Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0088 Capsella rubella HOM05D008727 ORTHO05D011379 2.0e-98 362.5 182 100.0
AT5G46980 Arabidopsis thaliana HOM05D008727 ORTHO05D011379 4.7e-76 288.1 162 88.3
Sp2g11770 Schrenkiella parvula HOM05D008727 ORTHO05D011379 4.9e-57 224.9 166 68.1
Carub.0008s0084 Capsella rubella HOM05D008727 ORTHO05D011379 1.0e-46 190.7 162 59.9
Carub.0008s0086 Capsella rubella HOM05D008727 ORTHO05D011379 6.6e-46 188.0 162 58.6
AT5G46990 Arabidopsis thaliana HOM05D008727 ORTHO05D011379 9.5e-45 184.1 162 59.3
AT1G54620 Arabidopsis thaliana HOM05D008727 ORTHO05D011379 3.6e-44 182.2 162 56.8
Carub.0002s0896 Capsella rubella HOM05D008727 ORTHO05D011379 6.2e-44 181.4 177 52.5
Sp2g11780 Schrenkiella parvula HOM05D008727 ORTHO05D001261 1.4e-43 180.3 164 57.9
AL1G65050 Arabidopsis lyrata HOM05D008727 ORTHO05D011379 2.0e-42 176.4 162 54.9
Thhalv10001202m.g Eutrema salsugineum HOM05D008727 ORTHO05D001261 9.2e-40 167.5 165 55.2
Sp2g11790 Schrenkiella parvula HOM05D008727 ORTHO05D001261 1.6e-39 166.8 162 54.9
A06p45420 Brassica napus HOM05D008727 ORTHO05D011379 5.6e-37 158.3 162 51.9
BraA06t27410Z Brassica rapa HOM05D008727 ORTHO05D011379 5.6e-37 158.3 162 51.9
C09p74390 Brassica napus HOM05D008727 ORTHO05D011379 1.4e-35 153.7 167 48.5
A06p45410 Brassica napus HOM05D008727 ORTHO05D011379 2.3e-35 152.9 166 52.4
BraA06t27409Z Brassica rapa HOM05D008727 ORTHO05D011379 2.3e-35 152.9 166 52.4
BcaC06g34300 Brassica carinata HOM05D008727 ORTHO05D011379 4.0e-35 152.1 166 52.4
C07p30610 Brassica napus HOM05D008727 ORTHO05D011379 4.0e-35 152.1 166 52.4
BolC7t43601H Brassica oleracea HOM05D008727 ORTHO05D011379 4.0e-35 152.1 166 52.4
BcaC06g31427 Brassica carinata HOM05D008727 ORTHO05D011379 6.8e-35 151.4 166 50.6
BolC9t60173H Brassica oleracea HOM05D008727 ORTHO05D011379 6.8e-35 151.4 167 48.5
Thhalv10001116m.g Eutrema salsugineum HOM05D008727 ORTHO05D011379 2.6e-34 149.4 166 48.8
BraA10t45379Z Brassica rapa HOM05D008727 ORTHO05D011379 7.6e-34 147.9 167 47.3
BcaC06g31428 Brassica carinata HOM05D008727 ORTHO05D011379 1.7e-33 146.7 148 54.1
BraA06t27408Z Brassica rapa HOM05D008727 ORTHO05D011379 3.8e-33 145.6 167 49.7
C07p30620 Brassica napus HOM05D008727 ORTHO05D011379 6.4e-33 144.8 167 49.1
A06p45400 Brassica napus HOM05D008727 ORTHO05D011379 1.1e-32 144.1 167 49.1
BcaB07g30480 Brassica carinata HOM05D008727 ORTHO05D011379 1.9e-32 143.3 167 49.1
A10p33490 Brassica napus HOM05D008727 ORTHO05D011379 1.9e-32 143.3 167 47.3
BcaC06g31426 Brassica carinata HOM05D008727 ORTHO05D011379 5.4e-32 141.7 164 48.8
BolC7t43602H Brassica oleracea HOM05D008727 ORTHO05D011379 5.4e-32 141.7 167 48.5
BcaC06g34299 Brassica carinata HOM05D008727 ORTHO05D011379 1.2e-31 140.6 164 48.2
AL8G11300 Arabidopsis lyrata HOM05D008727 ORTHO05D011379 1.5e-29 133.7 130 57.7
CARHR055710 Cardamine hirsuta HOM05D008727 ORTHO05D011379 1.2e-28 130.6 162 46.9
BcaNung04448 Brassica carinata HOM05D008727 ORTHO05D011379 8.9e-27 124.4 127 51.2
BolC2t10850H Brassica oleracea HOM05D008727 ORTHO05D023847 4.9e-25 118.6 163 42.9
