Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0327 Capsella rubella HOM05D007226 ORTHO05D009160 2.0e-100 369.0 176 100.0
AL8G14200 Arabidopsis lyrata HOM05D007226 ORTHO05D009160 5.7e-87 324.3 177 88.7
AL8G14380 Arabidopsis lyrata HOM05D007226 ORTHO05D009160 7.4e-87 323.9 177 88.7
Thhalv10001050m.g Eutrema salsugineum HOM05D007226 ORTHO05D009160 4.8e-86 321.2 176 86.4
AT5G45040 Arabidopsis thaliana HOM05D007226 ORTHO05D009160 1.7e-83 312.8 176 85.2
CARHR177680 Cardamine hirsuta HOM05D007226 ORTHO05D009160 9.4e-82 307.0 173 85.0
Sp2g09820 Schrenkiella parvula HOM05D007226 ORTHO05D009160 8.2e-78 293.9 173 81.5
BcaC03g16718 Brassica carinata HOM05D007226 ORTHO05D009160 1.8e-77 292.7 176 80.1
C02p45740 Brassica napus HOM05D007226 ORTHO05D009160 2.4e-77 292.4 176 80.1
BolC2t10635H Brassica oleracea HOM05D007226 ORTHO05D009160 3.1e-77 292.0 176 79.5
BolC2t10627H Brassica oleracea HOM05D007226 ORTHO05D009160 2.7e-76 288.9 169 81.7
BcaB07g30483 Brassica carinata HOM05D007226 ORTHO05D009160 3.5e-76 288.5 176 78.4
A02p28790 Brassica napus HOM05D007226 ORTHO05D009160 1.7e-75 286.2 176 79.5
BraA02t07911Z Brassica rapa HOM05D007226 ORTHO05D009160 6.5e-75 284.3 176 78.4
THA.LOC104812913 Tarenaya hassleriana HOM05D007226 ORTHO05D009160 7.7e-68 260.8 168 75.0
Aa31LG9G8170 Aethionema arabicum HOM05D007226 ORTHO05D009160 2.8e-65 252.3 201 64.7
C02p45640 Brassica napus HOM05D007226 ORTHO05D009160 2.0e-63 246.1 151 78.8
TAR371G1071 Trochodendron aralioides HOM05D007226 ORTHO05D009160 2.5e-58 229.2 174 65.5
Potri.015G121101 Populus trichocarpa HOM05D007226 ORTHO05D009160 3.3e-58 228.8 129 80.6
SGA_v2.0_scaffold175G39365 Striga asiatica HOM05D007226 ORTHO05D009160 5.6e-58 228.0 175 62.3
Dinv05963 Davidia involucrata HOM05D007226 ORTHO05D009160 1.6e-57 226.5 171 64.3
QL11p017833 Quercus lobata HOM05D007226 ORTHO05D009160 2.8e-57 225.7 136 76.5
Nn7g38162 Nelumbo nucifera HOM05D007226 ORTHO05D009160 4.7e-57 224.9 136 75.0
CSS0023119 Camellia sinensis var. sinensis HOM05D007226 ORTHO05D009160 1.0e-56 223.8 132 78.0
Migut.M01975 Erythranthe guttata HOM05D007226 ORTHO05D009160 1.8e-56 223.0 139 73.4
GSVIVG01012076001 Vitis vinifera HOM05D007226 ORTHO05D009160 3.0e-56 222.2 134 78.4
Actinidia22392 Actinidia chinensis HOM05D007226 ORTHO05D009160 4.0e-56 221.9 171 62.0
Cc09_g06180 Coffea canephora HOM05D007226 ORTHO05D009160 5.2e-56 221.5 172 63.4
HanXRQChr14g0447221 Helianthus annuus HOM05D007226 ORTHO05D009160 5.2e-56 221.5 156 64.7
Thecc.06G141800 Theobroma cacao HOM05D007226 ORTHO05D009160 6.8e-56 221.1 132 76.5
Cpa.g.sc135.15 Carica papaya HOM05D007226 ORTHO05D009160 2.6e-55 219.2 133 74.4
Cfa000717 Carpinus fangiana HOM05D007226 ORTHO05D009160 2.6e-55 219.2 156 66.7
Ca_18766_v3 Cicer arietinum L. HOM05D007226 ORTHO05D009160 7.5e-55 217.6 153 65.4
Lj4g0002757 Lotus japonicus HOM05D007226 ORTHO05D009160 7.5e-55 217.6 147 67.3
Nitab4.5_0003773g0030 Nicotiana tabacum HOM05D007226 ORTHO05D009160 9.8e-55 217.2 129 73.6
Sabra15G0137600 Salix brachista HOM05D007226 ORTHO05D009160 9.8e-55 217.2 153 69.3
