Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0238 Capsella rubella HOM05D000355 ORTHO05D000227 4.2e-51 204.5 113 100.0
AL8G13040 Arabidopsis lyrata HOM05D000355 ORTHO05D000227 1.0e-33 146.7 115 78.3
Thhalv10001226m.g Eutrema salsugineum HOM05D000355 ORTHO05D000227 3.4e-32 141.7 115 69.6
Sp2g10520 Schrenkiella parvula HOM05D000355 ORTHO05D000227 1.7e-31 139.4 115 65.2
AT5G45630 Arabidopsis thaliana HOM05D000355 ORTHO05D000227 8.3e-31 137.1 118 70.3
CARHR176350 Cardamine hirsuta HOM05D000355 ORTHO05D000227 4.1e-30 134.8 112 67.9
A09p21830 Brassica napus HOM05D000355 ORTHO05D000227 1.7e-28 129.4 115 64.3
BcaB07g30878 Brassica carinata HOM05D000355 ORTHO05D000227 2.3e-28 129.0 118 65.3
BcaC04g21754 Brassica carinata HOM05D000355 ORTHO05D000227 1.6e-26 122.9 116 65.5
C09p27990 Brassica napus HOM05D000355 ORTHO05D000227 3.6e-26 121.7 120 64.2
BolC9t55663H Brassica oleracea HOM05D000355 ORTHO05D000227 3.6e-26 121.7 115 64.3
BraA09t37787Z Brassica rapa HOM05D000355 ORTHO05D000227 6.1e-26 120.9 116 64.7
Aa31LG9G7420 Aethionema arabicum HOM05D000355 ORTHO05D000227 6.6e-20 100.9 122 57.4
AL7G35180 Arabidopsis lyrata HOM05D000355 ORTHO05D000227 1.1e-19 100.1 113 54.0
BcaNung04025 Brassica carinata HOM05D000355 ORTHO05D000227 9.5e-19 97.1 113 53.1
AT4G18980 Arabidopsis thaliana HOM05D000355 ORTHO05D000227 1.6e-18 96.3 114 54.4
C01p13020 Brassica napus HOM05D000355 ORTHO05D000227 2.8e-18 95.5 114 52.6
BolC1t01277H Brassica oleracea HOM05D000355 ORTHO05D000227 2.8e-18 95.5 114 52.6
Sp7g17700 Schrenkiella parvula HOM05D000355 ORTHO05D000227 3.6e-18 95.1 113 54.0
A03p51670 Brassica napus HOM05D000355 ORTHO05D000227 6.2e-18 94.4 113 53.1
BraA03t14256Z Brassica rapa HOM05D000355 ORTHO05D000227 6.2e-18 94.4 113 53.1
Aa31LG6G1680 Aethionema arabicum HOM05D000355 ORTHO05D000227 1.8e-17 92.8 113 60.2
BraA01t01047Z Brassica rapa HOM05D000355 ORTHO05D000227 1.8e-17 92.8 115 52.2
CARHR225870 Cardamine hirsuta HOM05D000355 ORTHO05D000227 6.8e-17 90.9 114 50.9
Carub.0007s2219 Capsella rubella HOM05D000355 ORTHO05D000227 2.0e-16 89.4 117 48.7
A01p11000 Brassica napus HOM05D000355 ORTHO05D000227 3.4e-16 88.6 119 49.6
A08p14080 Brassica napus HOM05D000355 ORTHO05D000227 9.8e-16 87.0 114 50.0
BraA08t33402Z Brassica rapa HOM05D000355 ORTHO05D000227 1.3e-15 86.7 114 48.2
A08p24990 Brassica napus HOM05D000355 ORTHO05D000227 2.4e-14 82.4 141 43.3
BraA08t34454Z Brassica rapa HOM05D000355 ORTHO05D000227 2.4e-14 82.4 141 43.3
