Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0106 Capsella rubella HOM05D005023 ORTHO05D006009 1.4e-162 576.2 297 100.0
AT5G46850 Arabidopsis thaliana HOM05D005023 ORTHO05D006009 2.0e-129 466.1 300 80.3
AL8G11450 Arabidopsis lyrata HOM05D005023 ORTHO05D006009 2.7e-129 465.7 302 81.5
Thhalv10000976m.g Eutrema salsugineum HOM05D005023 ORTHO05D006009 6.6e-120 434.5 302 76.8
CARHR174600 Cardamine hirsuta HOM05D005023 ORTHO05D006009 3.6e-118 428.7 304 75.3
Sp2g11650 Schrenkiella parvula HOM05D005023 ORTHO05D006009 3.6e-118 428.7 307 74.6
BcaC06g31439 Brassica carinata HOM05D005023 ORTHO05D006009 7.1e-106 387.9 301 69.4
Aa31sc182G50 Aethionema arabicum HOM05D005023 ORTHO05D006009 7.8e-105 384.4 308 68.2
A06p45570 Brassica napus HOM05D005023 ORTHO05D006009 6.6e-104 381.3 298 69.5
BraA06t27429Z Brassica rapa HOM05D005023 ORTHO05D006009 1.9e-103 379.8 298 69.1
BolC7t43557H Brassica oleracea HOM05D005023 ORTHO05D006009 1.2e-100 370.5 298 67.4
BcaC06g34337 Brassica carinata HOM05D005023 ORTHO05D006009 3.8e-99 365.5 298 66.4
C07p30210 Brassica napus HOM05D005023 ORTHO05D006009 3.8e-99 365.5 298 66.4
THA.LOC104806696 Tarenaya hassleriana HOM05D005023 ORTHO05D006009 4.2e-90 335.5 299 61.2
COL.COLO4_16967 Corchorus olitorius HOM05D005023 ORTHO05D006009 6.3e-54 215.3 267 48.3
QL12p004398 Quercus lobata HOM05D005023 ORTHO05D006009 8.2e-54 214.9 290 45.9
Dinv28986 Davidia involucrata HOM05D005023 ORTHO05D006009 1.9e-50 203.8 288 44.4
Potri.003G095200 Populus trichocarpa HOM05D005023 ORTHO05D006009 1.9e-50 203.8 295 43.4
Thecc.03G307500 Theobroma cacao HOM05D005023 ORTHO05D006009 2.5e-50 203.4 265 47.2
Aqoxy1G01584 Aquilegia oxysepala HOM05D005023 ORTHO05D006009 4.2e-50 202.6 303 42.9
Cpa.g.sc90.15 Carica papaya HOM05D005023 ORTHO05D006009 4.2e-50 202.6 273 44.0
Duzib084G0965 Durio zibethinus HOM05D005023 ORTHO05D006009 9.4e-50 201.4 295 42.7
Cfa012488 Carpinus fangiana HOM05D005023 ORTHO05D006009 1.6e-49 200.7 297 42.8
Lsat_1_v5_gn_6_80180 Lactuca sativa HOM05D005023 ORTHO05D006009 1.6e-49 200.7 301 39.5
CANSAT54G0648 Cannabis sativa HOM05D005023 ORTHO05D006009 4.7e-49 199.1 296 42.2
CiPaw.11G096900 Carya illinoinensis HOM05D005023 ORTHO05D006009 6.1e-49 198.7 306 42.2
Atru.chr12.846 Acer truncatum HOM05D005023 ORTHO05D006009 2.3e-48 196.8 270 44.8
Actinidia09175 Actinidia chinensis HOM05D005023 ORTHO05D006009 3.0e-48 196.4 288 42.0
Prupe.5G030700 Prunus persica HOM05D005023 ORTHO05D006009 5.2e-48 195.7 310 43.2
Gohir.D12G209350 Gossypium hirsutum HOM05D005023 ORTHO05D006009 6.7e-48 195.3 260 45.0
ECA240G3323 Erigeron canadensis HOM05D005023 ORTHO05D006009 1.1e-47 194.5 264 44.3
Gohir.A12G206900 Gossypium hirsutum HOM05D005023 ORTHO05D006009 1.1e-47 194.5 264 45.5
Gorai.008G224900 Gossypium raimondii HOM05D005023 ORTHO05D006009 1.5e-47 194.1 264 45.1
CSS0008599 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 2.0e-47 193.7 256 43.8
SalBow6G6255 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.0e-47 193.7 284 44.4
Migut.E00780 Erythranthe guttata HOM05D005023 ORTHO05D006009 2.6e-47 193.4 281 44.1
