaria vesca HOM05D001163 ORTHO05D006243 3.2e-13 81.3 97 43.3
FAN11G3010 Fragaria x ananassa HOM05D001163 ORTHO05D006243 3.2e-13 81.3 97 43.3
Glyma.15G155500 Glycine max HOM05D001163 ORTHO05D006243 3.2e-13 81.3 608 24.3
Lj4g0005018 Lotus japonicus HOM05D001163 ORTHO05D006243 4.2e-13 80.9 500 23.8
FAN25G3497 Fragaria x ananassa HOM05D001163 ORTHO05D006243 5.5e-13 80.5 97 43.3
MD05G1243100 Malus domestica HOM05D001163 ORTHO05D006243 5.5e-13 80.5 107 44.9
MD10G1225200 Malus domestica HOM05D001163 ORTHO05D006243 7.2e-13 80.1 107 44.9
Thecc.02G001500 Theobroma cacao HOM05D001163 ORTHO05D006243 1.6e-12 79.0 628 22.5
Gohir.A03G218400 Gossypium hirsutum HOM05D001163 ORTHO05D006243 2.1e-12 78.6 578 25.3
Sabra01G0052900 Salix brachista HOM05D001163 ORTHO05D006243 3.6e-12 77.8 122 38.5
TWI63G1213 Tripterygium wilfordii HOM05D001163 ORTHO05D006243 3.6e-12 77.8 683 23.0
BcaB06g28820 Brassica carinata HOM05D001163 ORTHO05D006243 8.0e-12 76.6 658 24.9
Gohir.A12G050800 Gossypium hirsutum HOM05D001163 ORTHO05D006243 2.3e-11 75.1 671 23.2
CANSAT35G1654 Cannabis sativa HOM05D001163 ORTHO05D006243 4.0e-11 74.3 705 22.3
MELO3C006998.2 Cucumis melo HOM05D001163 ORTHO05D006243 4.0e-11 74.3 108 37.0
Lalb_Chr15g0083671 Lupinus albus HOM05D001163 ORTHO05D006243 5.2e-11 73.9 550 23.3
QL11p010904 Quercus lobata HOM05D001163 ORTHO05D006243 5.2e-11 73.9 115 38.3
Lalb_Chr13g0293051 Lupinus albus HOM05D001163 ORTHO05D006243 8.8e-11 73.2 641 23.2
CiPaw.09G140200 Carya illinoinensis HOM05D001163 ORTHO05D006243 2.0e-10 72.0 657 22.2
Psat1g151440 Pisum sativum HOM05D001163 ORTHO05D006243 2.6e-10 71.6 619 23.4
Potri.001G074800 Populus trichocarpa HOM05D001163 ORTHO05D006243 3.4e-10 71.2 259 30.5
Potri.003G156400 Populus trichocarpa HOM05D001163 ORTHO05D006243 4.4e-10 70.9 622 23.6
Manes.03G072400 Manihot esculenta HOM05D001163 ORTHO05D006243 5.7e-10 70.5 115 33.9
Cfa001158 Carpinus fangiana HOM05D001163 ORTHO05D006243 1.3e-09 69.3 652 21.8
Manes.16G058900 Manihot esculenta HOM05D001163 ORTHO05D006243 1.3e-09 69.3 259 30.9
Sc17g0004310 Simmondsia chinensis HOM05D001163 ORTHO05D006243 1.7e-09 68.9 579 22.6
Lsat_1_v5_gn_8_107201 Lactuca sativa HOM05D001163 ORTHO05D006243 2.2e-09 68.6 137 31.4
Eucgr.E04326 Eucalyptus grandis HOM05D001163 ORTHO05D006243 3.7e-09 67.8 104 34.6
TPR.G27394 Trifolium pratense HOM05D001163 ORTHO05D006243 4.8e-09 67.4 217 29.5
Haze_05193 Corylus avellana HOM05D001163 ORTHO05D006243 8.3e-09 66.6 229 28.8
Lj1A1151T86 Lonicera japonica HOM05D001163 ORTHO05D006243 8.3e-09 66.6 152 34.9
Cc09_g04670 Coffea canephora HOM05D001163 ORTHO05D006243 1.1e-08 66.2 555 22.2
PGSC0003DMG400011288 Solanum tuberosum HOM05D001163 ORTHO05D006243 1.1e-08 66.2 121 33.9
ClCG01G025930 Citrullus lanatus HOM05D001163 ORTHO05D006243 1.4e-08 65.9 184 27.7
PGR042G0834 Punica granatum HOM05D001163 ORTHO05D006243 2.4e-08 65.1 93 36.6
Ca_18216_v3 Cicer arietinum L. HOM05D001163 ORTHO05D006243 3.1e-08 64.7 687 23.7
arahy.Tifrunner.gnm1.ann1.63SYA1 Arachis hypogaea HOM05D001163 ORTHO05D006243 5.4e-08 63.9 74 41.9
arahy.Tifrunner.gnm1.ann1.M3VXN8 Arachis hypogaea HOM05D001163 ORTHO05D006243 5.4e-08 63.9 62 46.8
arahy.Tifrunner.gnm1.ann1.X5K9YD Arachis hypogaea HOM05D001163 ORTHO05D006243 9.1e-08 63.2 609 23.2
Sopen10g001210 Solanum pennellii HOM05D001163 ORTHO05D006243 1.2e-07 62.8 128 32.8
arahy.Tifrunner.gnm1.ann1.XP2BFV Arachis hypogaea HOM05D001163 ORTHO05D006243 1.6e-07 62.4 608 22.7
DCAR_004358 Daucus carota HOM05D001163 ORTHO05D006243 2.0e-07 62.0 184 31.5
Medtr4g094795 Medicago truncatula HOM05D001163 ORTHO05D006243 3.5e-07 61.2 598 22.7
COL.COLO4_25029 Corchorus olitorius HOM05D001163 ORTHO05D006243 4.5e-07 60.8 518 23.4
Lsat_1_v5_gn_2_59740 Lactuca sativa HOM05D001163 ORTHO05D006243 5.9e-07 60.5 633 21.8
SalBow8G5620 Salvia bowleyana HOM05D001163 ORTHO05D006243 5.9e-07 60.5 171 27.5
GSVIVG01010075001 Vitis vinifera HOM05D001163 ORTHO05D006243 5.9e-07 60.5 716 22.6
Psat7g087000 Pisum sativum HOM05D001163 ORTHO05D006243 7.7e-07 60.1 669 24.4
CsaV3_6G053140 Cucumis sativus L. HOM05D001163 ORTHO05D006243 1.0e-06 59.7 493 20.9
ECA238G3617 Erigeron canadensis HOM05D001163 ORTHO05D006243 2.2e-06 58.5 449 22.5
unitig_748.g8069 Utricularia gibba HOM05D001163 ORTHO05D006243 2.2e-06 58.5 85 36.5
Ah.08g212290 Amaranthus hybridus HOM05D001163 ORTHO05D006243 5.0e-06 57.4 297 23.6


User provided reference genes

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