Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0235 Capsella rubella HOM05D006968 ORTHO05D008748 6.6e-112 407.5 227 100.0
AL8G12990 Arabidopsis lyrata HOM05D006968 ORTHO05D008748 1.7e-99 366.3 227 90.7
AT5G45660 Arabidopsis thaliana HOM05D006968 ORTHO05D008748 1.9e-98 362.8 227 89.9
Thhalv10001012m.g Eutrema salsugineum HOM05D006968 ORTHO05D008748 1.2e-97 360.1 227 90.3
BcaC06g31531 Brassica carinata HOM05D006968 ORTHO05D008748 3.5e-97 358.6 228 88.6
A06p46470 Brassica napus HOM05D006968 ORTHO05D008748 3.9e-96 355.1 228 88.6
CARHR176320 Cardamine hirsuta HOM05D006968 ORTHO05D008748 5.1e-96 354.8 227 88.5
BraA06t27520Z Brassica rapa HOM05D006968 ORTHO05D008748 1.3e-94 350.1 228 87.3
BcaC06g34413 Brassica carinata HOM05D006968 ORTHO05D008748 2.1e-94 349.4 228 86.8
C07p28780 Brassica napus HOM05D006968 ORTHO05D008748 2.1e-94 349.4 228 86.8
BolC7t43414H Brassica oleracea HOM05D006968 ORTHO05D008748 1.2e-92 343.6 228 86.0
Sp2g10550 Schrenkiella parvula HOM05D006968 ORTHO05D008748 1.9e-90 336.3 228 86.0
Aa31LG9G7390 Aethionema arabicum HOM05D006968 ORTHO05D008748 5.1e-80 301.6 227 74.9
THA.LOC104798448 Tarenaya hassleriana HOM05D006968 ORTHO05D008748 4.2e-66 255.4 226 62.8
COL.COLO4_22824 Corchorus olitorius HOM05D006968 ORTHO05D008748 3.7e-46 189.1 221 47.1
Cpa.g.sc51.7 Carica papaya HOM05D006968 ORTHO05D008748 4.1e-45 185.7 211 48.3
Atru.chr10.1476 Acer truncatum HOM05D006968 ORTHO05D008748 5.9e-44 181.8 225 49.3
Duzib192G0634 Durio zibethinus HOM05D006968 ORTHO05D008748 5.9e-44 181.8 223 51.6
Potri.011G076600 Populus trichocarpa HOM05D006968 ORTHO05D008748 1.7e-43 180.3 190 50.5
Manes.17G062400 Manihot esculenta HOM05D006968 ORTHO05D008748 2.9e-43 179.5 186 49.5
Thecc.06G160300 Theobroma cacao HOM05D006968 ORTHO05D008748 5.0e-43 178.7 219 51.1
CSS0042403 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 8.5e-43 177.9 186 53.2
CANSAT35G0299 Cannabis sativa HOM05D006968 ORTHO05D008748 1.9e-42 176.8 194 48.5
Eucgr.E02869 Eucalyptus grandis HOM05D006968 ORTHO05D008748 1.9e-42 176.8 187 50.3
Sabra11G0063700 Salix brachista HOM05D006968 ORTHO05D008748 4.2e-42 175.6 192 48.4
MELO3C002693.2 Cucumis melo HOM05D006968 ORTHO05D008748 5.5e-42 175.3 210 47.6
CSS0021911 Camellia sinensis var. sinensis HOM05D006968 ORTHO05D008748 7.2e-42 174.9 186 52.7
Cfa001060 Carpinus fangiana HOM05D006968 ORTHO05D008748 1.2e-41 174.1 228 45.2
CsaV3_1G032900 Cucumis sativus L. HOM05D006968 ORTHO05D008748 1.6e-41 173.7 213 47.4
QL05p052638 Quercus lobata HOM05D006968 ORTHO05D008748 1.6e-41 173.7 207 46.9