SalBow6G3524 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.6e-47 193.4 282 45.0
SalBow6G4088 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.6e-47 193.4 285 44.9
Ciclev10016033m.g Citrus clementina HOM05D005023 ORTHO05D006009 3.3e-47 193.0 314 40.4
Cc08_g03230 Coffea canephora HOM05D005023 ORTHO05D006009 4.4e-47 192.6 267 43.4
SalBow6G3389 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.4e-47 192.6 246 48.4
Lj6g0028231 Lotus japonicus HOM05D005023 ORTHO05D006009 5.7e-47 192.2 295 41.7
Phvul.009G009200 Phaseolus vulgaris HOM05D005023 ORTHO05D006009 5.7e-47 192.2 257 45.9
CAN.G298.60 Capsicum annuum HOM05D005023 ORTHO05D006009 7.4e-47 191.8 264 45.1
CAN.G298.61 Capsicum annuum HOM05D005023 ORTHO05D006009 7.4e-47 191.8 264 45.1
CAN.G726.32 Capsicum annuum HOM05D005023 ORTHO05D006009 7.4e-47 191.8 264 45.1
Nitab4.5_0002380g0110 Nicotiana tabacum HOM05D005023 ORTHO05D006009 9.7e-47 191.4 264 44.7
SalBow8G0269 Salvia bowleyana HOM05D005023 ORTHO05D006009 9.7e-47 191.4 245 48.2
Rhsim07G0130800 Rhododendron simsii HOM05D005023 ORTHO05D006009 1.3e-46 191.0 297 41.4
GSVIVG01013101001 Vitis vinifera HOM05D005023 ORTHO05D006009 1.3e-46 191.0 266 44.4
SalBow6G2872 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.7e-46 190.7 277 45.1
SalBow6G6846 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.7e-46 190.7 284 44.0
Ca_22661_v3 Cicer arietinum L. HOM05D005023 ORTHO05D006009 2.2e-46 190.3 264 45.5
SalBow6G4332 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.2e-46 190.3 285 42.8
Actinidia25987 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.8e-46 189.9 260 44.6
Hma1.2p1_2161F.1_g315620 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 2.8e-46 189.9 258 44.6
SalBow6G3383 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.8e-46 189.9 277 44.8
SalBow6G6227 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.8e-46 189.9 277 44.8
Eucgr.E00250 Eucalyptus grandis HOM05D005023 ORTHO05D006009 3.7e-46 189.5 298 39.9
Sabra01G0107600 Salix brachista HOM05D005023 ORTHO05D006009 4.8e-46 189.1 283 42.8
Manes.02G223400 Manihot esculenta HOM05D005023 ORTHO05D006009 6.3e-46 188.7 314 39.8
SalBow6G1717 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.3e-46 188.7 277 44.8
SalBow6G6031 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.3e-46 188.7 246 47.6
MD06G1038100 Malus domestica HOM05D005023 ORTHO05D006009 1.1e-45 188.0 278 42.1
arahy.Tifrunner.gnm1.ann1.J93PEP Arachis hypogaea HOM05D005023 ORTHO05D006009 2.4e-45 186.8 290 40.3
Peaxi162Scf00170g00918 Petunia axillaris HOM05D005023 ORTHO05D006009 2.4e-45 186.8 267 43.4
AUR62033976 Chenopodium quinoa HOM05D005023 ORTHO05D006009 3.1e-45 186.4 273 44.3
arahy.Tifrunner.gnm1.ann1.6CH5L4 Arachis hypogaea HOM05D005023 ORTHO05D006009 5.3e-45 185.7 290 40.7
Nitab4.5_0000353g0050 Nicotiana tabacum HOM05D005023 ORTHO05D006009 5.3e-45 185.7 254 44.1
PGSC0003DMG400014810 Solanum tuberosum HOM05D005023 ORTHO05D006009 5.3e-45 185.7 264 44.7
arahy.Tifrunner.gnm1.ann1.NK2KWA Arachis hypogaea HOM05D005023 ORTHO05D006009 7.0e-45 185.3 290 40.7
