Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0222 Capsella rubella HOM05D004193 ORTHO05D004862 1.3e-142 510.4 418 100.0
AL8G12840 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 2.4e-112 409.8 406 85.2
AT5G45770 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 3.3e-101 372.9 407 84.0
CARHR176210 Cardamine hirsuta HOM05D004193 ORTHO05D004862 7.7e-66 255.4 419 62.1
CARHR225610 Cardamine hirsuta HOM05D004193 ORTHO05D004862 1.2e-63 248.1 399 66.4
AL7G35490 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 7.5e-61 238.8 445 62.5
Thhalv10025247m.g Eutrema salsugineum HOM05D004193 ORTHO05D004862 2.2e-60 237.3 448 62.1
AT4G18760 Arabidopsis thaliana HOM05D004193 ORTHO05D004862 3.7e-60 236.5 445 62.2
BcaB04g18496 Brassica carinata HOM05D004193 ORTHO05D004862 1.6e-58 231.1 401 63.3
BcaC01g00565 Brassica carinata HOM05D004193 ORTHO05D004862 2.7e-58 230.3 401 63.8
C03p81450 Brassica napus HOM05D004193 ORTHO05D004862 2.7e-58 230.3 401 63.8
BolC3t20416H Brassica oleracea HOM05D004193 ORTHO05D004862 2.7e-58 230.3 401 63.8
A08p13970 Brassica napus HOM05D004193 ORTHO05D004862 7.7e-58 228.8 401 64.1
BraA08t33388Z Brassica rapa HOM05D004193 ORTHO05D004862 7.7e-58 228.8 401 64.1
THA.LOC104798441 Tarenaya hassleriana HOM05D004193 ORTHO05D004862 7.7e-58 228.8 413 66.6
Sp2g10680 Schrenkiella parvula HOM05D004193 ORTHO05D004862 1.1e-56 224.9 382 73.0
A09p21920 Brassica napus HOM05D006665 ORTHO05D008327 1.5e-56 224.6 420 65.2
Aa31LG6G1470 Aethionema arabicum HOM05D004193 ORTHO05D004862 1.9e-56 224.2 400 67.8
Sp7g17460 Schrenkiella parvula HOM05D004193 ORTHO05D004862 9.5e-56 221.9 400 68.0
BcaC04g21745 Brassica carinata HOM05D006665 ORTHO05D008327 1.2e-55 221.5 408 65.7
C09p28090 Brassica napus HOM05D006665 ORTHO05D008327 1.2e-55 221.5 408 65.7
BolC9t55679H Brassica oleracea HOM05D006665 ORTHO05D008327 1.0e-54 218.4 408 65.2
C01p12740 Brassica napus HOM05D004193 ORTHO05D004862 9.8e-53 211.8 405 66.9
BolC1t01251H Brassica oleracea HOM05D004193 ORTHO05D004862 9.8e-53 211.8 405 67.2
BcaB07g30869 Brassica carinata HOM05D006665 ORTHO05D008327 2.2e-52 210.7 410 66.3
BraA09t37795Z Brassica rapa HOM05D006665 ORTHO05D008327 4.9e-52 209.5 385 66.2
BcaNung05916 Brassica carinata HOM05D004193 ORTHO05D004862 3.1e-51 206.8 446 64.6
BcaC09g51473 Brassica carinata HOM05D004193 ORTHO05D004862 1.5e-48 198.0 394 66.8
Cpa.g.sc7.100 Carica papaya HOM05D004193 ORTHO05D004862 1.5e-48 198.0 418 62.7
Duzib160G0263 Durio zibethinus HOM05D004193 ORTHO05D004862 2.6e-45 187.2 399 59.6
A09p43700 Brassica napus HOM05D004193 ORTHO05D004862 5.8e-45 186.0 200 60.5
Gohir.D05G156801 Gossypium hirsutum HOM05D004193 ORTHO05D004862 4.9e-44 183.0 402 59.0
BraA01t01950Z Brassica rapa HOM05D004193 ORTHO05D004862 2.7e-42 177.2 194 60.8
Duzib235G0429 Durio zibethinus HOM05D004193 ORTHO05D004862 7.8e-42 175.6 403 60.3