A02p30610 Brassica napus HOM05D008727 ORTHO05D023847 1.4e-24 117.1 163 42.3
BraA02t08079Z Brassica rapa HOM05D008727 ORTHO05D023847 1.4e-24 117.1 163 42.3
BcaC03g16915 Brassica carinata HOM05D008727 ORTHO05D023847 1.9e-24 116.7 163 42.3
C02p48180 Brassica napus HOM05D008727 ORTHO05D023847 1.9e-24 116.7 163 42.3
AL8G11310 Arabidopsis lyrata HOM05D001445 ORTHO05D001261 2.3e-22 109.8 163 39.3
Sp2g11740 Schrenkiella parvula HOM05D001445 ORTHO05D001261 3.0e-22 109.4 166 38.0
Sp2g11760 Schrenkiella parvula HOM05D001445 ORTHO05D001261 1.9e-21 106.7 163 38.7
Carub.0008s0089 Capsella rubella HOM05D001445 ORTHO05D001261 5.6e-21 105.1 163 38.0
AT5G46930 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 3.6e-20 102.4 163 37.4
AL8G11330 Arabidopsis lyrata HOM05D001445 ORTHO05D001261 6.2e-20 101.7 166 36.1
AL8G11340 Arabidopsis lyrata HOM05D001445 ORTHO05D001261 8.1e-20 101.3 169 36.1
AT5G46940 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 1.1e-19 100.9 166 36.7
BcaB07g30808 Brassica carinata HOM05D001445 ORTHO05D001261 1.4e-19 100.5 162 37.7
AT5G46970 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 1.8e-19 100.1 163 35.6
Aa31LG9G5990 Aethionema arabicum HOM05D001445 ORTHO05D001261 3.1e-19 99.4 163 40.5
Thhalv10001100m.g Eutrema salsugineum HOM05D001445 ORTHO05D001261 3.1e-19 99.4 163 38.0
Sp2g11720 Schrenkiella parvula HOM05D001445 ORTHO05D001261 9.0e-19 97.8 163 36.8
Carub.0008s0091 Capsella rubella HOM05D001445 ORTHO05D001261 2.6e-18 96.3 168 36.9
BcaC03g16912 Brassica carinata HOM05D001445 ORTHO05D001261 3.4e-18 95.9 162 37.0
C02p48140 Brassica napus HOM05D001445 ORTHO05D001261 3.4e-18 95.9 162 37.0
CARHR174480 Cardamine hirsuta HOM05D001445 ORTHO05D001261 3.4e-18 95.9 149 38.3
BolC2t10846H Brassica oleracea HOM05D001445 ORTHO05D001261 4.5e-18 95.5 162 37.0
Thhalv10001105m.g Eutrema salsugineum HOM05D001445 ORTHO05D001261 5.8e-18 95.1 162 35.2
CARHR174500 Cardamine hirsuta HOM05D001445 ORTHO05D001261 9.9e-18 94.4 166 34.9
A02p30180 Brassica napus HOM05D001445 ORTHO05D001261 4.9e-17 92.0 162 35.2
Carub.0008s0092 Capsella rubella HOM05D001445 ORTHO05D001261 4.9e-17 92.0 169 34.9
BraA02t08034Z Brassica rapa HOM05D001445 ORTHO05D001261 8.4e-17 91.3 162 35.2
BcaC06g34301 Brassica carinata HOM05D008727 ORTHO05D011379 1.4e-16 90.5 106 50.9
C02p47650 Brassica napus HOM05D001445 ORTHO05D001261 1.9e-16 90.1 162 35.2
BolC2t10801H Brassica oleracea HOM05D001445 ORTHO05D001261 1.9e-16 90.1 162 35.2
Aa31sc241G60 Aethionema arabicum HOM05D001445 ORTHO05D001261 2.4e-16 89.7 163 37.4
BraA02t08076Z Brassica rapa HOM05D001445 ORTHO05D001261 3.2e-16 89.4 163 35.6
Sp2g11750 Schrenkiella parvula HOM05D001445 ORTHO05D001261 3.2e-16 89.4 162 35.8
A02p30580 Brassica napus HOM05D001445 ORTHO05D001261 4.2e-16 89.0 163 35.6
BolC3t18500H Brassica oleracea HOM05D001445 ORTHO05D001261 7.1e-16 88.2 162 34.6
Carub.0008s0090 Capsella rubella HOM05D001445 ORTHO05D001261 9.3e-16 87.8 162 33.3
C03p62420 Brassica napus HOM05D001445 ORTHO05D001261 2.7e-15 86.3 162 34.0