BcaB04g18515 Brassica carinata HOM05D000355 ORTHO05D000227 9.2e-14 80.5 112 46.4
BcaC01g00121 Brassica carinata HOM05D000355 ORTHO05D000227 1.6e-13 79.7 138 44.9
C03p75990 Brassica napus HOM05D000355 ORTHO05D000227 1.6e-13 79.7 138 44.9
BolC3t19852H Brassica oleracea HOM05D000355 ORTHO05D000227 1.6e-13 79.7 138 44.9
Thhalv10026806m.g Eutrema salsugineum HOM05D000355 ORTHO05D000227 1.6e-13 79.7 113 51.3
Manes.15G116100 Manihot esculenta HOM05D000355 ORTHO05D000227 2.0e-13 79.3 131 45.0
BcaB03g12166 Brassica carinata HOM05D000355 ORTHO05D000227 3.5e-13 78.6 138 44.2
Phvul.006G168600 Phaseolus vulgaris HOM05D000355 ORTHO05D000227 7.8e-13 77.4 117 44.4
BcaB04g18514 Brassica carinata HOM05D000355 ORTHO05D000227 1.0e-12 77.0 110 45.5
CARHR128400 Cardamine hirsuta HOM05D000355 ORTHO05D000227 1.3e-12 76.6 134 44.0
Thhalv10017404m.g Eutrema salsugineum HOM05D000355 ORTHO05D000227 5.0e-12 74.7 138 42.8
Manes.17G062700 Manihot esculenta HOM05D000355 ORTHO05D000227 5.0e-12 74.7 129 44.2
AT2G34340 Arabidopsis thaliana HOM05D000355 ORTHO05D000227 1.5e-11 73.2 137 41.6
AL4G30290 Arabidopsis lyrata HOM05D000355 ORTHO05D000227 2.5e-11 72.4 135 42.2
BcaC01g00587 Brassica carinata HOM05D000355 ORTHO05D000227 2.5e-11 72.4 117 52.1
BcaC02g11498 Brassica carinata HOM05D000355 ORTHO05D000227 2.5e-11 72.4 127 41.7
C03p81660 Brassica napus HOM05D000355 ORTHO05D000227 2.5e-11 72.4 117 52.1
BolC3t20436H Brassica oleracea HOM05D000355 ORTHO05D000227 2.5e-11 72.4 117 52.1
A05p11340 Brassica napus HOM05D000355 ORTHO05D000227 3.3e-11 72.0 128 41.4
BraA05t20083Z Brassica rapa HOM05D000355 ORTHO05D000227 3.3e-11 72.0 128 41.4
MBI06_g14253_MAGBIO Magnolia biondii HOM05D000355 ORTHO05D000227 3.3e-11 72.0 124 38.7
BcaB03g13870 Brassica carinata HOM05D000355 ORTHO05D000227 4.3e-11 71.6 134 42.5
Migut.H01394 Erythranthe guttata HOM05D000355 ORTHO05D000227 4.3e-11 71.6 126 39.7
Thhalv10009054m.g Eutrema salsugineum HOM05D000355 ORTHO05D000227 5.6e-11 71.2 142 40.8
MELO3C002696.2 Cucumis melo HOM05D000355 ORTHO05D000227 7.3e-11 70.9 142 35.9
BraA07t28844Z Brassica rapa HOM05D000355 ORTHO05D000227 9.5e-11 70.5 137 42.3
Sed0019223 Sechium edule HOM05D000355 ORTHO05D000227 9.5e-11 70.5 125 39.2
TWI09G0139 Tripterygium wilfordii HOM05D000355 ORTHO05D000227 9.5e-11 70.5 73 50.7
C04p14700 Brassica napus HOM05D000355 ORTHO05D000227 1.2e-10 70.1 128 41.4
BolC4t23049H Brassica oleracea HOM05D000355 ORTHO05D000227 1.2e-10 70.1 128 41.4
BcaB02g09559 Brassica carinata HOM05D000355 ORTHO05D000227 1.6e-10 69.7 129 42.6
