Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0244 Capsella rubella HOM05D006875 ORTHO05D008416 5.6e-95 350.9 172 100.0
AT5G45590 Arabidopsis thaliana HOM05D006875 ORTHO05D008416 2.1e-86 322.4 175 93.7
AL8G13090 Arabidopsis lyrata HOM05D006875 ORTHO05D008416 5.8e-84 314.3 174 92.5
CARHR176440 Cardamine hirsuta HOM05D006875 ORTHO05D008416 3.7e-83 311.6 170 89.4
Thhalv10001052m.g Eutrema salsugineum HOM05D006875 ORTHO05D008416 9.2e-82 307.0 175 88.6
Sp2g10480 Schrenkiella parvula HOM05D006875 ORTHO05D008416 4.4e-76 288.1 174 84.5
BcaC06g31539 Brassica carinata HOM05D006875 ORTHO05D008416 4.9e-75 284.6 172 82.6
Aa31LG9G7450 Aethionema arabicum HOM05D006875 ORTHO05D008416 1.5e-71 273.1 172 80.8
A06p46520 Brassica napus HOM05D006875 ORTHO05D008416 2.5e-71 272.3 177 80.8
BolC7t43404H Brassica oleracea HOM05D006875 ORTHO05D008416 2.5e-71 272.3 176 80.7
BraA06t27526Z Brassica rapa HOM05D006875 ORTHO05D008416 2.5e-71 272.3 177 80.8
C02p46480 Brassica napus HOM05D006875 ORTHO05D008416 7.3e-71 270.8 172 80.2
BcaC03g16779 Brassica carinata HOM05D006875 ORTHO05D008416 9.5e-71 270.4 172 80.2
BolC2t10706H Brassica oleracea HOM05D006875 ORTHO05D008416 9.5e-71 270.4 172 80.2
BcaC06g34424 Brassica carinata HOM05D006875 ORTHO05D008416 2.8e-70 268.9 173 80.9
C07p28660 Brassica napus HOM05D006875 ORTHO05D008416 2.8e-70 268.9 173 80.9
THA.LOC104806179 Tarenaya hassleriana HOM05D006875 ORTHO05D008416 5.1e-64 248.1 179 72.1
A02p29280 Brassica napus HOM05D006875 ORTHO05D008416 1.3e-51 206.8 172 65.7
BraA02t07958Z Brassica rapa HOM05D006875 ORTHO05D008416 1.3e-51 206.8 172 65.7
Actinidia18144 Actinidia chinensis HOM05D006875 ORTHO05D008416 5.1e-40 168.3 178 53.9
Nitab4.5_0000109g0180 Nicotiana tabacum HOM05D006875 ORTHO05D008416 1.9e-39 166.4 173 55.5
Duzib205G1866 Durio zibethinus HOM05D006875 ORTHO05D008416 2.1e-38 162.9 171 51.5
Lalb_Chr05g0215561 Lupinus albus HOM05D006875 ORTHO05D008416 2.1e-38 162.9 178 53.9
Actinidia14761 Actinidia chinensis HOM05D006875 ORTHO05D008416 2.8e-38 162.5 178 53.9
Prupe.5G024300 Prunus persica HOM05D006875 ORTHO05D008416 1.4e-37 160.2 177 52.0
Duzib068G0693 Durio zibethinus HOM05D006875 ORTHO05D008416 1.8e-37 159.8 171 50.9
Gohir.D08G173100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 1.8e-37 159.8 175 50.3
CSS0027486 Camellia sinensis var. sinensis HOM05D006875 ORTHO05D008416 3.1e-37 159.1 188 51.6
Solyc06g066190.3 Solanum lycopersicum HOM05D006875 ORTHO05D008416 3.4e-36 155.6 173 53.8
