Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0107 Capsella rubella HOM05D005450 ORTHO05D006880 5.3e-250 867.5 512 100.0
AL8G11490 Arabidopsis lyrata HOM05D005450 ORTHO05D006880 3.4e-225 785.0 517 87.0
AT5G46840 Arabidopsis thaliana HOM05D005450 ORTHO05D006880 2.5e-215 752.3 514 86.6
Thhalv10000858m.g Eutrema salsugineum HOM05D005450 ORTHO05D006880 7.0e-194 681.0 527 78.6
Sp2g11640 Schrenkiella parvula HOM05D005450 ORTHO05D006880 1.5e-191 673.3 529 76.9
CARHR174610 Cardamine hirsuta HOM05D005450 ORTHO05D006880 7.2e-183 644.4 518 79.9
BcaC06g31440 Brassica carinata HOM05D005450 ORTHO05D006880 6.3e-179 631.3 518 77.0
A06p45580 Brassica napus HOM05D005450 ORTHO05D006880 2.9e-176 622.5 519 75.9
BolC7t43556H Brassica oleracea HOM05D005450 ORTHO05D006880 6.6e-176 621.3 521 76.0
BcaC06g34338 Brassica carinata HOM05D005450 ORTHO05D006880 1.5e-175 620.2 521 75.8
C07p30200 Brassica napus HOM05D005450 ORTHO05D006880 1.5e-175 620.2 521 75.8
BraA06t27430Z Brassica rapa HOM05D005450 ORTHO05D006880 2.5e-175 619.4 519 75.9
Aa31LG9G6020 Aethionema arabicum HOM05D005450 ORTHO05D006880 3.4e-156 555.8 534 66.7
THA.LOC104806699 Tarenaya hassleriana HOM05D005450 ORTHO05D006880 1.8e-133 480.3 540 57.4
Duzib205G1163 Durio zibethinus HOM05D005450 ORTHO05D006880 2.1e-118 430.3 543 56.0
Cpa.g.c28481.1 Carica papaya HOM05D005450 ORTHO05D006880 1.8e-117 427.2 566 51.4
TWI81G0857 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 2.5e-114 416.8 562 50.5
VMungo1215G2703 Vigna mungo HOM05D005450 ORTHO05D006880 9.3e-114 414.8 551 51.5
Potri.003G093900 Populus trichocarpa HOM05D005450 ORTHO05D006880 1.3e-112 411.0 527 52.8
Potri.001G140300 Populus trichocarpa HOM05D005450 ORTHO05D006880 2.3e-112 410.2 527 52.9
Gohir.A12G207500 Gossypium hirsutum HOM05D005450 ORTHO05D006880 8.7e-112 408.3 530 54.3
Gorai.008G225500 Gossypium raimondii HOM05D005450 ORTHO05D006880 1.1e-111 407.9 531 54.0
Sabra01G0109200 Salix brachista HOM05D005450 ORTHO05D006880 1.1e-111 407.9 538 52.4
Gohir.D12G209900 Gossypium hirsutum HOM05D005450 ORTHO05D006880 5.7e-111 405.6 531 53.9
Thecc.03G305800 Theobroma cacao HOM05D005450 ORTHO05D006880 2.1e-110 403.7 551 50.6
Glyma.01G016900 Glycine max HOM05D005450 ORTHO05D006880 4.8e-110 402.5 521 50.9
Manes.15G193000 Manihot esculenta HOM05D005450 ORTHO05D006880 5.9e-108 395.6 567 46.9
Phvul.002G139900 Phaseolus vulgaris HOM05D005450 ORTHO05D006880 5.0e-107 392.5 540 50.4
MD06G1037000 Malus domestica HOM05D005450 ORTHO05D006880 1.4e-106 391.0 558 49.8
MD16G1272400 Malus domestica HOM05D005450 ORTHO05D006880 3.2e-106 389.8 559 48.3
Prupe.5G032300 Prunus persica HOM05D005450 ORTHO05D006880 1.6e-105 387.5 568 47.9
FAN08G0023 Fragaria x ananassa HOM05D005450 ORTHO05D006880 6.1e-105 385.6 535 50.1
FAN18G2323 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.0e-104 384.8 550 49.6
TWI60G0421 Tripterygium wilfordii HOM05D005450 ORTHO05D006880 1.0e-104 384.8 567 48.9
Peaxi162Scf00170g01229 Petunia axillaris HOM05D005450 ORTHO05D006880 1.3e-104 384.4 529 49.3
CiPaw.11G095800 Carya illinoinensis HOM05D005450 ORTHO05D006880 2.3e-104 383.6 404 58.7