Gohir.A05G154000 Gossypium hirsutum HOM05D004193 ORTHO05D004862 2.3e-41 174.1 402 59.7
TWI09G0810 Tripterygium wilfordii HOM05D004193 ORTHO05D004862 8.6e-41 172.2 405 56.8
Gohir.D06G138100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.5e-40 171.4 401 58.4
Sabra04G0038500 Salix brachista HOM05D004193 ORTHO05D004862 1.9e-40 171.0 400 59.5
Gohir.A06G132500 Gossypium hirsutum HOM05D004193 ORTHO05D004862 7.3e-40 169.1 399 58.4
Gorai.010G160400 Gossypium raimondii HOM05D004193 ORTHO05D004862 7.3e-40 169.1 407 57.2
Gohir.A10G035400 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.6e-39 167.9 346 62.1
Sc05g0007000 Simmondsia chinensis HOM05D004193 ORTHO05D004862 2.8e-39 167.2 398 54.5
QL05p048361 Quercus lobata HOM05D004193 ORTHO05D004862 4.7e-39 166.4 401 54.9
Atru.chr10.1586 Acer truncatum HOM05D004193 ORTHO05D004862 6.2e-39 166.0 398 57.0
ClCG01G023850 Citrullus lanatus HOM05D004193 ORTHO05D004862 6.2e-39 166.0 401 56.1
Manes.17G058300 Manihot esculenta HOM05D004193 ORTHO05D004862 1.8e-38 164.5 398 59.3
Thecc.06G167100 Theobroma cacao HOM05D004193 ORTHO05D004862 1.8e-38 164.5 399 61.2
Cfa000640 Carpinus fangiana HOM05D004193 ORTHO05D004862 2.3e-38 164.1 399 56.6
Potri.004G059500 Populus trichocarpa HOM05D004193 ORTHO05D004862 4.0e-38 163.3 398 59.8
Ca_17907_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 5.2e-38 162.9 402 58.2
Ciclev10015277m.g Citrus clementina HOM05D004193 ORTHO05D004862 6.8e-38 162.5 404 61.4
MELO3C007203.2 Cucumis melo HOM05D004193 ORTHO05D004862 8.9e-38 162.2 405 56.8
Sabra11G0057200 Salix brachista HOM05D004193 ORTHO05D004862 8.9e-38 162.2 399 61.7
ClCG03G007510 Citrullus lanatus HOM05D004193 ORTHO05D004862 1.2e-37 161.8 397 57.9
Haze_06190 Corylus avellana HOM05D004193 ORTHO05D004862 1.2e-37 161.8 397 56.4
MD10G1276600 Malus domestica HOM05D004193 ORTHO05D004862 1.2e-37 161.8 400 55.5
CiPaw.09G072000 Carya illinoinensis HOM05D004193 ORTHO05D004862 1.5e-37 161.4 404 54.2
Gorai.011G038000 Gossypium raimondii HOM05D004193 ORTHO05D004862 4.4e-37 159.8 396 60.6
Duzib192G1038 Durio zibethinus HOM05D004193 ORTHO05D004862 7.5e-37 159.1 397 61.2
DCAR_027987 Daucus carota HOM05D004193 ORTHO05D004862 9.8e-37 158.7 422 54.7
Medtr2g016620 Medicago truncatula HOM05D004193 ORTHO05D004862 2.9e-36 157.1 403 57.6
Sabra11G0053600 Salix brachista HOM05D004193 ORTHO05D004862 6.4e-36 156.0 397 61.5
Sed0000562 Sechium edule HOM05D004193 ORTHO05D004862 6.4e-36 156.0 401 58.9
Sed0018737 Sechium edule HOM05D004193 ORTHO05D004862 6.4e-36 156.0 412 52.9
CANSAT21G2377 Cannabis sativa HOM05D004193 ORTHO05D004862 8.3e-36 155.6 402 55.5
MELO3C002671.2 Cucumis melo HOM05D004193 ORTHO05D004862 8.3e-36 155.6 401 57.9
Gohir.D10G036100 Gossypium hirsutum HOM05D004193 ORTHO05D004862 1.1e-35 155.2 396 60.1
Lalb_Chr13g0295201 Lupinus albus HOM05D004193 ORTHO05D004862 1.9e-35 154.5 401 60.3