Dinv29039 Davidia involucrata HOM05D006875 ORTHO05D008416 1.0e-35 154.1 174 51.7
Potri.001G133600 Populus trichocarpa HOM05D006875 ORTHO05D008416 1.0e-35 154.1 184 50.0
Nitab4.5_0005761g0030 Nicotiana tabacum HOM05D006875 ORTHO05D008416 2.2e-35 152.9 189 50.3
PGSC0003DMG400020470 Solanum tuberosum HOM05D006875 ORTHO05D008416 2.2e-35 152.9 175 53.1
TAR629G1490 Trochodendron aralioides HOM05D006875 ORTHO05D008416 2.9e-35 152.5 176 51.1
Ca_25148_v3 Cicer arietinum L. HOM05D006875 ORTHO05D008416 3.8e-35 152.1 173 49.7
CiPaw.12G070200 Carya illinoinensis HOM05D006875 ORTHO05D008416 4.9e-35 151.8 184 50.5
RcHm_v2.0_Chr7g0212891 Rosa chinensis HOM05D006875 ORTHO05D008416 8.4e-35 151.0 177 52.5
Hund14386 Selenicereus undatus HOM05D006875 ORTHO05D008416 8.4e-35 151.0 187 48.1
Sopen06g024670 Solanum pennellii HOM05D006875 ORTHO05D008416 1.4e-34 150.2 173 53.2
Lalb_Chr16g0380861 Lupinus albus HOM05D006875 ORTHO05D008416 1.9e-34 149.8 177 53.1
GSVIVG01011544001 Vitis vinifera HOM05D006875 ORTHO05D008416 5.5e-34 148.3 146 57.5
Cc08_g04080 Coffea canephora HOM05D006875 ORTHO05D008416 1.2e-33 147.1 174 52.3
Peaxi162Scf00185g01627 Petunia axillaris HOM05D006875 ORTHO05D008416 1.6e-33 146.7 176 52.8
TPR.G9090 Trifolium pratense HOM05D006875 ORTHO05D008416 2.7e-33 146.0 172 48.3
Medtr5g027470 Medicago truncatula HOM05D006875 ORTHO05D008416 1.8e-32 143.3 172 48.8
Migut.E01333 Erythranthe guttata HOM05D006875 ORTHO05D008416 3.0e-32 142.5 181 50.3
EL10Ac5g11986 Beta vulgaris HOM05D006875 ORTHO05D008416 5.1e-32 141.7 174 47.7
Glyma.01G009800 Glycine max HOM05D006875 ORTHO05D008416 8.7e-32 141.0 172 50.0
Nn1g01960 Nelumbo nucifera HOM05D006875 ORTHO05D008416 1.1e-31 140.6 173 52.0
Phvul.002G132700 Phaseolus vulgaris HOM05D006875 ORTHO05D008416 1.9e-31 139.8 172 51.7
MSTRG.13901 Avicennia marina HOM05D006875 ORTHO05D008416 2.5e-31 139.4 186 48.4
SalBow4G1271 Salvia bowleyana HOM05D006875 ORTHO05D008416 2.5e-31 139.4 175 49.7
Sed0011128 Sechium edule HOM05D006875 ORTHO05D008416 4.3e-31 138.7 175 48.6
Sc01g0006090 Simmondsia chinensis HOM05D006875 ORTHO05D008416 4.3e-31 138.7 176 49.4
Ah.12g055650 Amaranthus hybridus HOM05D006875 ORTHO05D008416 5.7e-31 138.3 181 49.2
Glyma.09G211300 Glycine max HOM05D006875 ORTHO05D008416 9.7e-31 137.5 169 51.5
Oeu044464.1 Olea europaea HOM05D006875 ORTHO05D008416 9.7e-31 137.5 96 74.0
Sabra01G0103300 Salix brachista HOM05D006875 ORTHO05D008416 9.7e-31 137.5 220 42.3
