Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0086 Capsella rubella HOM05D008727 ORTHO05D011379 9.6e-101 370.2 187 100.0
Carub.0008s0084 Capsella rubella HOM05D008727 ORTHO05D011379 1.1e-69 266.9 184 69.0
AT5G46990 Arabidopsis thaliana HOM05D008727 ORTHO05D011379 1.4e-67 260.0 184 69.6
Sp2g11780 Schrenkiella parvula HOM05D008727 ORTHO05D001261 9.7e-61 237.3 185 63.8
Sp2g11770 Schrenkiella parvula HOM05D008727 ORTHO05D011379 3.5e-58 228.8 181 61.3
Sp2g11790 Schrenkiella parvula HOM05D008727 ORTHO05D001261 6.1e-55 218.0 182 59.3
Thhalv10001202m.g Eutrema salsugineum HOM05D008727 ORTHO05D001261 5.2e-54 214.9 191 59.2
AT1G54620 Arabidopsis thaliana HOM05D008727 ORTHO05D011379 9.8e-53 210.7 181 55.8
AL1G65050 Arabidopsis lyrata HOM05D008727 ORTHO05D011379 3.7e-52 208.8 181 55.2
AT5G46980 Arabidopsis thaliana HOM05D008727 ORTHO05D011379 1.4e-51 206.8 182 57.1
Carub.0002s0896 Capsella rubella HOM05D008727 ORTHO05D011379 1.6e-50 203.4 179 54.7
Carub.0008s0088 Capsella rubella HOM05D008727 ORTHO05D011379 5.2e-46 188.3 162 58.6
Thhalv10001116m.g Eutrema salsugineum HOM05D008727 ORTHO05D011379 2.0e-45 186.4 185 53.0
A06p45420 Brassica napus HOM05D008727 ORTHO05D011379 8.6e-41 171.0 181 49.7
BraA06t27410Z Brassica rapa HOM05D008727 ORTHO05D011379 8.6e-41 171.0 181 49.7
CARHR055710 Cardamine hirsuta HOM05D008727 ORTHO05D011379 2.1e-39 166.4 179 50.3
BcaC06g31427 Brassica carinata HOM05D008727 ORTHO05D011379 3.4e-37 159.1 180 46.7
BcaC06g34300 Brassica carinata HOM05D008727 ORTHO05D011379 4.4e-37 158.7 186 45.2
C09p74390 Brassica napus HOM05D008727 ORTHO05D011379 4.4e-37 158.7 180 47.2
C07p30610 Brassica napus HOM05D008727 ORTHO05D011379 5.7e-37 158.3 186 45.2
BolC7t43601H Brassica oleracea HOM05D008727 ORTHO05D011379 5.7e-37 158.3 186 45.2
BolC9t60173H Brassica oleracea HOM05D008727 ORTHO05D011379 9.8e-37 157.5 180 47.2
BcaC06g31426 Brassica carinata HOM05D008727 ORTHO05D011379 1.3e-36 157.1 177 46.9
BraA06t27409Z Brassica rapa HOM05D008727 ORTHO05D011379 1.7e-36 156.8 186 44.1
A06p45410 Brassica napus HOM05D008727 ORTHO05D011379 2.2e-36 156.4 186 44.1
BcaC06g31428 Brassica carinata HOM05D008727 ORTHO05D011379 3.7e-36 155.6 166 50.0
BcaB07g30480 Brassica carinata HOM05D008727 ORTHO05D011379 4.9e-36 155.2 182 47.8
BraA10t45379Z Brassica rapa HOM05D008727 ORTHO05D011379 4.1e-35 152.1 181 44.8
C07p30620 Brassica napus HOM05D008727 ORTHO05D011379 7.0e-35 151.4 181 44.2
BraA06t27408Z Brassica rapa HOM05D008727 ORTHO05D011379 2.0e-34 149.8 181 44.2
A06p45400 Brassica napus HOM05D008727 ORTHO05D011379 3.5e-34 149.1 181 43.6
BcaC06g34299 Brassica carinata HOM05D008727 ORTHO05D011379 7.8e-34 147.9 179 43.6
A10p33490 Brassica napus HOM05D008727 ORTHO05D011379 1.3e-33 147.1 181 44.8