PGSC0003DMG400010353 Solanum tuberosum HOM05D007226 ORTHO05D009160 1.3e-54 216.9 169 60.9
CiPaw.09G078000 Carya illinoinensis HOM05D007226 ORTHO05D009160 1.7e-54 216.5 147 66.7
PGR004G0179 Punica granatum HOM05D007226 ORTHO05D009160 1.7e-54 216.5 128 75.8
Duzib192G0307 Durio zibethinus HOM05D007226 ORTHO05D009160 2.2e-54 216.1 145 70.3
Medtr4g083990 Medicago truncatula HOM05D007226 ORTHO05D009160 2.2e-54 216.1 160 64.4
Prupe.4G111200 Prunus persica HOM05D007226 ORTHO05D009160 2.2e-54 216.1 164 62.8
ECA238G0615 Erigeron canadensis HOM05D007226 ORTHO05D009160 3.7e-54 215.3 168 61.3
SalBow6G7060 Salvia bowleyana HOM05D007226 ORTHO05D009160 4.9e-54 214.9 137 72.3
SalBow8G0530 Salvia bowleyana HOM05D007226 ORTHO05D009160 4.9e-54 214.9 137 72.3
Sopen02g018030 Solanum pennellii HOM05D007226 ORTHO05D009160 1.1e-53 213.8 172 59.3
CAN.G149.55 Capsicum annuum HOM05D007226 ORTHO05D009160 1.4e-53 213.4 125 76.8
Ciclev10017084m.g Citrus clementina HOM05D007226 ORTHO05D009160 1.8e-53 213.0 146 67.1
MD05G1252700 Malus domestica HOM05D007226 ORTHO05D009160 1.8e-53 213.0 141 70.9
Eucgr.E01876 Eucalyptus grandis HOM05D007226 ORTHO05D009160 2.4e-53 212.6 146 69.2
COL.COLO4_30987 Corchorus olitorius HOM05D007226 ORTHO05D009160 3.2e-53 212.2 128 75.0
Lalb_Chr05g0219731 Lupinus albus HOM05D007226 ORTHO05D009160 3.2e-53 212.2 172 59.3
VMungo0251G0617 Vigna mungo HOM05D007226 ORTHO05D009160 4.1e-53 211.8 131 71.8
Phvul.002G098700 Phaseolus vulgaris HOM05D007226 ORTHO05D009160 5.4e-53 211.5 131 72.5
FvH4_3g12220 Fragaria vesca HOM05D007226 ORTHO05D009160 7.0e-53 211.1 148 67.6
Manes.16G056825 Manihot esculenta HOM05D007226 ORTHO05D009160 7.0e-53 211.1 128 75.8
Gohir.D06G145000 Gossypium hirsutum HOM05D007226 ORTHO05D009160 1.2e-52 210.3 156 63.5
Gorai.010G168700 Gossypium raimondii HOM05D007226 ORTHO05D009160 1.2e-52 210.3 156 63.5
Rhsim02G0212700 Rhododendron simsii HOM05D007226 ORTHO05D009160 1.2e-52 210.3 128 75.0
Solyc02g068930.4 Solanum lycopersicum HOM05D007226 ORTHO05D009160 1.6e-52 209.9 129 74.4
Atru.chr10.515 Acer truncatum HOM05D007226 ORTHO05D009160 3.5e-52 208.8 174 59.8
TWI38G0719 Tripterygium wilfordii HOM05D007226 ORTHO05D009160 1.0e-51 207.2 155 66.5
FAN21G0149 Fragaria x ananassa HOM05D007226 ORTHO05D009160 2.3e-51 206.1 134 70.9
Gohir.A06G141000 Gossypium hirsutum HOM05D007226 ORTHO05D009160 2.3e-51 206.1 156 63.5
Glyma.07G221900 Glycine max HOM05D007226 ORTHO05D009160 1.5e-50 203.4 146 66.4
FAN25G1348 Fragaria x ananassa HOM05D007226 ORTHO05D009160 2.5e-50 202.6 126 72.2
Lsat_1_v5_gn_2_62900 Lactuca sativa HOM05D007226 ORTHO05D009160 3.3e-50 202.2 170 57.1
ClCG01G025800 Citrullus lanatus HOM05D007226 ORTHO05D009160 4.3e-50 201.8 132 69.7
DCAR_004326 Daucus carota HOM05D007226 ORTHO05D009160 4.3e-50 201.8 138 70.3
RcHm_v2.0_Chr5g0020011 Rosa chinensis HOM05D007226 ORTHO05D009160 4.3e-50 201.8 118 77.1
Haze_06036 Corylus avellana HOM05D007226 ORTHO05D009160 5.6e-50 201.4 194 54.1
Ah.05g171090 Amaranthus hybridus HOM05D007226 ORTHO05D009160 4.7e-49 198.4 134 67.2