A02p30590 Brassica napus HOM05D001445 ORTHO05D001261 3.5e-15 85.9 162 33.3
BraA02t08073Z Brassica rapa HOM05D001445 ORTHO05D001261 4.6e-15 85.5 163 33.7
BcaC03g16913 Brassica carinata HOM05D001445 ORTHO05D001261 6.0e-15 85.1 162 33.3
C02p48150 Brassica napus HOM05D001445 ORTHO05D001261 6.0e-15 85.1 162 33.3
BolC2t10847H Brassica oleracea HOM05D001445 ORTHO05D001261 6.0e-15 85.1 162 33.3
BcaC03g16868 Brassica carinata HOM05D001445 ORTHO05D001261 7.9e-15 84.7 162 34.0
Aa31sc241G40 Aethionema arabicum HOM05D001445 ORTHO05D001261 1.8e-14 83.6 162 35.8
A02p30560 Brassica napus HOM05D001445 ORTHO05D001261 3.9e-14 82.4 167 32.9
Thhalv10001199m.g Eutrema salsugineum HOM05D001445 ORTHO05D001261 1.9e-13 80.1 162 32.1
Nn1g00654 Nelumbo nucifera HOM05D001445 ORTHO05D001261 1.9e-13 80.1 152 31.6
AL8G11320 Arabidopsis lyrata HOM05D001445 ORTHO05D001261 2.5e-13 79.7 162 30.2
TWI15G1112 Tripterygium wilfordii HOM05D001445 ORTHO05D001261 3.3e-13 79.3 148 30.4
C02p48090 Brassica napus HOM05D001445 ORTHO05D001261 4.3e-13 79.0 163 31.9
BolC2t10840H Brassica oleracea HOM05D001445 ORTHO05D001261 4.3e-13 79.0 163 31.9
A02p30500 Brassica napus HOM05D001445 ORTHO05D001261 5.6e-13 78.6 163 31.3
BraA02t08068Z Brassica rapa HOM05D001445 ORTHO05D001261 5.6e-13 78.6 163 31.3
BcaC06g31431 Brassica carinata HOM05D001445 ORTHO05D001261 9.6e-13 77.8 164 29.9
Sp2g11730 Schrenkiella parvula HOM05D001445 ORTHO05D001261 9.6e-13 77.8 151 31.1
CANSAT21G0328 Cannabis sativa HOM05D001445 ORTHO05D001261 1.6e-12 77.0 176 27.3
MELO3C003367.2 Cucumis melo HOM05D001445 ORTHO05D001261 4.8e-12 75.5 146 30.1
FvH4_5g20940 Fragaria vesca HOM05D001445 ORTHO05D001261 6.2e-12 75.1 140 30.7
FAN18G4149 Fragaria x ananassa HOM05D001445 ORTHO05D001261 6.2e-12 75.1 140 30.7
A06p45450 Brassica napus HOM05D001445 ORTHO05D001261 1.1e-11 74.3 165 31.5
Glyma.17G151200 Glycine max HOM05D001445 ORTHO05D001261 1.1e-11 74.3 167 29.3
BcaB01g05448 Brassica carinata HOM05D001445 ORTHO05D001261 3.1e-11 72.8 162 29.6
BcaC06g31448 Brassica carinata HOM05D001445 ORTHO05D001261 3.1e-11 72.8 162 30.2
BcaC06g34307 Brassica carinata HOM05D001445 ORTHO05D001261 4.0e-11 72.4 165 30.9
BraA06t27413Z Brassica rapa HOM05D001445 ORTHO05D001261 4.0e-11 72.4 165 30.9
FAN08G1111 Fragaria x ananassa HOM05D001445 ORTHO05D001261 6.9e-11 71.6 140 29.3
TAR629G2132 Trochodendron aralioides HOM05D001445 ORTHO05D001261 6.9e-11 71.6 145 28.3
BcaC01g02648 Brassica carinata HOM05D001445 ORTHO05D001261 1.2e-10 70.9 154 32.5
C07p30520 Brassica napus HOM05D001445 ORTHO05D001261 1.2e-10 70.9 165 30.3
BolC7t43593H Brassica oleracea HOM05D001445 ORTHO05D001261 1.2e-10 70.9 165 30.3
CsaV3_3G049590 Cucumis sativus L. HOM05D001445 ORTHO05D001261 1.2e-10 70.9 149 28.2
Duzib133G0634 Durio zibethinus HOM05D001445 ORTHO05D001261 1.2e-10 70.9 153 28.8
COL.COLO4_17127 Corchorus olitorius HOM05D001445 ORTHO05D001261 2.0e-10 70.1 152 27.0
TAR375G0630 Trochodendron aralioides HOM05D001445 ORTHO05D001261 2.6e-10 69.7 162 26.5
CiPaw.13G022000 Carya illinoinensis HOM05D001445 ORTHO05D001261 4.5e-10 68.9 159 30.8