arahy.Tifrunner.gnm1.ann1.PWB2GB Arachis hypogaea HOM05D004193 ORTHO05D004862 2.4e-35 154.1 348 59.2
Lalb_Chr15g0086241 Lupinus albus HOM05D004193 ORTHO05D004862 2.4e-35 154.1 403 55.6
arahy.Tifrunner.gnm1.ann1.G2PW3U Arachis hypogaea HOM05D004193 ORTHO05D004862 3.2e-35 153.7 347 59.4
Nn3g21120 Nelumbo nucifera HOM05D004193 ORTHO05D004862 5.4e-35 152.9 401 55.9
CsaV3_1G033160 Cucumis sativus L. HOM05D004193 ORTHO05D004862 9.2e-35 152.1 397 57.9
Potri.011G069500 Populus trichocarpa HOM05D004193 ORTHO05D004862 1.6e-34 151.4 398 61.1
Nitab4.5_0000462g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 3.5e-34 150.2 405 54.6
MSTRG.16163 Avicennia marina HOM05D004193 ORTHO05D004862 4.6e-34 149.8 403 52.1
Lj4g0003170 Lotus japonicus HOM05D004193 ORTHO05D004862 4.6e-34 149.8 401 57.1
Lalb_Chr18g0054701 Lupinus albus HOM05D004193 ORTHO05D004862 6.0e-34 149.4 401 56.9
Nn1g04504 Nelumbo nucifera HOM05D004193 ORTHO05D004862 6.0e-34 149.4 402 54.7
arahy.Tifrunner.gnm1.ann1.XVCK9B Arachis hypogaea HOM05D004193 ORTHO05D004862 7.8e-34 149.1 398 61.1
Oeu039891.1 Olea europaea HOM05D004193 ORTHO05D004862 1.3e-33 148.3 403 54.8
Phvul.006G174100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 1.3e-33 148.3 401 53.6
SGA_v2.0_scaffold1G00068 Striga asiatica HOM05D004193 ORTHO05D004862 1.3e-33 148.3 403 59.1
Aqoxy1G02001 Aquilegia oxysepala HOM05D004193 ORTHO05D004862 1.7e-33 147.9 395 55.2
PGR042G3004 Punica granatum HOM05D004193 ORTHO05D004862 2.3e-33 147.5 402 58.5
FvH4_3g07430 Fragaria vesca HOM05D004193 ORTHO05D004862 6.6e-33 146.0 396 56.8
FAN11G0786 Fragaria x ananassa HOM05D004193 ORTHO05D004862 6.6e-33 146.0 396 56.8
Nitab4.5_0002458g0090 Nicotiana tabacum HOM05D004193 ORTHO05D004862 6.6e-33 146.0 403 53.8
Oeu041745.1 Olea europaea HOM05D004193 ORTHO05D004862 1.1e-32 145.2 406 53.4
Psat7g069000 Pisum sativum HOM05D004193 ORTHO05D004862 1.1e-32 145.2 398 56.5
TPR.G4517 Trifolium pratense HOM05D004193 ORTHO05D004862 1.1e-32 145.2 335 60.6
FAN25G3279 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.5e-32 144.8 396 57.1
Glyma.13G227700 Glycine max HOM05D004193 ORTHO05D004862 1.5e-32 144.8 416 56.0
Glyma.15G084800 Glycine max HOM05D004193 ORTHO05D004862 1.5e-32 144.8 399 58.1
Migut.M01015 Erythranthe guttata HOM05D004193 ORTHO05D004862 1.9e-32 144.4 409 53.3
VMungo0540G1249 Vigna mungo HOM05D004193 ORTHO05D004862 1.9e-32 144.4 399 58.4
FAN21G2979 Fragaria x ananassa HOM05D004193 ORTHO05D004862 2.5e-32 144.1 396 57.6
Eucgr.E02765 Eucalyptus grandis HOM05D004193 ORTHO05D004862 4.3e-32 143.3 364 56.6
Sed0009063 Sechium edule HOM05D004193 ORTHO05D004862 4.3e-32 143.3 408 51.5
DCAR_003990 Daucus carota HOM05D004193 ORTHO05D004862 5.6e-32 142.9 403 56.1
Zm00001eb153350 Zea mays HOM05D004193 ORTHO05D004862 5.6e-32 142.9 420 50.0
FAN16G2064 Fragaria x ananassa HOM05D004193 ORTHO05D004862 1.2e-31 141.7 396 57.1