Lj2A234G45 Lonicera japonica HOM05D005023 ORTHO05D006009 1.6e-44 184.1 328 39.6
TWI60G0688 Tripterygium wilfordii HOM05D005023 ORTHO05D006009 1.6e-44 184.1 268 42.9
EL10Ac8g19220 Beta vulgaris HOM05D005023 ORTHO05D006009 2.0e-44 183.7 271 42.4
Solyc08g076570.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 2.6e-44 183.3 263 44.1
DCAR_031128 Daucus carota HOM05D005023 ORTHO05D006009 3.5e-44 183.0 268 45.1
Nitab4.5_0004669g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 3.5e-44 183.0 249 45.0
Psat4g122280 Pisum sativum HOM05D005023 ORTHO05D006009 3.5e-44 183.0 262 43.9
PGR042G2438 Punica granatum HOM05D005023 ORTHO05D006009 3.5e-44 183.0 256 41.4
TPR.G14159 Trifolium pratense HOM05D005023 ORTHO05D006009 3.5e-44 183.0 262 43.9
Medtr8g066330 Medicago truncatula HOM05D005023 ORTHO05D006009 4.5e-44 182.6 263 43.0
HanXRQChr03g0083581 Helianthus annuus HOM05D005023 ORTHO05D006009 7.7e-44 181.8 261 41.8
Hund11209 Selenicereus undatus HOM05D005023 ORTHO05D006009 1.0e-43 181.4 297 42.8
Nitab4.5_0004839g0010 Nicotiana tabacum HOM05D005023 ORTHO05D006009 1.7e-43 180.6 249 43.8
Sopen08g025130 Solanum pennellii HOM05D005023 ORTHO05D006009 1.7e-43 180.6 263 43.3
PSO170G6706 Papaver somniferum HOM05D005023 ORTHO05D006009 2.9e-43 179.9 303 40.9
RcHm_v2.0_Chr7g0211361 Rosa chinensis HOM05D005023 ORTHO05D006009 5.0e-43 179.1 268 41.0
Sabra03G0064200 Salix brachista HOM05D005023 ORTHO05D006009 6.5e-43 178.7 218 49.1
FvH4_5g22760 Fragaria vesca HOM05D005023 ORTHO05D006009 8.5e-43 178.3 298 38.9
FAN18G3597 Fragaria x ananassa HOM05D005023 ORTHO05D006009 8.5e-43 178.3 298 38.9
FAN08G0704 Fragaria x ananassa HOM05D005023 ORTHO05D006009 1.1e-42 177.9 296 38.9
SalBow6G3781 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.1e-42 177.9 206 51.0
Haze_08177 Corylus avellana HOM05D005023 ORTHO05D006009 2.5e-42 176.8 212 49.1
SGA_v2.0_scaffold6G03150 Striga asiatica HOM05D005023 ORTHO05D006009 3.2e-42 176.4 296 40.5
FAN18G4268 Fragaria x ananassa HOM05D005023 ORTHO05D006009 4.2e-42 176.0 298 38.6
Glyma.04G013700 Glycine max HOM05D005023 ORTHO05D006009 4.2e-42 176.0 258 42.6
Glyma.06G013600 Glycine max HOM05D005023 ORTHO05D006009 4.2e-42 176.0 284 41.2
PSO302G0152 Papaver somniferum HOM05D005023 ORTHO05D006009 4.2e-42 176.0 273 43.6
PSO782G3892 Papaver somniferum HOM05D005023 ORTHO05D006009 4.2e-42 176.0 287 41.1
FAN13G2198 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.1e-41 173.7 307 39.4
FAN13G2978 Fragaria x ananassa HOM05D005023 ORTHO05D006009 2.1e-41 173.7 307 39.4
Lalb_Chr25g0286701 Lupinus albus HOM05D005023 ORTHO05D006009 3.6e-41 172.9 283 40.3
Ah.12g065340 Amaranthus hybridus HOM05D005023 ORTHO05D006009 2.6e-39 166.8 276 38.8
vmacro00304 Vaccinium macrocarpon HOM05D005023 ORTHO05D006009 2.6e-39 166.8 237 43.5
MSTRG.1995 Avicennia marina HOM05D005023 ORTHO05D006009 3.4e-39 166.4 295 40.0
Psat4g122680 Pisum sativum HOM05D005023 ORTHO05D006009 7.5e-39 165.2 224 46.0
arahy.Tifrunner.gnm1.ann1.GAHP45 Arachis hypogaea HOM05D005023 ORTHO05D006009 9.7e-39 164.9 256 39.8
MBI02_g28332_MAGBIO Magnolia biondii HOM05D005023 ORTHO05D006009 5.3e-37 159.1 257 40.9