BolC7t43602H Brassica oleracea HOM05D008727 ORTHO05D011379 1.7e-33 146.7 181 43.1
Carub.0008s0089 Capsella rubella HOM05D001445 ORTHO05D001261 1.1e-32 144.1 177 44.6
AL8G11310 Arabidopsis lyrata HOM05D001445 ORTHO05D001261 3.6e-31 139.0 177 43.5
AT5G46970 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 5.2e-30 135.2 168 44.6
BcaNung04448 Brassica carinata HOM05D008727 ORTHO05D011379 1.9e-27 126.7 141 44.7
Sp2g11760 Schrenkiella parvula HOM05D001445 ORTHO05D001261 2.4e-27 126.3 178 43.3
Thhalv10001100m.g Eutrema salsugineum HOM05D001445 ORTHO05D001261 2.5e-24 116.3 167 41.3
Sp2g11720 Schrenkiella parvula HOM05D001445 ORTHO05D001261 5.6e-24 115.2 167 41.3
Aa31LG9G5990 Aethionema arabicum HOM05D001445 ORTHO05D001261 7.3e-24 114.8 177 39.0
Sp2g11740 Schrenkiella parvula HOM05D001445 ORTHO05D001261 1.2e-23 114.0 177 34.5
AL8G11340 Arabidopsis lyrata HOM05D001445 ORTHO05D001261 1.6e-23 113.6 171 39.2
AT5G46930 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 1.6e-23 113.6 168 39.9
BcaC03g16915 Brassica carinata HOM05D008727 ORTHO05D023847 2.8e-23 112.8 170 40.6
C02p48180 Brassica napus HOM05D008727 ORTHO05D023847 2.8e-23 112.8 170 40.6
BolC2t10850H Brassica oleracea HOM05D008727 ORTHO05D023847 3.6e-23 112.5 170 40.6
BraA02t08079Z Brassica rapa HOM05D008727 ORTHO05D023847 1.1e-22 110.9 170 40.0
Carub.0008s0091 Capsella rubella HOM05D001445 ORTHO05D001261 1.1e-22 110.9 179 37.4
A02p30610 Brassica napus HOM05D008727 ORTHO05D023847 1.4e-22 110.5 170 40.0
AL8G11330 Arabidopsis lyrata HOM05D001445 ORTHO05D001261 2.3e-22 109.8 176 35.2
CARHR174500 Cardamine hirsuta HOM05D001445 ORTHO05D001261 3.1e-22 109.4 177 35.0
C02p48090 Brassica napus HOM05D001445 ORTHO05D001261 4.0e-22 109.0 167 38.9
BolC2t10840H Brassica oleracea HOM05D001445 ORTHO05D001261 4.0e-22 109.0 167 38.9
CARHR174480 Cardamine hirsuta HOM05D001445 ORTHO05D001261 4.0e-22 109.0 154 41.6
A02p30500 Brassica napus HOM05D001445 ORTHO05D001261 8.9e-22 107.8 167 38.3
BraA02t08068Z Brassica rapa HOM05D001445 ORTHO05D001261 8.9e-22 107.8 167 38.3
Aa31sc241G60 Aethionema arabicum HOM05D001445 ORTHO05D001261 1.5e-21 107.1 177 36.7
Carub.0008s0092 Capsella rubella HOM05D001445 ORTHO05D001261 2.6e-21 106.3 171 37.4
AT5G46940 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 3.4e-21 105.9 176 34.1
Thhalv10001105m.g Eutrema salsugineum HOM05D001445 ORTHO05D001261 3.4e-21 105.9 166 36.7
Aa31sc241G40 Aethionema arabicum HOM05D001445 ORTHO05D001261 7.5e-21 104.8 177 37.3
AL8G11300 Arabidopsis lyrata HOM05D008727 ORTHO05D011379 2.9e-20 102.8 146 39.7
BcaC06g31448 Brassica carinata HOM05D001445 ORTHO05D001261 3.7e-20 102.4 176 34.1
Carub.0008s0090 Capsella rubella HOM05D001445 ORTHO05D001261 2.4e-19 99.8 167 33.5