Psat4g219240 Pisum sativum HOM05D001445 ORTHO05D001261 4.5e-10 68.9 157 28.0
RcHm_v2.0_Chr7g0207991 Rosa chinensis HOM05D001445 ORTHO05D001261 4.5e-10 68.9 162 27.8
BolC9t55775H Brassica oleracea HOM05D001445 ORTHO05D001261 5.8e-10 68.6 117 38.5
Aqoxy5G03639 Aquilegia oxysepala HOM05D001445 ORTHO05D001261 7.6e-10 68.2 149 30.9
Prupe.2G115600 Prunus persica HOM05D001445 ORTHO05D001261 1.3e-09 67.4 139 28.1
COL.COLO4_12351 Corchorus olitorius HOM05D001445 ORTHO05D001261 3.8e-09 65.9 156 25.6
TWI14G0207 Tripterygium wilfordii HOM05D001445 ORTHO05D001261 3.8e-09 65.9 139 25.2
Aqoxy3G02555 Aquilegia oxysepala HOM05D001445 ORTHO05D001261 4.9e-09 65.5 161 26.1
BcaC03g16906 Brassica carinata HOM05D001445 ORTHO05D001261 6.4e-09 65.1 156 30.1
Medtr8g009300 Medicago truncatula HOM05D001445 ORTHO05D001261 6.4e-09 65.1 158 26.6
Phvul.010G041500 Phaseolus vulgaris HOM05D001445 ORTHO05D001261 6.4e-09 65.1 156 25.0
RcHm_v2.0_Chr1g0344001 Rosa chinensis HOM05D001445 ORTHO05D001261 6.4e-09 65.1 159 25.8
PSO782G4131 Papaver somniferum HOM05D001445 ORTHO05D001261 1.4e-08 63.9 146 24.0
AT5G46950 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 1.9e-08 63.5 162 26.5
CiPaw.14G016700 Carya illinoinensis HOM05D001445 ORTHO05D001261 1.9e-08 63.5 166 30.1
COL.COLO4_17126 Corchorus olitorius HOM05D001445 ORTHO05D001261 1.9e-08 63.5 156 25.0
VMungo0331G1992 Vigna mungo HOM05D001445 ORTHO05D001261 2.4e-08 63.2 153 24.8
C09p29180 Brassica napus HOM05D001445 ORTHO05D001261 7.1e-08 61.6 117 36.8
Manes.15G171900 Manihot esculenta HOM05D001445 ORTHO05D001261 7.1e-08 61.6 162 26.5
QL04p026153 Quercus lobata HOM05D001445 ORTHO05D001261 7.1e-08 61.6 159 26.4
BcaB08g36203 Brassica carinata HOM05D001445 ORTHO05D001261 1.2e-07 60.8 93 36.6
MD07G1088700 Malus domestica HOM05D001445 ORTHO05D001261 1.2e-07 60.8 157 26.8
BraA09t37874Z Brassica rapa HOM05D001445 ORTHO05D001261 1.6e-07 60.5 117 34.2
TPR.G39508 Trifolium pratense HOM05D001445 ORTHO05D001261 1.6e-07 60.5 158 25.9
RcHm_v2.0_Chr1g0344031 Rosa chinensis HOM05D001445 ORTHO05D001261 2.1e-07 60.1 162 26.5
MBI04_g03340_MAGBIO Magnolia biondii HOM05D001445 ORTHO05D001261 3.5e-07 59.3 165 24.2
Potri.014G044100 Populus trichocarpa HOM05D001445 ORTHO05D001261 3.5e-07 59.3 159 28.9
Sabra14G0032000 Salix brachista HOM05D001445 ORTHO05D001261 3.5e-07 59.3 155 27.1
AT5G46960 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 4.6e-07 58.9 166 26.5
RcHm_v2.0_Chr1g0344051 Rosa chinensis HOM05D001445 ORTHO05D001261 6.0e-07 58.5 159 25.2
Aqoxy2G03061 Aquilegia oxysepala HOM05D001445 ORTHO05D001261 3.0e-06 56.2 165 27.9
Oeu037412.2 Olea europaea HOM05D004986 ORTHO05D005898 3.9e-06 55.8 140 25.7
PSO573G0039 Papaver somniferum HOM05D001445 ORTHO05D001261 6.7e-06 55.1 159 23.9
PSO775G0001 Papaver somniferum HOM05D001445 ORTHO05D001261 6.7e-06 55.1 159 23.9
PSO782G2009 Papaver somniferum HOM05D001445 ORTHO05D001261 8.7e-06 54.7 176 25.6


User provided reference genes

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