C07p50170 Brassica napus HOM05D000355 ORTHO05D000227 1.6e-10 69.7 111 44.1
TPR.G4475 Trifolium pratense HOM05D000355 ORTHO05D000227 1.6e-10 69.7 119 41.2
A07p10440 Brassica napus HOM05D000355 ORTHO05D000227 2.1e-10 69.3 137 41.6
A09p36770 Brassica napus HOM05D000355 ORTHO05D000227 2.1e-10 69.3 139 45.3
BraA09t39193Z Brassica rapa HOM05D000355 ORTHO05D000227 2.1e-10 69.3 139 45.3
HanXRQChr04g0113361 Helianthus annuus HOM05D000355 ORTHO05D000227 2.1e-10 69.3 122 38.5
Sed0005577 Sechium edule HOM05D000355 ORTHO05D000227 2.1e-10 69.3 135 36.3
AT1G29640 Arabidopsis thaliana HOM05D000355 ORTHO05D000227 2.8e-10 68.9 141 37.6
Gohir.A06G198400 Gossypium hirsutum HOM05D000355 ORTHO05D000227 2.8e-10 68.9 125 40.8
THA.LOC104812655 Tarenaya hassleriana HOM05D000355 ORTHO05D000227 2.8e-10 68.9 132 38.6
C07p16070 Brassica napus HOM05D000355 ORTHO05D000227 3.6e-10 68.6 137 42.3
BolC7t42093H Brassica oleracea HOM05D000355 ORTHO05D000227 3.6e-10 68.6 137 42.3
CARHR028960 Cardamine hirsuta HOM05D000355 ORTHO05D000227 3.6e-10 68.6 142 44.4
BcaC05g26984 Brassica carinata HOM05D000355 ORTHO05D000227 4.7e-10 68.2 139 43.9
C05p28450 Brassica napus HOM05D000355 ORTHO05D000227 4.7e-10 68.2 139 43.9
BolC5t31570H Brassica oleracea HOM05D000355 ORTHO05D000227 4.7e-10 68.2 139 43.9
MD00G1093200 Malus domestica HOM05D000355 ORTHO05D000227 4.7e-10 68.2 148 35.1
CiPaw.10G098200 Carya illinoinensis HOM05D000355 ORTHO05D000227 6.2e-10 67.8 127 37.8
SGA_v2.0_scaffold1G00118 Striga asiatica HOM05D000355 ORTHO05D000227 6.2e-10 67.8 133 39.8
VMungo0540G1759 Vigna mungo HOM05D000355 ORTHO05D000227 6.2e-10 67.8 118 39.0
BcaC06g35446 Brassica carinata HOM05D000355 ORTHO05D000227 1.1e-09 67.0 137 41.6
C07p16080 Brassica napus HOM05D000355 ORTHO05D000227 1.1e-09 67.0 137 41.6
BolC7t45520H Brassica oleracea HOM05D000355 ORTHO05D000227 1.1e-09 67.0 110 43.6
CsaV3_1G032860 Cucumis sativus L. HOM05D000355 ORTHO05D000227 1.1e-09 67.0 146 32.9
Aa31LG6G6020 Aethionema arabicum HOM05D000355 ORTHO05D000227 1.4e-09 66.6 152 36.8
A04p26300 Brassica napus HOM05D000355 ORTHO05D000227 1.4e-09 66.6 143 38.5
Ca_00498_v3 Cicer arietinum L. HOM05D000355 ORTHO05D000227 1.4e-09 66.6 133 37.6
Glyma.13G222600 Glycine max HOM05D000355 ORTHO05D000227 1.4e-09 66.6 120 40.0
Lalb_Chr18g0055061 Lupinus albus HOM05D000355 ORTHO05D000227 1.4e-09 66.6 133 34.6
Thecc.06G159900 Theobroma cacao HOM05D000355 ORTHO05D000227 1.4e-09 66.6 144 34.7
