Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0275 Capsella rubella HOM05D005374 ORTHO05D006534 1.9e-178 629.0 316 100.0
AL8G13440 Arabidopsis lyrata HOM05D005374 ORTHO05D006534 3.3e-162 575.1 319 91.2
AT5G45360 Arabidopsis thaliana HOM05D005374 ORTHO05D006534 1.7e-158 562.8 319 89.3
CARHR176710 Cardamine hirsuta HOM05D005374 ORTHO05D006534 8.2e-145 517.3 318 83.6
Sp2g10310 Schrenkiella parvula HOM05D005374 ORTHO05D006534 6.8e-139 497.7 319 79.9
Thhalv10000968m.g Eutrema salsugineum HOM05D005374 ORTHO05D006534 3.0e-131 472.2 319 75.2
BcaB07g30892 Brassica carinata HOM05D005374 ORTHO05D006534 2.8e-124 449.1 319 71.2
THA.LOC104811099 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 4.4e-122 441.8 338 68.0
BcaC06g34439 Brassica carinata HOM05D005374 ORTHO05D006534 9.8e-122 440.7 320 72.5
C07p28440 Brassica napus HOM05D005374 ORTHO05D006534 9.8e-122 440.7 320 72.5
BolC7t43384H Brassica oleracea HOM05D005374 ORTHO05D006534 6.3e-121 438.0 320 72.2
C09p27770 Brassica napus HOM05D005374 ORTHO05D006534 6.6e-118 427.9 320 69.4
A09p21700 Brassica napus HOM05D005374 ORTHO05D006534 1.4e-115 420.2 317 68.5
BcaC04g21776 Brassica carinata HOM05D005374 ORTHO05D006534 1.2e-114 417.2 320 68.4
Aa31LG9G7650 Aethionema arabicum HOM05D005374 ORTHO05D006534 2.0e-114 416.4 338 67.2
BraA06t27536Z Brassica rapa HOM05D005374 ORTHO05D006534 3.4e-114 415.6 319 69.6
BcaC06g31556 Brassica carinata HOM05D005374 ORTHO05D006534 4.4e-114 415.2 318 68.9
A06p46630 Brassica napus HOM05D005374 ORTHO05D006534 7.5e-114 414.5 318 68.9
TWI18G0367 Tripterygium wilfordii HOM05D005374 ORTHO05D006534 4.6e-103 378.6 344 59.6
Prupe.1G353600 Prunus persica HOM05D005374 ORTHO05D006534 2.5e-101 372.9 329 59.6
Glyma.11G090700 Glycine max HOM05D005374 ORTHO05D006534 7.3e-101 371.3 327 59.6
Ca_25046_v3 Cicer arietinum L. HOM05D005374 ORTHO05D006534 9.5e-101 370.9 328 58.8
Glyma.01G154100 Glycine max HOM05D005374 ORTHO05D006534 9.5e-101 370.9 325 59.4
COL.COLO4_16753 Corchorus olitorius HOM05D005374 ORTHO05D006534 1.6e-100 370.2 331 59.5
Thecc.03G319500 Theobroma cacao HOM05D005374 ORTHO05D006534 1.6e-100 370.2 331 60.1
HanXRQChr17g0558081 Helianthus annuus HOM05D005374 ORTHO05D006534 3.6e-100 369.0 322 58.7
Nn1g09345 Nelumbo nucifera HOM05D005374 ORTHO05D006534 4.7e-100 368.6 322 59.0
Gohir.D12G204500 Gossypium hirsutum HOM05D005374 ORTHO05D006534 2.3e-99 366.3 328 58.8
Gorai.008G219400 Gossypium raimondii HOM05D005374 ORTHO05D006534 2.3e-99 366.3 328 58.8
Dinv37427 Davidia involucrata HOM05D005374 ORTHO05D006534 3.1e-99 365.9 354 55.9
Atru.chr8.2626 Acer truncatum HOM05D005374 ORTHO05D006534 6.8e-99 364.8 319 59.2
arahy.Tifrunner.gnm1.ann1.B0SCIB Arachis hypogaea HOM05D005374 ORTHO05D006534 6.8e-99 364.8 329 58.7
arahy.Tifrunner.gnm1.ann1.BM6K92 Arachis hypogaea HOM05D005374 ORTHO05D006534 6.8e-99 364.8 329 58.7
Lj2g0008244 Lotus japonicus HOM05D005374 ORTHO05D006534 6.8e-99 364.8 330 59.1
TAR629G3354 Trochodendron aralioides HOM05D005374 ORTHO05D006534 8.9e-99 364.4 326 59.8