TPR.G3350 Trifolium pratense HOM05D005023 ORTHO05D006009 7.0e-37 158.7 185 48.6
FAN04G1126 Fragaria x ananassa HOM05D005023 ORTHO05D006009 7.7e-36 155.2 232 40.5
Nn7g38116 Nelumbo nucifera HOM05D005023 ORTHO05D006009 1.0e-35 154.8 288 38.9
SalBow6G0983 Salvia bowleyana HOM05D005023 ORTHO05D006009 2.2e-35 153.7 209 49.3
ClCG04G001320 Citrullus lanatus HOM05D005023 ORTHO05D006009 1.5e-34 151.0 249 41.4
PSO063G5178 Papaver somniferum HOM05D005023 ORTHO05D006009 1.9e-34 150.6 171 49.1
Sed0002054 Sechium edule HOM05D005023 ORTHO05D006009 2.5e-34 150.2 284 38.0
CDE02G4581 Ceratophyllum demersum HOM05D005023 ORTHO05D006009 9.4e-34 148.3 267 36.3
SalBow6G5471 Salvia bowleyana HOM05D005023 ORTHO05D006009 1.2e-33 147.9 226 44.2
unitig_21.g20893 Utricularia gibba HOM05D005023 ORTHO05D004745 1.6e-33 147.5 216 42.1
Os12g0596900 Oryza sativa ssp. japonica HOM05D005023 ORTHO05D006009 3.6e-33 146.4 267 37.1
SalBow6G0969 Salvia bowleyana HOM05D005023 ORTHO05D006009 8.0e-33 145.2 197 49.2
SalBow6G1311 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.0e-32 143.3 204 47.1
Zm00001eb030880 Zea mays HOM05D005023 ORTHO05D006009 8.8e-32 141.7 207 42.0
SHI20240 Sapria himalayana HOM05D000452 ORTHO05D000647 1.2e-31 141.4 292 35.6
HPP92_014902 Vanilla planifolia HOM05D005023 ORTHO05D006009 7.5e-31 138.7 242 36.8
Sc01g0007280 Simmondsia chinensis HOM05D005023 ORTHO05D006009 3.7e-30 136.3 282 35.5
CsaV3_1G033210 Cucumis sativus L. HOM05D000021 ORTHO05D000010 8.3e-30 135.2 218 40.8
HPP92_014897 Vanilla planifolia HOM05D005023 ORTHO05D006009 3.1e-29 133.3 244 36.9
Hma1.2p1_1594F.1_g292650 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 1.2e-28 131.3 169 47.3
SalBow6G6268 Salvia bowleyana HOM05D005023 ORTHO05D006009 3.8e-27 126.3 146 45.9
Hma1.2p1_2161F.1_g315630 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 5.0e-27 125.9 153 49.0
ATR0580G166 Amborella trichopoda HOM05D005237 ORTHO05D006189 1.9e-26 124.0 267 34.8
SalBow6G0951 Salvia bowleyana HOM05D005023 ORTHO05D006009 4.2e-26 122.9 136 47.1
Solyc08g076550.3 Solanum lycopersicum HOM05D005023 ORTHO05D006009 9.5e-26 121.7 142 46.5
MELO3C033076.2 Cucumis melo HOM05D005023 ORTHO05D006009 4.1e-21 106.3 239 33.5
Mapoly0088s0063 Marchantia polymorpha HOM05D005023 ORTHO05D006009 2.5e-18 97.1 202 32.7
Hma1.2p1_0572F.1_g181170 Hydrangea macrophylla HOM05D005023 ORTHO05D006009 9.5e-18 95.1 125 48.0
Actinidia09177 Actinidia chinensis HOM05D005023 ORTHO05D006009 2.3e-16 90.5 274 27.4
Pp3c13_7870 Physcomitrium patens HOM05D005023 ORTHO05D006009 8.3e-14 82.0 203 31.5
SMO358G0075 Selaginella moellendorffii HOM05D005023 ORTHO05D006009 7.0e-13 79.0 200 32.5
TAR375G0008 Trochodendron aralioides HOM05D005023 ORTHO05D006009 9.2e-13 78.6 222 31.1
AagrBONN_evm.TU.Sc2ySwM_344.1294 Anthoceros agrestis HOM05D005023 ORTHO05D006009 1.1e-10 71.6 154 31.8
CSS0036970 Camellia sinensis var. sinensis HOM05D005023 ORTHO05D006009 7.5e-07 58.9 94 35.1
SalBow6G7173 Salvia bowleyana HOM05D005023 ORTHO05D006009 6.4e-06 55.8 90 35.6


User provided reference genes

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