arahy.Tifrunner.gnm1.ann1.X3ZR55 Arachis hypogaea HOM05D007226 ORTHO05D009160 1.4e-48 196.8 154 60.4
TPR.G20974 Trifolium pratense HOM05D007226 ORTHO05D009160 1.4e-48 196.8 107 79.4
Peaxi162Scf00149g00723 Petunia axillaris HOM05D007226 ORTHO05D009160 2.3e-48 196.1 105 81.9
Aqoxy1G01459 Aquilegia oxysepala HOM05D007226 ORTHO05D009160 5.2e-48 194.9 169 59.8
PSO675G1576 Papaver somniferum HOM05D007226 ORTHO05D009160 8.9e-48 194.1 125 72.0
Oeu056023.2 Olea europaea HOM05D007226 ORTHO05D009160 7.5e-47 191.0 103 80.6
Nitab4.5_0001288g0030 Nicotiana tabacum HOM05D007226 ORTHO05D009160 9.8e-47 190.7 153 61.4
CsaV3_6G053010 Cucumis sativus L. HOM05D007226 ORTHO05D009160 1.3e-46 190.3 130 66.2
CDE06G2689 Ceratophyllum demersum HOM05D007226 ORTHO05D009160 2.2e-46 189.5 144 59.7
vmacro03514 Vaccinium macrocarpon HOM05D007226 ORTHO05D009160 8.3e-46 187.6 180 53.9
arahy.Tifrunner.gnm1.ann1.8FEK6M Arachis hypogaea HOM05D007226 ORTHO05D009160 1.9e-45 186.4 105 76.2
MELO3C007008.2 Cucumis melo HOM05D007226 ORTHO05D009160 3.2e-45 185.7 103 76.7
CDE02G1897 Ceratophyllum demersum HOM05D007226 ORTHO05D009160 2.0e-44 183.0 142 58.5
Sc15g0002750 Simmondsia chinensis HOM05D007226 ORTHO05D009160 7.8e-44 181.0 105 71.4
SEGI_36655 Sequoiadendron giganteum HOM05D007226 ORTHO05D009160 5.2e-40 168.3 121 64.5
ATR0763G163 Amborella trichopoda HOM05D007226 ORTHO05D009160 8.9e-40 167.5 179 49.2
AUR62014337 Chenopodium quinoa HOM05D005358 ORTHO05D006384 2.0e-39 166.4 113 67.3
Sed0015403 Sechium edule HOM05D007226 ORTHO05D009160 1.1e-37 160.6 91 72.5
SMO356G0712 Selaginella moellendorffii HOM05D007226 ORTHO05D009160 7.8e-36 154.5 119 59.7
AagrBONN_evm.TU.Sc2ySwM_369.234 Anthoceros agrestis HOM05D007226 ORTHO05D009160 3.0e-35 152.5 94 68.1
Psat7g130920 Pisum sativum HOM05D007226 ORTHO05D009160 4.0e-32 142.1 113 62.8
Pp3c13_8590 Physcomitrium patens HOM05D007226 ORTHO05D009160 1.2e-31 140.6 89 66.3
Mapoly0135s0037 Marchantia polymorpha HOM05D007226 ORTHO05D009160 1.5e-31 140.2 112 56.2
Glyma.20G020600 Glycine max HOM05D007226 ORTHO05D009160 9.9e-31 137.5 143 49.0
MBI19_g38421_MAGBIO Magnolia biondii HOM05D007226 ORTHO05D009160 3.8e-30 135.6 127 52.8
HanXRQChr14g0447281 Helianthus annuus HOM05D007226 ORTHO05D009160 1.9e-26 123.2 131 49.6
Cre16.g670950 Chlamydomonas reinhardtii HOM05D007226 ORTHO05D009160 4.7e-25 118.6 89 55.1
Hma1.2p1_0040F.1_g025140 Hydrangea macrophylla HOM05D007226 ORTHO05D009160 4.0e-24 115.5 58 84.5
MCO04G097 Micromonas commoda HOM05D007226 ORTHO05D009160 2.0e-23 113.2 89 51.7
HPP92_015945 Vanilla planifolia HOM05D007226 ORTHO05D009160 2.6e-23 112.8 98 54.1
Lj2C351T11 Lonicera japonica HOM05D007226 ORTHO05D009160 3.4e-23 112.5 68 72.1
PSO541G5038 Papaver somniferum HOM05D007226 ORTHO05D009160 3.2e-21 105.9 140 46.4
PRCOL_00005064 Prasinoderma coloniale HOM05D007226 ORTHO05D009160 9.6e-18 94.4 88 47.7
MD10G1233800 Malus domestica HOM05D007226 ORTHO05D009160 4.3e-10 68.9 66 45.5


User provided reference genes

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