Dinv32313 Davidia involucrata HOM05D006968 ORTHO05D008748 2.1e-41 173.3 186 48.4
TWI73G0998 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 2.1e-41 173.3 183 48.6
CiPaw.09G132600 Carya illinoinensis HOM05D006968 ORTHO05D008748 4.7e-41 172.2 217 46.1
FAN16G1632 Fragaria x ananassa HOM05D006968 ORTHO05D008748 5.2e-40 168.7 188 49.5
Gohir.A05G152300 Gossypium hirsutum HOM05D006968 ORTHO05D008748 5.2e-40 168.7 212 50.5
FvH4_3g06600 Fragaria vesca HOM05D006968 ORTHO05D008748 6.7e-40 168.3 188 48.9
FAN25G0438 Fragaria x ananassa HOM05D006968 ORTHO05D008748 6.7e-40 168.3 188 48.9
Haze_05452 Corylus avellana HOM05D006968 ORTHO05D008748 2.6e-39 166.4 223 44.4
Lsat_1_v5_gn_0_21300 Lactuca sativa HOM05D006968 ORTHO05D008748 2.6e-39 166.4 211 45.5
Sed0009046 Sechium edule HOM05D006968 ORTHO05D008748 2.6e-39 166.4 210 43.3
QL05p052648 Quercus lobata HOM05D006968 ORTHO05D008748 2.8e-38 162.9 197 46.7
Gohir.D05G154800 Gossypium hirsutum HOM05D006968 ORTHO05D008748 3.7e-38 162.5 212 49.1
Gorai.009G159100 Gossypium raimondii HOM05D006968 ORTHO05D008748 3.7e-38 162.5 212 49.1
RcHm_v2.0_Chr5g0012541 Rosa chinensis HOM05D006968 ORTHO05D008748 3.7e-38 162.5 220 45.0
Rhsim02G0123400 Rhododendron simsii HOM05D006968 ORTHO05D008748 4.8e-38 162.2 216 43.5
FAN11G1072 Fragaria x ananassa HOM05D006968 ORTHO05D008748 6.3e-38 161.8 191 47.6
ClCG03G007290 Citrullus lanatus HOM05D006968 ORTHO05D008748 8.2e-38 161.4 219 45.7
PGR042G2565 Punica granatum HOM05D006968 ORTHO05D008748 1.1e-37 161.0 185 44.9
TAR627G0978 Trochodendron aralioides HOM05D006968 ORTHO05D008748 4.1e-37 159.1 187 48.7
Glyma.13G222900 Glycine max HOM05D006968 ORTHO05D008748 1.2e-36 157.5 214 42.5
Ciclev10016662m.g Citrus clementina HOM05D006968 ORTHO05D008748 1.6e-36 157.1 213 46.0
Nn3g20980 Nelumbo nucifera HOM05D006968 ORTHO05D008748 1.6e-36 157.1 209 45.0
Lj2A313T77 Lonicera japonica HOM05D006968 ORTHO05D008748 5.9e-36 155.2 188 48.4
arahy.Tifrunner.gnm1.ann1.5H3RNB Arachis hypogaea HOM05D006968 ORTHO05D008748 1.0e-35 154.5 212 45.3
arahy.Tifrunner.gnm1.ann1.9V28L0 Arachis hypogaea HOM05D006968 ORTHO05D008748 1.0e-35 154.5 212 45.3
MD10G1270500 Malus domestica HOM05D006968 ORTHO05D008748 1.3e-35 154.1 220 43.2
VMungo0540G1786 Vigna mungo HOM05D006968 ORTHO05D008748 1.7e-35 153.7 211 41.2
MSTRG.16189 Avicennia marina HOM05D006968 ORTHO05D008748 3.8e-35 152.5 185 44.3
SalBow8G1131 Salvia bowleyana HOM05D006968 ORTHO05D008748 3.8e-35 152.5 185 44.3
Phvul.006G168900 Phaseolus vulgaris HOM05D006968 ORTHO05D008748 5.0e-35 152.1 214 40.7