Sopen03g002060 Solanum pennellii HOM05D004193 ORTHO05D004862 1.2e-31 141.7 401 57.1
AUR62027707 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.6e-31 141.4 402 56.5
Manes.16G042000 Manihot esculenta HOM05D004193 ORTHO05D004862 1.6e-31 141.4 194 45.9
Ah.09g233350 Amaranthus hybridus HOM05D004193 ORTHO05D004862 2.8e-31 140.6 404 55.7
Dinv32348 Davidia involucrata HOM05D004193 ORTHO05D004862 2.8e-31 140.6 331 58.0
PGSC0003DMG400026750 Solanum tuberosum HOM05D004193 ORTHO05D004862 2.8e-31 140.6 401 55.4
CAN.G866.27 Capsicum annuum HOM05D004193 ORTHO05D004862 6.2e-31 139.4 399 54.9
RcHm_v2.0_Chr5g0011431 Rosa chinensis HOM05D004193 ORTHO05D004862 6.2e-31 139.4 336 61.3
SalBow8G4302 Salvia bowleyana HOM05D004193 ORTHO05D004862 1.1e-30 138.7 402 57.5
Ca_00456_v3 Cicer arietinum L. HOM05D004193 ORTHO05D004862 1.4e-30 138.3 401 57.9
TPR.G6739 Trifolium pratense HOM05D004193 ORTHO05D004862 1.4e-30 138.3 401 56.4
TAR626G1977 Trochodendron aralioides HOM05D004193 ORTHO05D004862 1.8e-30 137.9 401 52.6
Peaxi162Scf00734g00053 Petunia axillaris HOM05D004193 ORTHO05D004862 2.3e-30 137.5 401 56.6
Dinv12762 Davidia involucrata HOM05D004193 ORTHO05D004862 4.0e-30 136.7 331 55.9
HPP92_011510 Vanilla planifolia HOM05D004193 ORTHO05D004862 4.0e-30 136.7 412 51.7
Lsat_1_v5_gn_7_24240 Lactuca sativa HOM05D004193 ORTHO05D004862 8.9e-30 135.6 401 52.6
Medtr8g086590 Medicago truncatula HOM05D004193 ORTHO05D004862 3.4e-29 133.7 401 57.9
ECA236G4320 Erigeron canadensis HOM05D004193 ORTHO05D004862 4.4e-29 133.3 401 52.6
PSO541G1278 Papaver somniferum HOM05D004193 ORTHO05D004862 1.3e-28 131.7 404 52.0
MSTRG.7422 Avicennia marina HOM05D004193 ORTHO05D004862 2.2e-28 131.0 404 49.3
PSO675G2498 Papaver somniferum HOM05D004193 ORTHO05D004862 3.7e-28 130.2 402 52.0
arahy.Tifrunner.gnm1.ann1.3H0WIW Arachis hypogaea HOM05D004193 ORTHO05D004862 6.4e-28 129.4 312 59.9
AUR62039461 Chenopodium quinoa HOM05D004193 ORTHO05D004862 1.1e-27 128.6 392 55.1
Phvul.002G240100 Phaseolus vulgaris HOM05D004193 ORTHO05D004862 2.4e-27 127.5 421 51.1
Ah.14g087050 Amaranthus hybridus HOM05D004193 ORTHO05D004862 3.2e-27 127.1 330 57.9
Cc02_g15470 Coffea canephora HOM05D004193 ORTHO05D004862 4.1e-27 126.7 339 56.9
HanXRQChr10g0316731 Helianthus annuus HOM05D004193 ORTHO05D004862 4.1e-27 126.7 401 54.6
Solyc02g072250.1 Solanum lycopersicum HOM05D004193 ORTHO05D004862 4.1e-27 126.7 412 53.4
PGSC0003DMG401028427 Solanum tuberosum HOM05D004193 ORTHO05D004862 7.1e-27 125.9 342 56.4
Lsat_1_v5_gn_1_108121 Lactuca sativa HOM05D004193 ORTHO05D004862 2.1e-26 124.4 401 54.1
CsaV3_6G051010 Cucumis sativus L. HOM05D004193 ORTHO05D004862 3.5e-26 123.6 336 58.6
Sopen02g021230 Solanum pennellii HOM05D004193 ORTHO05D004862 3.5e-26 123.6 412 52.9
Rhsim13G0188600 Rhododendron simsii HOM05D004193 ORTHO05D004862 7.8e-26 122.5 412 50.2