BolC4t27837H Brassica oleracea HOM05D000355 ORTHO05D000227 1.8e-09 66.2 142 39.4
CiPaw.09G132200 Carya illinoinensis HOM05D000355 ORTHO05D000227 1.8e-09 66.2 127 40.9
Gohir.D06G205800 Gossypium hirsutum HOM05D000355 ORTHO05D000227 1.8e-09 66.2 125 40.0
Gorai.010G240100 Gossypium raimondii HOM05D000355 ORTHO05D000227 1.8e-09 66.2 125 40.0
Potri.011G076900 Populus trichocarpa HOM05D000355 ORTHO05D000227 1.8e-09 66.2 126 40.5
ClCG01G024130 Citrullus lanatus HOM05D000355 ORTHO05D000227 2.3e-09 65.9 145 35.9
Aqoxy1G01887 Aquilegia oxysepala HOM05D000355 ORTHO05D000227 3.1e-09 65.5 114 40.4
AL1G43470 Arabidopsis lyrata HOM05D000355 ORTHO05D000227 3.1e-09 65.5 140 36.4
C04p63700 Brassica napus HOM05D000355 ORTHO05D000227 3.1e-09 65.5 143 38.5
Cpa.g.sc17.164 Carica papaya HOM05D000355 ORTHO05D000227 3.1e-09 65.5 136 36.8
ECA236G3768 Erigeron canadensis HOM05D000355 ORTHO05D000227 3.1e-09 65.5 137 37.2
Prupe.4G072000 Prunus persica HOM05D000355 ORTHO05D000227 3.1e-09 65.5 140 36.4
Cfa021170 Carpinus fangiana HOM05D000355 ORTHO05D000227 4.0e-09 65.1 129 38.0
QL05p052752 Quercus lobata HOM05D000355 ORTHO05D000227 4.0e-09 65.1 132 35.6
Sabra11G0064000 Salix brachista HOM05D000355 ORTHO05D000227 4.0e-09 65.1 125 38.4
Sp4g16600 Schrenkiella parvula HOM05D000355 ORTHO05D000227 4.0e-09 65.1 148 37.2
Medtr2g018175 Medicago truncatula HOM05D000355 ORTHO05D000227 6.8e-09 64.3 129 34.9
Psat1g192560 Pisum sativum HOM05D000355 ORTHO05D000227 6.8e-09 64.3 133 36.1
ClCG03G007260 Citrullus lanatus HOM05D000355 ORTHO05D000227 8.9e-09 63.9 138 33.3
Gohir.D05G154500 Gossypium hirsutum HOM05D000355 ORTHO05D000227 8.9e-09 63.9 133 37.6
SalBow7G2054 Salvia bowleyana HOM05D000355 ORTHO05D000227 1.2e-08 63.5 121 37.2
THA.LOC104820624 Tarenaya hassleriana HOM05D000355 ORTHO05D000227 1.2e-08 63.5 140 38.6
Migut.M00972 Erythranthe guttata HOM05D000355 ORTHO05D000227 1.5e-08 63.2 134 38.8
Gohir.A05G152000 Gossypium hirsutum HOM05D000355 ORTHO05D000227 1.5e-08 63.2 130 40.0
PGR042G3548 Punica granatum HOM05D000355 ORTHO05D000227 1.5e-08 63.2 139 37.4
RcHm_v2.0_Chr5g0012841 Rosa chinensis HOM05D000355 ORTHO05D000227 1.5e-08 63.2 129 36.4
arahy.Tifrunner.gnm1.ann1.5DZ9UG Arachis hypogaea HOM05D000355 ORTHO05D000227 2.0e-08 62.8 127 40.2
Cc09_g10000 Coffea canephora HOM05D000355 ORTHO05D000227 2.0e-08 62.8 141 37.6
Lalb_Chr15g0086551 Lupinus albus HOM05D000355 ORTHO05D000227 2.0e-08 62.8 136 34.6
Duzib160G0443 Durio zibethinus HOM05D000355 ORTHO05D000227 2.6e-08 62.4 147 34.7