Nitab4.5_0003913g0060 Nicotiana tabacum HOM05D006968 ORTHO05D008748 8.5e-35 151.4 220 39.1
Oeu042433.1 Olea europaea HOM05D006968 ORTHO05D008748 1.1e-34 151.0 217 39.6
SalBow8G0548 Salvia bowleyana HOM05D006968 ORTHO05D008748 1.1e-34 151.0 185 43.8
Nitab4.5_0010884g0010 Nicotiana tabacum HOM05D006968 ORTHO05D008748 1.5e-34 150.6 220 39.5
DCAR_007922 Daucus carota HOM05D000065 ORTHO05D000162 3.2e-34 149.4 207 44.9
Hund21573 Selenicereus undatus HOM05D006968 ORTHO05D008748 4.2e-34 149.1 224 42.0
CAN.G257.117 Capsicum annuum HOM05D006968 ORTHO05D008748 7.2e-34 148.3 209 40.2
HanXRQChr02g0055401 Helianthus annuus HOM05D006968 ORTHO05D008748 7.2e-34 148.3 227 42.3
Prupe.4G071300 Prunus persica HOM05D006968 ORTHO05D008748 9.4e-34 147.9 217 42.9
SGA_v2.0_scaffold1G00109 Striga asiatica HOM05D006968 ORTHO05D008748 2.1e-33 146.7 208 42.8
Lj6g0008479 Lotus japonicus HOM05D006968 ORTHO05D008748 4.7e-33 145.6 211 40.8
HanXRQChr02g0055391 Helianthus annuus HOM05D006968 ORTHO05D008748 1.0e-32 144.4 219 42.9
MD00G1093500 Malus domestica HOM05D006968 ORTHO05D008748 3.0e-32 142.9 211 41.2
Solyc02g071600.4 Solanum lycopersicum HOM05D006968 ORTHO05D008748 3.0e-32 142.9 212 37.7
Sc05g0006720 Simmondsia chinensis HOM05D000065 ORTHO05D000162 2.6e-31 139.8 189 45.0
Lalb_Chr18g0055011 Lupinus albus HOM05D006968 ORTHO05D008748 1.7e-30 137.1 202 41.1
EL10Ac8g19830 Beta vulgaris HOM05D006968 ORTHO05D008748 2.2e-30 136.7 209 41.6
Sopen02g020620 Solanum pennellii HOM05D006968 ORTHO05D008748 4.8e-30 135.6 213 36.2
FAN12G2652 Fragaria x ananassa HOM05D006968 ORTHO05D008748 6.3e-30 135.2 182 44.0
unitig_748.g7643 Utricularia gibba HOM05D001519 ORTHO05D008748 6.3e-30 135.2 211 39.3
Ah.02g125570 Amaranthus hybridus HOM05D006968 ORTHO05D008748 1.1e-29 134.4 210 38.6
PSO541G0278 Papaver somniferum HOM05D006968 ORTHO05D008748 1.8e-29 133.7 212 41.0
PSO675G0867 Papaver somniferum HOM05D006968 ORTHO05D008748 2.4e-29 133.3 212 40.6
Psat1g192720 Pisum sativum HOM05D006968 ORTHO05D008748 2.4e-29 133.3 186 36.6
Cc02_g16200 Coffea canephora HOM05D006968 ORTHO05D008748 9.1e-29 131.3 216 38.4
FvH4_4g34020 Fragaria vesca HOM05D006968 ORTHO05D008748 1.2e-28 131.0 182 43.4
Medtr2g018105 Medicago truncatula HOM05D006968 ORTHO05D008748 2.0e-28 130.2 189 36.5
Ca_00496_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 4.5e-28 129.0 206 35.4
Ca_30235_v3 Cicer arietinum L. HOM05D006968 ORTHO05D008748 4.5e-28 129.0 206 35.4
TPR.G4467 Trifolium pratense HOM05D006968 ORTHO05D008748 5.9e-28 128.6 202 37.1