GSVIVG01036874001 Vitis vinifera HOM05D005374 ORTHO05D006534 1.2e-98 364.0 327 59.0
Lsat_1_v5_gn_6_17221 Lactuca sativa HOM05D005374 ORTHO05D006534 1.5e-98 363.6 320 59.4
Lalb_Chr16g0380381 Lupinus albus HOM05D005374 ORTHO05D006534 3.4e-98 362.5 328 59.1
Nn7g37386 Nelumbo nucifera HOM05D005374 ORTHO05D006534 7.6e-98 361.3 322 57.8
Phvul.002G121600 Phaseolus vulgaris HOM05D005374 ORTHO05D006534 1.3e-97 360.5 326 58.9
Psat2g145440 Pisum sativum HOM05D005374 ORTHO05D006534 4.9e-97 358.6 328 58.2
Gohir.A12G201800 Gossypium hirsutum HOM05D005374 ORTHO05D006534 6.4e-97 358.2 329 57.4
TPR.G8985 Trifolium pratense HOM05D005374 ORTHO05D006534 6.4e-97 358.2 329 58.1
VMungo1215G0733 Vigna mungo HOM05D005374 ORTHO05D006534 6.4e-97 358.2 325 58.2
CiPaw.11G074900 Carya illinoinensis HOM05D005374 ORTHO05D006534 8.3e-97 357.8 327 57.5
Medtr5g025560 Medicago truncatula HOM05D005374 ORTHO05D006534 1.4e-96 357.1 326 58.3
ECA233G3708 Erigeron canadensis HOM05D004228 ORTHO05D005137 2.4e-96 356.3 329 56.5
Cfa012294 Carpinus fangiana HOM05D005374 ORTHO05D006534 9.2e-96 354.4 328 58.8
CsaV3_4G027900 Cucumis sativus L. HOM05D005374 ORTHO05D006534 9.2e-96 354.4 324 57.7
Duzib205G0577 Durio zibethinus HOM05D005374 ORTHO05D006534 1.2e-95 354.0 327 57.5
Hma1.2p1_1841F.1_g304960 Hydrangea macrophylla HOM05D005374 ORTHO05D006534 1.2e-95 354.0 341 55.4
Cc08_g05810 Coffea canephora HOM05D005374 ORTHO05D006534 2.1e-95 353.2 270 64.1
Manes.15G191300 Manihot esculenta HOM05D005374 ORTHO05D006534 2.1e-95 353.2 336 56.2
MELO3C010523.2 Cucumis melo HOM05D005374 ORTHO05D006534 6.0e-95 351.7 324 57.1
RcHm_v2.0_Chr6g0304341 Rosa chinensis HOM05D005374 ORTHO05D006534 6.0e-95 351.7 330 56.4
Actinidia14732 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.0e-94 350.9 340 55.3
Eucgr.E01146 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.0e-94 350.9 319 56.7
Sed0016570 Sechium edule HOM05D005374 ORTHO05D006534 1.0e-94 350.9 321 58.3
CSS0021507 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.3e-94 349.7 337 56.7
CAN.G884.8 Capsicum annuum HOM05D005374 ORTHO05D006534 3.9e-94 349.0 363 52.3
Lj8A3T11 Lonicera japonica HOM05D005374 ORTHO05D006534 8.6e-94 347.8 329 57.1
Nitab4.5_0006438g0020 Nicotiana tabacum HOM05D005374 ORTHO05D006534 1.1e-93 347.4 389 50.1
Oeu046780.1 Olea europaea HOM05D005374 ORTHO05D006534 1.1e-93 347.4 265 64.2
Sabra01G0180500 Salix brachista HOM05D005374 ORTHO05D006534 1.5e-93 347.1 328 56.4
Oeu015544.1 Olea europaea HOM05D005374 ORTHO05D006534 7.3e-93 344.7 310 59.7
Migut.A00528 Erythranthe guttata HOM05D005374 ORTHO05D006534 8.1e-92 341.3 375 51.7
Ciclev10012169m.g Citrus clementina HOM05D005374 ORTHO05D006534 1.8e-91 340.1 334 53.3
DCAR_004533 Daucus carota HOM05D005374 ORTHO05D006534 6.8e-91 338.2 343 52.5
Solyc08g075380.3 Solanum lycopersicum HOM05D005374 ORTHO05D006534 6.8e-91 338.2 254 64.2
Sopen08g024010 Solanum pennellii HOM05D005374 ORTHO05D006534 6.8e-91 338.2 254 64.2
Rhsim07G0140100 Rhododendron simsii HOM05D005374 ORTHO05D006534 1.2e-90 337.4 317 56.2
