Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0161 Capsella rubella HOM05D010376 ORTHO05D006663 1.2e-33 146.0 73 100.0
AT5G46295 Arabidopsis thaliana HOM05D010376 ORTHO05D006663 9.1e-23 109.8 72 81.9
BcaC03g16844 Brassica carinata HOM05D010376 ORTHO05D006663 1.2e-22 109.4 71 81.7
BcaC03g16845 Brassica carinata HOM05D010376 ORTHO05D006663 4.5e-22 107.5 71 80.3
C02p47270 Brassica napus HOM05D010376 ORTHO05D006663 4.5e-22 107.5 71 80.3
A02p29830 Brassica napus HOM05D010376 ORTHO05D006663 7.7e-22 106.7 71 80.3
BcaC06g31483 Brassica carinata HOM05D010376 ORTHO05D006663 1.0e-21 106.3 72 80.6
Thhalv10001093m.g Eutrema salsugineum HOM05D010376 ORTHO05D006663 6.6e-21 103.6 72 77.8
BcaB07g30843 Brassica carinata HOM05D010376 ORTHO05D006663 8.6e-21 103.2 72 77.8
CARHR175490 Cardamine hirsuta HOM05D010376 ORTHO05D006663 8.6e-21 103.2 67 80.6
C07p29520 Brassica napus HOM05D010376 ORTHO05D006663 1.1e-20 102.8 72 77.8
BolC7t43501H Brassica oleracea HOM05D010376 ORTHO05D006663 1.1e-20 102.8 72 77.8
A06p46010 Brassica napus HOM05D010376 ORTHO05D006663 5.5e-20 100.5 72 76.4
BraA06t27465Z Brassica rapa HOM05D010376 ORTHO05D006663 5.5e-20 100.5 72 76.4
BolC9t57226H Brassica oleracea HOM05D010376 ORTHO05D006663 1.7e-16 89.0 75 68.0
BolC9t55718H Brassica oleracea HOM05D010376 ORTHO05D006663 3.7e-16 87.8 68 67.6
THA.LOC104806122 Tarenaya hassleriana HOM05D010376 ORTHO05D006663 1.1e-12 76.3 59 64.4
Thecc.06G153400 Theobroma cacao HOM05D006911 ORTHO05D006663 2.2e-08 62.0 59 54.2
Gohir.A06G197500 Gossypium hirsutum HOM05D006911 ORTHO05D006663 2.9e-08 61.6 59 52.5
QL05p059038 Quercus lobata HOM05D006911 ORTHO05D006663 2.9e-08 61.6 74 44.6
COL.COLO4_24713 Corchorus olitorius HOM05D006911 ORTHO05D006663 3.7e-08 61.2 80 45.0
TWI09G0032 Tripterygium wilfordii HOM05D006911 ORTHO05D006663 3.7e-08 61.2 69 49.3
ClCG03G007000 Citrullus lanatus HOM05D006911 ORTHO05D006663 6.4e-08 60.5 74 44.6
COL.COLO4_38300 Corchorus olitorius HOM05D006911 ORTHO05D006663 6.4e-08 60.5 59 52.5
Gohir.D05G152400 Gossypium hirsutum HOM05D006911 ORTHO05D006663 8.3e-08 60.1 70 45.7
Gohir.D06G205000 Gossypium hirsutum HOM05D006911 ORTHO05D006663 8.3e-08 60.1 59 50.8
A09p22230 Brassica napus HOM05D010376 ORTHO05D006663 1.1e-07 59.7 72 55.6
Glyma.08G083800 Glycine max HOM05D006911 ORTHO05D006663 3.2e-07 58.2 59 50.8
Lj4g0007682 Lotus japonicus HOM05D006911 ORTHO05D006663 3.2e-07 58.2 59 49.2
BolC2t10768H Brassica oleracea HOM05D010376 ORTHO05D006663 4.1e-07 57.8 71 52.1
CSS0014266 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 4.1e-07 57.8 69 43.5
CSS0033096 Camellia sinensis var. sinensis HOM05D006911 ORTHO05D006663 4.1e-07 57.8 69 43.5
Gohir.A05G149800 Gossypium hirsutum HOM05D006911 ORTHO05D006663 5.4e-07 57.4 59 49.2
Gohir.A10G039300 Gossypium hirsutum HOM05D006911 ORTHO05D006663 5.4e-07 57.4 61 49.2
Gorai.010G239100 Gossypium raimondii HOM05D006911 ORTHO05D006663 5.4e-07 57.4 59 49.2
Medtr4g094630 Medicago truncatula HOM05D006911 ORTHO05D006663 5.4e-07 57.4 76 46.1
Nn4g26517 Nelumbo nucifera HOM05D006911 ORTHO05D006663 5.4e-07 57.4 47 55.3
Gohir.D10G040100 Gossypium hirsutum HOM05D006911 ORTHO05D006663 7.0e-07 57.0 61 49.2
Gorai.011G042200 Gossypium raimondii HOM05D006911 ORTHO05D006663 7.0e-07 57.0 61 49.2
BraA09t37827Z Brassica rapa HOM05D010376 ORTHO05D006663 1.2e-06 56.2 51 62.7
Glyma.05G129200 Glycine max HOM05D006911 ORTHO05D006663 1.2e-06 56.2 70 44.3
Potri.004G131200 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.2e-06 56.2 78 46.2
Potri.011G079900 Populus trichocarpa HOM05D006911 ORTHO05D006663 1.2e-06 56.2 55 50.9
Ciclev10033778m.g Citrus clementina HOM05D006911 ORTHO05D006663 1.6e-06 55.8 50 54.0
THA.LOC104800829 Tarenaya hassleriana HOM05D006911 ORTHO05D006663 2.7e-06 55.1 51 47.1
Gorai.009G156500 Gossypium raimondii HOM05D006911 ORTHO05D006663 3.5e-06 54.7 56 48.2
Sed0015743 Sechium edule HOM05D006911 ORTHO05D006663 3.5e-06 54.7 71 42.3
CiPaw.09G126200 Carya illinoinensis HOM05D006911 ORTHO05D006663 4.6e-06 54.3 69 46.4
Ciclev10017350m.g Citrus clementina HOM05D006911 ORTHO05D006663 4.6e-06 54.3 59 49.2
Lalb_Chr07g0188701 Lupinus albus HOM05D006911 ORTHO05D006663 4.6e-06 54.3 79 40.5
Thecc.01G170800 Theobroma cacao HOM05D006911 ORTHO05D006663 4.6e-06 54.3 47 53.2
Medtr4g094635 Medicago truncatula HOM05D006911 ORTHO05D006663 6.0e-06 53.9 80 45.0
Medtr5g091310 Medicago truncatula HOM05D006911 ORTHO05D006663 6.0e-06 53.9 73 39.7
Sed0000672 Sechium edule HOM05D006911 ORTHO05D006663 6.0e-06 53.9 73 41.1


User provided reference genes

Program Settings