FvH4_5g22460 Fragaria vesca HOM05D005450 ORTHO05D006880 3.9e-104 382.9 550 49.6
FAN18G0707 Fragaria x ananassa HOM05D005450 ORTHO05D006880 3.9e-104 382.9 550 49.6
FAN13G0945 Fragaria x ananassa HOM05D005450 ORTHO05D006880 6.7e-104 382.1 535 49.7
PGR031G1299 Punica granatum HOM05D005450 ORTHO05D006880 1.1e-103 381.3 587 49.9
Glyma.09G205900 Glycine max HOM05D005450 ORTHO05D006880 1.9e-103 380.6 529 53.9
Aqoxy3G02278 Aquilegia oxysepala HOM05D005450 ORTHO05D006880 7.4e-103 378.6 398 57.0
CANSAT21G1200 Cannabis sativa HOM05D005450 ORTHO05D006880 6.3e-102 375.6 527 49.9
Cc08_g03160 Coffea canephora HOM05D005450 ORTHO05D006880 6.3e-102 375.6 543 48.1
FAN04G1305 Fragaria x ananassa HOM05D005450 ORTHO05D006880 1.1e-101 374.8 544 47.6
RcHm_v2.0_Chr7g0210251 Rosa chinensis HOM05D005450 ORTHO05D006880 1.1e-101 374.8 571 47.1
Hma1.2p1_0303F.1_g118850 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 2.4e-101 373.6 553 48.6
Nn3g19446 Nelumbo nucifera HOM05D005450 ORTHO05D006880 2.4e-101 373.6 391 59.6
Actinidia03357 Actinidia chinensis HOM05D005450 ORTHO05D006880 5.3e-101 372.5 404 56.4
Hund11224 Selenicereus undatus HOM05D005450 ORTHO05D006880 6.9e-101 372.1 536 48.3
vmacro00310 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 1.2e-100 371.3 398 57.0
MSTRG.1990 Avicennia marina HOM05D005450 ORTHO05D006880 5.9e-100 369.0 552 46.0
DCAR_008245 Daucus carota HOM05D005450 ORTHO05D006880 7.7e-100 368.6 562 47.5
Solyc08g076660.3 Solanum lycopersicum HOM05D005450 ORTHO05D006880 2.9e-99 366.7 578 46.0
SGA_v2.0_scaffold6G03148 Striga asiatica HOM05D005450 ORTHO05D001776 8.5e-99 365.2 407 57.0
arahy.Tifrunner.gnm1.ann1.95XRJP Arachis hypogaea HOM05D005450 ORTHO05D006880 1.1e-98 364.8 555 46.8
arahy.Tifrunner.gnm1.ann1.M4GMJK Arachis hypogaea HOM05D005450 ORTHO05D006880 1.1e-98 364.8 555 46.8
TAR375G0838 Trochodendron aralioides HOM05D005450 ORTHO05D006880 1.9e-98 364.0 399 56.9
Sed0009079 Sechium edule HOM05D005450 ORTHO05D006880 2.5e-98 363.6 539 46.2
Dinv25238 Davidia involucrata HOM05D005450 ORTHO05D006880 7.2e-98 362.1 403 58.1
Actinidia25982 Actinidia chinensis HOM05D005450 ORTHO05D006880 9.4e-98 361.7 394 55.3
Lalb_Chr05g0215901 Lupinus albus HOM05D005450 ORTHO05D006880 9.4e-98 361.7 583 44.9
EL10Ac5g12080 Beta vulgaris HOM05D005450 ORTHO05D006880 1.6e-97 360.9 532 48.7
CSS0031650 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.1e-97 360.5 414 55.8
PGSC0003DMG400017545 Solanum tuberosum HOM05D005450 ORTHO05D006880 2.1e-97 360.5 578 45.5
Hma1.2p1_0303F.1_g118860 Hydrangea macrophylla HOM05D005450 ORTHO05D006880 2.7e-97 360.1 357 61.6
CSS0005386 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.4e-96 357.8 414 55.6
Ciclev10014807m.g Citrus clementina HOM05D005450 ORTHO05D006880 3.0e-96 356.7 561 44.7
HanXRQChr13g0395441 Helianthus annuus HOM05D005450 ORTHO05D006880 3.0e-96 356.7 552 46.2
QL12p004713 Quercus lobata HOM05D005450 ORTHO05D006880 3.9e-96 356.3 392 55.6
Migut.E00784 Erythranthe guttata HOM05D005450 ORTHO05D006880 5.1e-96 355.9 537 46.6
Lj2A234T41 Lonicera japonica HOM05D005450 ORTHO05D006880 1.1e-95 354.8 513 47.4