MD15G1000900 Malus domestica HOM05D005374 ORTHO05D006534 3.4e-90 335.9 340 52.9
PGSC0003DMG400001963 Solanum tuberosum HOM05D005374 ORTHO05D006534 3.4e-90 335.9 254 63.8
MSTRG.11863 Avicennia marina HOM05D005374 ORTHO05D006534 4.4e-90 335.5 385 49.4
FvH4_2g37370 Fragaria vesca HOM05D005374 ORTHO05D006534 4.4e-90 335.5 331 54.7
AUR62030411 Chenopodium quinoa HOM05D005374 ORTHO05D006534 9.9e-90 334.3 335 54.0
SGA_v2.0_scaffold89G27377 Striga asiatica HOM05D005374 ORTHO05D006534 9.9e-90 334.3 386 50.8
FAN15G3753 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.8e-89 332.4 330 54.5
CSS0025693 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 8.4e-89 331.3 321 54.5
Aqoxy3G00850 Aquilegia oxysepala HOM05D005374 ORTHO05D006534 1.9e-88 330.1 325 51.7
PGR031G1488 Punica granatum HOM05D005374 ORTHO05D006534 3.2e-88 329.3 328 54.3
SalBow8G5130 Salvia bowleyana HOM05D005374 ORTHO05D006534 3.2e-88 329.3 269 61.0
Ah.12g058460 Amaranthus hybridus HOM05D005374 ORTHO05D006534 7.1e-88 328.2 330 53.0
CDE02G3607 Ceratophyllum demersum HOM05D005374 ORTHO05D006534 2.1e-87 326.6 327 53.2
EL10Ac5g12585 Beta vulgaris HOM05D005374 ORTHO05D006534 3.5e-87 325.9 335 52.2
Potri.004G236200 Populus trichocarpa HOM05D005374 ORTHO05D006534 1.7e-86 323.6 334 52.4
TAR629G2486 Trochodendron aralioides HOM05D005374 ORTHO05D006534 1.7e-86 323.6 290 58.6
MBI04_g06277_MAGBIO Magnolia biondii HOM05D005374 ORTHO05D006534 3.0e-86 322.8 254 60.2
Peaxi162Scf00193g00717 Petunia axillaris HOM05D005374 ORTHO05D006534 3.0e-86 322.8 307 55.4
FAN27G3004 Fragaria x ananassa HOM05D005374 ORTHO05D006534 3.9e-86 322.4 356 50.6
ATR0568G167 Amborella trichopoda HOM05D005374 ORTHO05D006534 5.1e-86 322.0 353 51.8
Haze_08435 Corylus avellana HOM05D005374 ORTHO05D006534 5.1e-86 322.0 324 55.2
unitig_747.g21918 Utricularia gibba HOM05D005374 ORTHO05D006534 1.5e-85 320.5 382 49.2
AUR62010482 Chenopodium quinoa HOM05D005374 ORTHO05D006534 4.3e-85 318.9 328 54.3
QL12p004193 Quercus lobata HOM05D005374 ORTHO05D006534 7.3e-85 318.2 273 60.8
PGSC0003DMG400018477 Solanum tuberosum HOM05D005374 ORTHO05D006534 1.6e-84 317.0 387 47.3
Peaxi162Scf00045g00731 Petunia axillaris HOM05D005374 ORTHO05D006534 4.0e-83 312.4 379 47.0
Dinv41805 Davidia involucrata HOM05D005374 ORTHO05D006534 2.0e-82 310.1 324 52.2
Nitab4.5_0002244g0130 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.8e-81 305.8 232 63.4
Os06g0709100 Oryza sativa ssp. japonica HOM05D005374 ORTHO05D006534 6.4e-81 305.1 331 50.5
ClCG11G016070 Citrullus lanatus HOM05D005374 ORTHO05D006534 1.4e-80 303.9 341 51.9
Sc22g0002240 Simmondsia chinensis HOM05D005374 ORTHO05D006534 4.6e-79 298.9 293 54.6
PSO541G3556 Papaver somniferum HOM05D005374 ORTHO05D006534 7.8e-79 298.1 214 65.0
SEGI_04185 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 1.3e-78 297.4 376 45.7
Hund14303 Selenicereus undatus HOM05D005374 ORTHO05D006534 8.7e-78 294.7 314 52.5
DCAR_000721 Daucus carota HOM05D005374 ORTHO05D006534 7.3e-77 291.6 263 55.9