Nitab4.5_0000437g0190 Nicotiana tabacum HOM05D004193 ORTHO05D004862 5.1e-25 119.8 417 52.3
Lj6g0022713 Lotus japonicus HOM05D004193 ORTHO05D004862 1.2e-23 115.2 399 53.6
CAN.G411.59 Capsicum annuum HOM05D004193 ORTHO05D004862 1.1e-22 112.1 413 54.5
SEGI_04477 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 7.6e-21 105.9 408 48.8
arahy.Tifrunner.gnm1.ann1.EP0JTS Arachis hypogaea HOM05D004193 ORTHO05D004862 6.4e-20 102.8 261 65.9
Psat1g195760 Pisum sativum HOM05D004193 ORTHO05D004862 1.7e-17 94.7 291 63.2
ATR0012G050 Amborella trichopoda HOM05D004193 ORTHO05D004862 3.0e-17 94.0 394 50.0
MBI07_g09546_MAGBIO Magnolia biondii HOM05D004193 ORTHO05D004862 3.0e-17 94.0 269 61.0
CDE02G0812 Ceratophyllum demersum HOM05D004193 ORTHO05D004862 3.3e-16 90.5 108 46.3
Peaxi162Scf00371g00032 Petunia axillaris HOM05D004193 ORTHO05D004862 1.6e-15 88.2 329 50.5
unitig_8.g4593 Utricularia gibba HOM05D004193 ORTHO05D004862 3.6e-15 87.0 175 33.7
Lj1A1174T75 Lonicera japonica HOM05D004193 ORTHO05D004862 1.1e-14 85.5 285 63.9
BraA07t30082Z Brassica rapa HOM05D004193 ORTHO05D004862 1.4e-14 85.1 177 45.8
SEGI_20269 Sequoiadendron giganteum HOM05D004193 ORTHO05D004862 1.4e-14 85.1 203 34.5
CSS0049237 Camellia sinensis var. sinensis HOM05D004193 ORTHO05D004862 2.4e-14 84.3 266 60.2
SMO198G0069 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 2.4e-14 84.3 195 33.3
COL.COLO4_31255 Corchorus olitorius HOM05D004193 ORTHO05D004862 3.1e-14 84.0 255 72.2
SMO198G0035 Selaginella moellendorffii HOM05D004193 ORTHO05D004862 5.2e-14 83.2 202 34.7
VMungo1185G0001 Vigna mungo HOM05D004193 ORTHO05D004862 1.7e-12 78.2 137 43.1
HanXRQChr15g0480781 Helianthus annuus HOM05D004193 ORTHO05D004862 6.4e-12 76.3 335 54.9
Os01g0750400 Oryza sativa ssp. japonica HOM05D004193 ORTHO05D004862 3.2e-11 73.9 260 56.5
CDE06G0006 Ceratophyllum demersum HOM05D006665 ORTHO05D008327 6.0e-10 69.7 348 32.8
Prupe.4G065600 Prunus persica HOM05D004193 ORTHO05D004862 2.3e-09 67.8 402 29.6
Solyc03g006050.4 Solanum lycopersicum HOM05D004193 ORTHO05D004862 2.3e-09 67.8 129 38.0
AL2G35820 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 3.0e-09 67.4 45 75.6
AL6G39660 Arabidopsis lyrata HOM05D004193 ORTHO05D004862 3.0e-09 67.4 45 75.6
Glyma.05G159900 Glycine max HOM05D004193 ORTHO05D004862 7.3e-08 62.8 108 43.5
Actinidia35595 Actinidia chinensis HOM05D004193 ORTHO05D004862 6.2e-07 59.7 102 37.3
Nitab4.5_0008526g0040 Nicotiana tabacum HOM05D004193 ORTHO05D004862 1.1e-06 58.9 94 39.4
HanXRQChr09g0243731 Helianthus annuus HOM05D004193 ORTHO05D004862 5.3e-06 56.6 48 54.2
AagrBONN_evm.TU.Sc2ySwM_362.2880 Anthoceros agrestis HOM05D004193 ORTHO05D004862 6.9e-06 56.2 226 29.6
HanXRQChr09g0245841 Helianthus annuus HOM05D004193 ORTHO05D004862 6.9e-06 56.2 46 56.5


User provided reference genes

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