Lsat_1_v5_gn_6_4021 Lactuca sativa HOM05D005450 ORTHO05D006880 3.3e-95 353.2 542 46.3
Sopen08g025210 Solanum pennellii HOM05D005450 ORTHO05D006880 3.3e-95 353.2 575 44.9
CsaV3_3G001550 Cucumis sativus L. HOM05D005450 ORTHO05D006880 7.4e-95 352.1 562 45.7
Eucgr.D02212 Eucalyptus grandis HOM05D005450 ORTHO05D006880 1.7e-94 350.9 395 55.7
Nitab4.5_0002203g0010 Nicotiana tabacum HOM05D005450 ORTHO05D006880 1.1e-93 348.2 537 46.6
MELO3C013841.2 Cucumis melo HOM05D005450 ORTHO05D006880 1.4e-93 347.8 545 47.0
ECA233G1178 Erigeron canadensis HOM05D005450 ORTHO05D006880 1.4e-93 347.8 518 45.4
Sc22g0001610 Simmondsia chinensis HOM05D005450 ORTHO05D006880 1.8e-93 347.4 560 45.7
TPR.G8114 Trifolium pratense HOM05D005450 ORTHO05D006880 1.8e-93 347.4 533 47.8
PSO782G2687 Papaver somniferum HOM05D005450 ORTHO05D006880 2.4e-93 347.1 422 51.7
Haze_08190 Corylus avellana HOM05D005450 ORTHO05D006880 6.9e-93 345.5 407 54.5
Lj2g0023622 Lotus japonicus HOM05D005450 ORTHO05D006880 9.1e-93 345.1 527 50.1
COL.COLO4_16985 Corchorus olitorius HOM05D005450 ORTHO05D006880 1.2e-92 344.7 523 47.4
unitig_699.g19789 Utricularia gibba HOM05D005450 ORTHO05D001249 1.2e-92 344.7 539 45.3
MBI04_g05750_MAGBIO Magnolia biondii HOM05D005450 ORTHO05D006880 1.0e-91 341.7 388 54.6
Medtr5g029900 Medicago truncatula HOM05D005450 ORTHO05D006880 1.0e-91 341.7 525 47.6
AUR62018696 Chenopodium quinoa HOM05D005450 ORTHO05D006880 1.3e-91 341.3 500 50.4
Rhsim11G0018700 Rhododendron simsii HOM05D005450 ORTHO05D006880 2.2e-91 340.5 396 54.5
CSS0022331 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 2.9e-91 340.1 578 45.2
ClCG10G001470 Citrullus lanatus HOM05D005450 ORTHO05D006880 2.9e-91 340.1 589 44.8
GSVIVG01013130001 Vitis vinifera HOM05D005450 ORTHO05D006880 3.8e-91 339.7 459 48.6
PSO063G4121 Papaver somniferum HOM05D005450 ORTHO05D006880 6.5e-91 339.0 397 52.1
Ca_25196_v3 Cicer arietinum L. HOM05D005450 ORTHO05D006880 4.2e-90 336.3 565 49.0
Nitab4.5_0000353g0110 Nicotiana tabacum HOM05D005450 ORTHO05D006880 1.6e-89 334.3 557 46.5
HanXRQChr04g0099011 Helianthus annuus HOM05D005450 ORTHO05D006880 2.3e-88 330.5 550 45.1
Psat2g137240 Pisum sativum HOM05D005450 ORTHO05D006880 4.4e-87 326.2 542 43.5
AUR62007307 Chenopodium quinoa HOM05D005450 ORTHO05D006880 3.7e-86 323.2 528 47.3
Atru.chr6.1648 Acer truncatum HOM05D005450 ORTHO05D006880 2.0e-84 317.4 514 47.5
Ah.12g055200 Amaranthus hybridus HOM05D005450 ORTHO05D006880 5.9e-84 315.8 458 47.2
HPP92_020907 Vanilla planifolia HOM05D005450 ORTHO05D006880 3.8e-83 313.2 392 51.3
Zm00001eb210550 Zea mays HOM05D005450 ORTHO05D006880 1.8e-80 304.3 498 45.4
Os03g0854300 Oryza sativa ssp. japonica HOM05D005450 ORTHO05D006880 3.3e-79 300.1 500 44.4
ATR0665G143 Amborella trichopoda HOM05D005450 ORTHO05D006880 1.7e-78 297.7 335 53.1
Lalb_Chr16g0381251 Lupinus albus HOM05D005450 ORTHO05D006880 4.8e-78 296.2 420 49.5
vmacro14185 Vaccinium macrocarpon HOM05D005450 ORTHO05D006880 4.8e-78 296.2 349 52.4
CDE11G1012 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 8.2e-78 295.4 528 43.2
Sabra03G0063000 Salix brachista HOM05D005450 ORTHO05D006880 1.3e-75 288.1 527 43.8