arahy.Tifrunner.gnm1.ann1.7H2E39 Arachis hypogaea HOM05D006875 ORTHO05D008416 3.7e-30 135.6 176 50.0
arahy.Tifrunner.gnm1.ann1.J2I619 Arachis hypogaea HOM05D006875 ORTHO05D008416 3.7e-30 135.6 176 50.0
Cfa012555 Carpinus fangiana HOM05D006875 ORTHO05D008416 8.2e-30 134.4 175 46.9
Gohir.A08G152100 Gossypium hirsutum HOM05D006875 ORTHO05D008416 2.4e-29 132.9 175 47.4
VMungo1215G2146 Vigna mungo HOM05D006875 ORTHO05D008416 2.4e-29 132.9 170 48.8
SGA_v2.0_scaffold144G35866 Striga asiatica HOM05D006875 ORTHO05D008416 3.1e-29 132.5 98 70.4
Potri.003G099900 Populus trichocarpa HOM05D006875 ORTHO05D008416 6.9e-29 131.3 182 46.2
Lj2g0021598 Lotus japonicus HOM05D006875 ORTHO05D008416 9.0e-29 131.0 127 59.1
Eucgr.D02619 Eucalyptus grandis HOM05D006875 ORTHO05D008416 1.2e-28 130.6 174 45.4
CsaV3_3G030390 Cucumis sativus L. HOM05D006875 ORTHO05D008416 2.6e-28 129.4 179 43.0
Thecc.03G314400 Theobroma cacao HOM05D006875 ORTHO05D008416 1.3e-27 127.1 175 43.4
CDE05G0418 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 2.2e-27 126.3 124 58.1
HanXRQChr16g0510981 Helianthus annuus HOM05D006875 ORTHO05D008416 2.9e-27 125.9 178 46.1
unitig_0.g2213 Utricularia gibba HOM05D006875 ORTHO05D008416 2.9e-27 125.9 92 69.6
Ciclev10002495m.g Citrus clementina HOM05D006875 ORTHO05D008416 3.8e-27 125.6 177 44.6
Atru.chr6.1576 Acer truncatum HOM05D006875 ORTHO05D008416 6.5e-27 124.8 181 44.2
MELO3C022766.2 Cucumis melo HOM05D006875 ORTHO05D008416 6.5e-27 124.8 172 43.6
TWI23G0606 Tripterygium wilfordii HOM05D006875 ORTHO05D008416 2.5e-26 122.9 181 43.6
CANSAT21G2454 Cannabis sativa HOM05D006875 ORTHO05D008416 4.2e-26 122.1 173 42.8
FAN04G1681 Fragaria x ananassa HOM05D006875 ORTHO05D008416 5.5e-26 121.7 172 45.3
FAN08G3065 Fragaria x ananassa HOM05D006875 ORTHO05D008416 1.2e-25 120.6 172 45.3
Cpa.g.c33846 Carica papaya HOM05D006875 ORTHO05D008416 1.6e-25 120.2 145 47.6
FvH4_5g23590 Fragaria vesca HOM05D006875 ORTHO05D008416 2.1e-25 119.8 173 46.2
FAN13G1224 Fragaria x ananassa HOM05D006875 ORTHO05D008416 2.1e-25 119.8 172 45.3
FAN18G3946 Fragaria x ananassa HOM05D006875 ORTHO05D008416 2.1e-25 119.8 173 46.2
FAN18G3512 Fragaria x ananassa HOM05D006875 ORTHO05D008416 2.7e-25 119.4 173 46.2
Gorai.004G180500 Gossypium raimondii HOM05D006875 ORTHO05D008416 2.7e-25 119.4 169 43.8
Aqoxy3G02082 Aquilegia oxysepala HOM05D006875 ORTHO05D008416 7.9e-25 117.9 174 45.4
Manes.17G011100 Manihot esculenta HOM05D006875 ORTHO05D008416 8.7e-24 114.4 181 44.8