PGSC0003DMG400007245 Solanum tuberosum HOM05D006968 ORTHO05D008748 1.0e-27 127.9 214 37.9
CiPaw.09G132700 Carya illinoinensis HOM05D006968 ORTHO05D008748 6.5e-27 125.2 287 34.1
Actinidia07663 Actinidia chinensis HOM05D006968 ORTHO05D008748 1.4e-24 117.5 111 54.1
Aqoxy1G01892 Aquilegia oxysepala HOM05D006968 ORTHO05D008748 1.4e-24 117.5 223 35.9
ECA248G0802 Erigeron canadensis HOM05D006968 ORTHO05D008748 1.2e-23 114.4 108 50.9
HPP92_009092 Vanilla planifolia HOM05D006968 ORTHO05D008748 1.2e-23 114.4 222 36.9
AUR62027636 Chenopodium quinoa HOM05D006968 ORTHO05D008748 1.3e-22 110.9 216 34.7
FAN22G0056 Fragaria x ananassa HOM05D006968 ORTHO05D008748 1.3e-22 110.9 203 37.9
CDE10G0144 Ceratophyllum demersum HOM05D000065 ORTHO05D008748 1.1e-21 107.8 193 36.8
Migut.M00982 Erythranthe guttata HOM05D006968 ORTHO05D008748 7.7e-20 101.7 150 42.0
SEGI_37019 Sequoiadendron giganteum HOM05D006968 ORTHO05D008748 1.0e-19 101.3 209 32.5
AUR62035842 Chenopodium quinoa HOM05D006968 ORTHO05D008748 1.7e-19 100.5 104 49.0
Actinidia39540 Actinidia chinensis HOM05D006968 ORTHO05D008748 2.9e-19 99.8 152 43.4
SGA_v2.0_scaffold18G08383 Striga asiatica HOM05D006968 ORTHO05D008748 1.5e-18 97.4 106 46.2
Lsat_1_v5_gn_1_112261 Lactuca sativa HOM05D006968 ORTHO05D008748 9.5e-18 94.7 87 51.7
SGA_v2.0_scaffold273G46455 Striga asiatica HOM05D006968 ORTHO05D008748 9.5e-18 94.7 101 47.5
Lalb_Chr18g0055041 Lupinus albus HOM05D006968 ORTHO05D008748 2.1e-17 93.6 214 31.3
Zm00001eb154290 Zea mays HOM05D006968 ORTHO05D008748 5.2e-16 89.0 185 37.3
GSVIVG01021311001 Vitis vinifera HOM05D006968 ORTHO05D008748 4.4e-15 85.9 87 49.4
Pp3c13_11400 Physcomitrium patens HOM05D006968 ORTHO05D008748 5.7e-15 85.5 186 29.0
Os01g0727900 Oryza sativa ssp. japonica HOM05D006968 ORTHO05D008748 1.3e-14 84.3 181 35.4
Zm00001eb045900 Zea mays HOM05D006968 ORTHO05D008748 8.3e-14 81.6 192 36.5
ECA248G3047 Erigeron canadensis HOM05D006968 ORTHO05D008748 3.9e-11 72.8 132 35.6
ATR0737G097 Amborella trichopoda HOM05D006968 ORTHO05D008748 3.3e-10 69.7 155 33.5
TWI53G1777 Tripterygium wilfordii HOM05D006968 ORTHO05D008748 4.3e-10 69.3 122 36.9
Haze_05450 Corylus avellana HOM05D006968 ORTHO05D164033 2.1e-09 67.0 59 61.0
GSVIVG01021310001 Vitis vinifera HOM05D006968 ORTHO05D008748 6.8e-08 62.0 66 48.5
SGA_v2.0_scaffold305G47958 Striga asiatica HOM05D000046 ORTHO05D405780 2.0e-07 60.5 56 50.0
SGA_v2.0_scaffold36G14429 Striga asiatica HOM05D003154 ORTHO05D003565 9.8e-07 58.2 54 48.1


User provided reference genes

Program Settings