Rhsim07G0129900 Rhododendron simsii HOM05D005450 ORTHO05D006880 1.1e-74 285.0 364 51.1
Actinidia14788 Actinidia chinensis HOM05D005450 ORTHO05D006880 4.0e-72 276.6 410 46.6
BcaC03g16894 Brassica carinata HOM05D005450 ORTHO05D006880 5.9e-52 209.5 198 63.1
CSS0028579 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 3.9e-51 206.8 141 72.3
Aa31sc427G40 Aethionema arabicum HOM05D005450 ORTHO05D006880 7.3e-50 202.6 186 68.3
Pp3c17_19260 Physcomitrium patens HOM05D005450 ORTHO05D006880 1.5e-47 194.9 340 41.5
AagrBONN_evm.TU.Sc2ySwM_228.2336 Anthoceros agrestis HOM05D005450 ORTHO05D006880 2.6e-47 194.1 373 38.9
Mapoly0168s0008 Marchantia polymorpha HOM05D005450 ORTHO05D006880 2.9e-46 190.7 410 36.3
CSS0022748 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 6.4e-46 189.5 132 71.2
CDE11G0708 Ceratophyllum demersum HOM05D005450 ORTHO05D006880 1.2e-44 185.3 265 41.5
SEGI_20635 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 4.6e-44 183.3 320 41.6
BcaC03g16897 Brassica carinata HOM05D005450 ORTHO05D006880 6.2e-41 172.9 213 52.1
BolC2t10828H Brassica oleracea HOM05D005450 ORTHO05D006880 1.4e-40 171.8 204 53.4
CBR_g19667 Chara braunii HOM05D005450 ORTHO05D006880 2.3e-40 171.0 341 38.4
CSS0005944 Camellia sinensis var. sinensis HOM05D005450 ORTHO05D006880 1.2e-36 158.7 107 72.0
C02p47970 Brassica napus HOM05D005450 ORTHO05D006880 1.6e-36 158.3 213 49.8
C02p47920 Brassica napus HOM05D005450 ORTHO05D006880 2.7e-36 157.5 104 77.9
BolC2t10824H Brassica oleracea HOM05D005450 ORTHO05D006880 2.7e-36 157.5 104 77.9
MCO09G223 Micromonas commoda HOM05D005450 ORTHO05D006880 1.5e-34 151.8 322 37.9
Cre16.g659150 Chlamydomonas reinhardtii HOM05D005450 ORTHO05D006880 1.5e-26 125.2 358 33.0
SHI51348 Sapria himalayana HOM05D005450 ORTHO05D006880 3.6e-25 120.6 218 38.1
arahy.Tifrunner.gnm1.ann1.HL18KG Arachis hypogaea HOM05D005450 ORTHO05D006880 1.8e-24 118.2 118 61.0
SEGI_27441 Sequoiadendron giganteum HOM05D005450 ORTHO05D006880 3.6e-17 94.0 116 49.1
C09p29040 Brassica napus HOM05D005450 ORTHO05D006880 2.4e-16 91.3 121 50.4
BraA02t08058Z Brassica rapa HOM05D005450 ORTHO05D006880 1.7e-14 85.1 185 40.0
Lj2P235T37 Lonicera japonica HOM05D005450 ORTHO05D006880 5.4e-13 80.1 182 40.1
Actinidia09179 Actinidia chinensis HOM05D005450 ORTHO05D006880 3.5e-12 77.4 66 59.1
Cfa024331 Carpinus fangiana HOM05D005450 ORTHO05D006880 7.4e-10 69.7 391 28.1
Cfa024074 Carpinus fangiana HOM05D000374 ORTHO05D000238 9.0e-08 62.8 210 28.1
BolC2t09527H Brassica oleracea HOM05D016962 ORTHO05D018713 5.8e-07 60.1 63 60.3
BcaC08g44235 Brassica carinata HOM05D016962 ORTHO05D018713 2.9e-06 57.8 63 58.7
A04p16170 Brassica napus HOM05D016962 ORTHO05D018713 2.9e-06 57.8 63 58.7
A09p46710 Brassica napus HOM05D016962 ORTHO05D018713 2.9e-06 57.8 63 58.7
C09p30520 Brassica napus HOM05D016962 ORTHO05D018713 2.9e-06 57.8 63 58.7
BolC3t21573H Brassica oleracea HOM05D016962 ORTHO05D018713 2.9e-06 57.8 63 58.7
BraA07t27824Z Brassica rapa HOM05D016962 ORTHO05D018713 2.9e-06 57.8 63 58.7


User provided reference genes

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