DCAR_007918 Daucus carota HOM05D000355 ORTHO05D000227 3.4e-08 62.0 138 37.0
SalBow7G4038 Salvia bowleyana HOM05D000355 ORTHO05D000227 3.4e-08 62.0 121 36.4
BcaB06g28750 Brassica carinata HOM05D000355 ORTHO05D000227 4.4e-08 61.6 142 36.6
Gorai.009G158800 Gossypium raimondii HOM05D000355 ORTHO05D000227 4.4e-08 61.6 133 36.8
Hma1.2p1_0015F.1_g010590 Hydrangea macrophylla HOM05D000355 ORTHO05D000227 4.4e-08 61.6 129 36.4
Lsat_1_v5_gn_7_26360 Lactuca sativa HOM05D000355 ORTHO05D000227 4.4e-08 61.6 129 35.7
Actinidia16758 Actinidia chinensis HOM05D000355 ORTHO05D000227 5.8e-08 61.2 134 36.6
CSS0021028 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 7.5e-08 60.8 136 33.1
CSS0041883 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 7.5e-08 60.8 136 33.1
DCAR_003957 Daucus carota HOM05D000355 ORTHO05D000227 7.5e-08 60.8 128 36.7
Rhsim02G0151500 Rhododendron simsii HOM05D000355 ORTHO05D000227 7.5e-08 60.8 126 39.7
ECA234G1686 Erigeron canadensis HOM05D000355 ORTHO05D000227 9.9e-08 60.5 137 35.0
Gohir.A10G032700 Gossypium hirsutum HOM05D000355 ORTHO05D000227 9.9e-08 60.5 150 36.7
MSTRG.16191 Avicennia marina HOM05D000355 ORTHO05D000227 1.3e-07 60.1 135 37.0
FAN21G0280 Fragaria x ananassa HOM05D000355 ORTHO05D000227 1.3e-07 60.1 130 33.8
Gohir.D06G140400 Gossypium hirsutum HOM05D000355 ORTHO05D000227 1.3e-07 60.1 148 35.8
Gorai.010G163800 Gossypium raimondii HOM05D000355 ORTHO05D000227 1.3e-07 60.1 148 35.8
Sed0025484 Sechium edule HOM05D000355 ORTHO05D000227 1.3e-07 60.1 83 45.8
COL.COLO4_22818 Corchorus olitorius HOM05D000355 ORTHO05D000227 1.7e-07 59.7 126 37.3
Lalb_Chr20g0117651 Lupinus albus HOM05D000355 ORTHO05D000227 1.7e-07 59.7 127 36.2
Duzib235G1481 Durio zibethinus HOM05D000355 ORTHO05D000227 2.2e-07 59.3 149 36.2
Carub.0001s2786 Capsella rubella HOM05D000355 ORTHO05D000227 3.7e-07 58.5 147 39.5
Lsat_1_v5_gn_4_47760 Lactuca sativa HOM05D000355 ORTHO05D000227 3.7e-07 58.5 125 36.0
Nn6g34398 Nelumbo nucifera HOM05D000355 ORTHO05D000227 3.7e-07 58.5 131 29.8
Oeu021539.1 Olea europaea HOM05D000355 ORTHO05D000227 3.7e-07 58.5 137 35.0
SalBow8G0398 Salvia bowleyana HOM05D000355 ORTHO05D000227 3.7e-07 58.5 123 35.8
SalBow8G4340 Salvia bowleyana HOM05D000355 ORTHO05D000227 3.7e-07 58.5 123 35.8
Sopen03g001900 Solanum pennellii HOM05D000355 ORTHO05D000227 3.7e-07 58.5 139 34.5
FvH4_3g06450 Fragaria vesca HOM05D000355 ORTHO05D000227 4.9e-07 58.2 130 33.1
TWI73G0934 Tripterygium wilfordii HOM05D000355 ORTHO05D000227 6.4e-07 57.8 135 34.8