Os10g0579500 Oryza sativa ssp. japonica HOM05D006875 ORTHO05D008416 1.7e-22 110.2 95 62.1
PSO063G1678 Papaver somniferum HOM05D006875 ORTHO05D008416 1.7e-22 110.2 170 44.1
Hma1.2p1_0979F.1_g243510 Hydrangea macrophylla HOM05D006875 ORTHO05D008416 2.2e-22 109.8 175 40.6
PSO782G2435 Papaver somniferum HOM05D006875 ORTHO05D008416 2.2e-22 109.8 170 44.7
MD00G1000200 Malus domestica HOM05D006875 ORTHO05D008416 5.3e-21 105.1 179 39.7
Zm00001eb025290 Zea mays HOM05D006875 ORTHO05D008416 6.9e-21 104.8 149 45.6
COL.COLO4_16883 Corchorus olitorius HOM05D006875 ORTHO05D008416 4.5e-20 102.1 55 87.3
Sabra03G0067900 Salix brachista HOM05D006875 ORTHO05D008416 4.5e-20 102.1 93 58.1
vmacro14218 Vaccinium macrocarpon HOM05D006875 ORTHO05D008416 7.7e-20 101.3 251 33.9
Psat2g139680 Pisum sativum HOM05D006875 ORTHO05D008416 1.0e-19 100.9 145 40.7
HPP92_025490 Vanilla planifolia HOM05D006875 ORTHO05D008416 2.5e-18 96.3 72 70.8
Haze_08105 Corylus avellana HOM05D006875 ORTHO05D008416 3.9e-16 89.0 66 63.6
PGR031G1815 Punica granatum HOM05D006875 ORTHO05D008416 1.5e-15 87.0 140 41.4
ClCG07G002300 Citrullus lanatus HOM05D006875 ORTHO05D008416 2.0e-15 86.7 149 36.2
Haze_08111 Corylus avellana HOM05D006875 ORTHO05D008416 2.0e-15 86.7 147 39.5
Mapoly0025s0027 Marchantia polymorpha HOM05D006875 ORTHO05D008416 7.4e-15 84.7 67 61.2
Rhsim07G0136500 Rhododendron simsii HOM05D006875 ORTHO05D008416 9.7e-15 84.3 151 39.7
AagrBONN_evm.TU.Sc2ySwM_362.254 Anthoceros agrestis HOM05D006875 ORTHO05D008416 1.7e-14 83.6 72 58.3
Pp3c9_12060 Physcomitrium patens HOM05D006875 ORTHO05D008416 2.8e-14 82.8 67 58.2
QL12p000430 Quercus lobata HOM05D006875 ORTHO05D008416 1.1e-13 80.9 155 36.8
ECA233G1303 Erigeron canadensis HOM05D000321 ORTHO05D000204 6.9e-13 78.2 67 58.2
ATR0829G201 Amborella trichopoda HOM05D006875 ORTHO05D008416 2.0e-12 76.6 107 44.9
RcHm_v2.0_Chr1g0382651 Rosa chinensis HOM05D006875 ORTHO05D008416 7.7e-12 74.7 44 79.5
CDE11G0569 Ceratophyllum demersum HOM05D006875 ORTHO05D008416 1.0e-11 74.3 148 35.8
SHI45156 Sapria himalayana HOM05D006875 ORTHO05D008416 2.5e-10 69.7 76 47.4
Lsat_1_v5_gn_3_43041 Lactuca sativa HOM05D006875 ORTHO05D008416 4.7e-09 65.5 187 32.1
MD06G1023100 Malus domestica HOM05D006875 ORTHO05D008416 8.8e-08 61.2 147 34.0
SEGI_22250 Sequoiadendron giganteum HOM05D006875 ORTHO05D008416 2.0e-07 60.1 71 46.5
BcaB07g30436 Brassica carinata HOM05D000059 ORTHO05D091085 2.6e-07 59.7 147 33.3


User provided reference genes

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