FAN20G2320 Fragaria x ananassa HOM05D005374 ORTHO05D006534 2.0e-74 283.5 341 46.9
arahy.Tifrunner.gnm1.ann1.W15AHF Arachis hypogaea HOM05D005374 ORTHO05D006534 5.8e-74 282.0 210 63.3
arahy.Tifrunner.gnm1.ann1.Y4UVSP Arachis hypogaea HOM05D005374 ORTHO05D006534 7.6e-74 281.6 207 63.8
Duzib084G1112 Durio zibethinus HOM05D005374 ORTHO05D006534 7.6e-74 281.6 240 62.1
HPP92_022746 Vanilla planifolia HOM05D005374 ORTHO05D006534 1.7e-73 280.4 312 47.8
Mapoly0004s0051 Marchantia polymorpha HOM05D005374 ORTHO05D006534 7.9e-71 271.6 321 46.1
Nitab4.5_0001175g0180 Nicotiana tabacum HOM05D005374 ORTHO05D006534 3.0e-70 269.6 384 43.0
Cpa.g.sc227.1 Carica papaya HOM05D005374 ORTHO05D006534 1.5e-66 257.3 159 71.1
Pp3c9_17990 Physcomitrium patens HOM05D005374 ORTHO05D006534 1.0e-65 254.6 329 44.4
Zm00001eb227600 Zea mays HOM05D005374 ORTHO05D006534 4.3e-61 239.2 244 52.5
SMO353G0174 Selaginella moellendorffii HOM05D005374 ORTHO05D006534 4.5e-58 229.2 310 41.9
Nitab4.5_0000030g0530 Nicotiana tabacum HOM05D005374 ORTHO05D006534 2.9e-57 226.5 276 45.7
vmacro14239 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 3.5e-55 219.5 167 59.3
CAN.G998.19 Capsicum annuum HOM05D005374 ORTHO05D006534 1.8e-54 217.2 174 59.2
SEGI_09240 Sequoiadendron giganteum HOM05D005374 ORTHO05D006534 6.7e-54 215.3 227 46.7
CBR_g46850 Chara braunii HOM05D005374 ORTHO05D006534 6.5e-49 198.7 367 36.0
Actinidia26790 Actinidia chinensis HOM05D005374 ORTHO05D006534 1.0e-46 191.4 178 59.0
Eucgr.G01888 Eucalyptus grandis HOM05D005374 ORTHO05D006534 1.5e-37 161.0 142 56.3
CSS0023834 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 1.1e-35 154.8 129 55.8
MCO16G622 Micromonas commoda HOM05D005374 ORTHO05D006534 1.2e-34 151.4 312 32.7
CSS0042781 Camellia sinensis var. sinensis HOM05D005374 ORTHO05D006534 2.6e-29 133.7 113 54.0
Eucgr.B01591 Eucalyptus grandis HOM05D005374 ORTHO05D006534 3.8e-25 119.8 80 66.2
arahy.Tifrunner.gnm1.ann1.5XIH37 Arachis hypogaea HOM05D005374 ORTHO05D006534 9.4e-24 115.2 87 59.8
Cpa.g.c37165 Carica papaya HOM05D005374 ORTHO05D006534 1.7e-20 104.4 118 55.9
MD08G1001600 Malus domestica HOM05D005374 ORTHO05D006534 1.8e-19 100.9 96 49.0
THA.LOC104811124 Tarenaya hassleriana HOM05D005374 ORTHO05D006534 1.9e-16 90.9 99 55.6
vmacro14240 Vaccinium macrocarpon HOM05D005374 ORTHO05D006534 5.5e-16 89.4 118 50.8
Nn1g08747 Nelumbo nucifera HOM05D005374 ORTHO05D006534 1.2e-13 81.6 52 61.5
CAN.G1511.1 Capsicum annuum HOM05D005374 ORTHO05D006534 1.5e-13 81.3 73 57.5
Actinidia26789 Actinidia chinensis HOM05D005374 ORTHO05D006534 9.8e-13 78.6 100 43.0
arahy.Tifrunner.gnm1.ann1.FJF7PC Arachis hypogaea HOM05D005374 ORTHO05D006534 1.2e-10 71.6 53 66.0
arahy.Tifrunner.gnm1.ann1.ZNC245 Arachis hypogaea HOM05D005374 ORTHO05D006534 3.8e-09 66.6 45 66.7
Cre01.g021200 Chlamydomonas reinhardtii HOM05D005374 ORTHO05D006534 6.1e-07 59.3 447 19.9
Cc02_g01150 Coffea canephora HOM05D008044 ORTHO05D010106 2.3e-06 57.4 142 26.8


User provided reference genes

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