Nitab4.5_0002507g0120 Nicotiana tabacum HOM05D000355 ORTHO05D000227 8.3e-07 57.4 127 35.4
Atru.chr10.1472 Acer truncatum HOM05D000355 ORTHO05D000227 1.1e-06 57.0 128 39.1
EL10Ac8g19818 Beta vulgaris HOM05D014368 ORTHO05D017256 1.1e-06 57.0 132 31.8
BcaB07g32554 Brassica carinata HOM05D000355 ORTHO05D000227 1.1e-06 57.0 75 49.3
MELO3C007178.2 Cucumis melo HOM05D000355 ORTHO05D000227 1.1e-06 57.0 79 48.1
Glyma.15G089600 Glycine max HOM05D000355 ORTHO05D000227 1.1e-06 57.0 113 36.3
Gorai.011G035200 Gossypium raimondii HOM05D000355 ORTHO05D000227 1.1e-06 57.0 151 33.8
Nitab4.5_0003746g0020 Nicotiana tabacum HOM05D000355 ORTHO05D000227 1.1e-06 57.0 136 37.5
Nitab4.5_0007383g0010 Nicotiana tabacum HOM05D000355 ORTHO05D000227 1.1e-06 57.0 136 36.0
Peaxi162Scf00308g00051 Petunia axillaris HOM05D000355 ORTHO05D000227 1.1e-06 57.0 135 34.1
Sp1g25540 Schrenkiella parvula HOM05D000355 ORTHO05D000227 1.1e-06 57.0 132 38.6
BcaC06g35448 Brassica carinata HOM05D028642 ORTHO05D000227 1.4e-06 56.6 117 39.3
MD10G1269600 Malus domestica HOM05D000355 ORTHO05D000227 1.4e-06 56.6 145 34.5
Peaxi162Scf00653g00015 Petunia axillaris HOM05D000355 ORTHO05D000227 1.4e-06 56.6 137 37.2
Gohir.D10G033400 Gossypium hirsutum HOM05D000355 ORTHO05D000227 1.9e-06 56.2 157 31.8
HanXRQChr17g0563551 Helianthus annuus HOM05D000355 ORTHO05D000227 1.9e-06 56.2 124 33.1
Oeu046827.1 Olea europaea HOM05D000355 ORTHO05D000227 1.9e-06 56.2 130 38.5
TAR627G0345 Trochodendron aralioides HOM05D000355 ORTHO05D000227 1.9e-06 56.2 138 34.8
Actinidia19475 Actinidia chinensis HOM05D000355 ORTHO05D000227 3.2e-06 55.5 134 33.6
TAR626G1976 Trochodendron aralioides HOM05D000355 ORTHO05D000227 4.1e-06 55.1 145 32.4
arahy.Tifrunner.gnm1.ann1.9T4F01 Arachis hypogaea HOM05D000355 ORTHO05D000227 5.4e-06 54.7 128 38.3
Carub.0004s1599 Capsella rubella HOM05D000355 ORTHO05D000227 5.4e-06 54.7 141 36.9
Sc24g0001950 Simmondsia chinensis HOM05D000355 ORTHO05D000227 5.4e-06 54.7 138 36.2
Gohir.A06G135204 Gossypium hirsutum HOM05D000355 ORTHO05D000227 7.1e-06 54.3 115 36.5
PSO675G3834 Papaver somniferum HOM05D000355 ORTHO05D000227 7.1e-06 54.3 108 36.1
CSS0049567 Camellia sinensis var. sinensis HOM05D000355 ORTHO05D000227 9.2e-06 53.9 136 37.5
Ciclev10017454m.g Citrus clementina HOM05D000355 ORTHO05D000227 9.2e-06 53.9 143 33.6
PGSC0003DMG400013466 Solanum tuberosum HOM05D000355 ORTHO05D000227 9.2e-06 53.9 141 31.9


User provided reference genes

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