A02p30590 Brassica napus HOM05D001445 ORTHO05D001261 9.2e-19 97.8 167 34.1
TWI15G1112 Tripterygium wilfordii HOM05D001445 ORTHO05D001261 9.2e-19 97.8 170 32.4
CANSAT21G0328 Cannabis sativa HOM05D001445 ORTHO05D001261 1.2e-18 97.4 176 27.8
BraA02t08076Z Brassica rapa HOM05D001445 ORTHO05D001261 1.6e-18 97.1 168 35.1
A02p30580 Brassica napus HOM05D001445 ORTHO05D001261 2.7e-18 96.3 168 35.1
Thhalv10001199m.g Eutrema salsugineum HOM05D001445 ORTHO05D001261 3.5e-18 95.9 165 35.8
A02p30180 Brassica napus HOM05D001445 ORTHO05D001261 6.0e-18 95.1 167 32.3
C02p47650 Brassica napus HOM05D001445 ORTHO05D001261 7.8e-18 94.7 167 32.9
BolC2t10801H Brassica oleracea HOM05D001445 ORTHO05D001261 7.8e-18 94.7 167 32.9
BraA02t08034Z Brassica rapa HOM05D001445 ORTHO05D001261 7.8e-18 94.7 167 32.3
AL8G11320 Arabidopsis lyrata HOM05D001445 ORTHO05D001261 1.0e-17 94.4 167 31.7
BcaC03g16912 Brassica carinata HOM05D001445 ORTHO05D001261 1.0e-17 94.4 167 34.1
BcaC03g16913 Brassica carinata HOM05D001445 ORTHO05D001261 1.0e-17 94.4 167 32.9
C02p48140 Brassica napus HOM05D001445 ORTHO05D001261 1.0e-17 94.4 167 34.1
C02p48150 Brassica napus HOM05D001445 ORTHO05D001261 1.0e-17 94.4 167 32.9
BolC2t10846H Brassica oleracea HOM05D001445 ORTHO05D001261 1.0e-17 94.4 167 34.1
BolC2t10847H Brassica oleracea HOM05D001445 ORTHO05D001261 1.0e-17 94.4 167 32.9
Sp2g11730 Schrenkiella parvula HOM05D001445 ORTHO05D001261 3.0e-17 92.8 167 34.7
BcaB07g30808 Brassica carinata HOM05D001445 ORTHO05D001261 3.9e-17 92.4 167 32.9
BcaC03g16868 Brassica carinata HOM05D001445 ORTHO05D001261 3.9e-17 92.4 167 33.5
A02p30560 Brassica napus HOM05D001445 ORTHO05D001261 3.9e-17 92.4 168 33.9
BraA02t08073Z Brassica rapa HOM05D001445 ORTHO05D001261 8.6e-17 91.3 168 33.3
Ciclev10033644m.g Citrus clementina HOM05D001445 ORTHO05D001261 1.5e-16 90.5 174 29.3
BraA06t27437Z Brassica rapa HOM05D001445 ORTHO05D001261 4.3e-16 89.0 178 31.5
MD06G1042400 Malus domestica HOM05D001445 ORTHO05D001261 4.3e-16 89.0 179 29.1
BraA06t27413Z Brassica rapa HOM05D001445 ORTHO05D001261 5.6e-16 88.6 173 35.3
A06p45680 Brassica napus HOM05D001445 ORTHO05D001261 7.3e-16 88.2 178 31.5
BcaC06g34301 Brassica carinata HOM05D008727 ORTHO05D011379 1.2e-15 87.4 123 39.8
BolC3t18500H Brassica oleracea HOM05D001445 ORTHO05D001261 1.6e-15 87.0 176 29.0
Duzib205G0415 Durio zibethinus HOM05D001445 ORTHO05D001261 1.6e-15 87.0 165 30.3
BcaC03g16906 Brassica carinata HOM05D001445 ORTHO05D001261 2.1e-15 86.7 159 34.0
BcaC06g31431 Brassica carinata HOM05D001445 ORTHO05D001261 2.1e-15 86.7 178 31.5
C03p62420 Brassica napus HOM05D001445 ORTHO05D001261 3.6e-15 85.9 176 28.4
TAR629G3049 Trochodendron aralioides HOM05D001445 ORTHO05D001261 3.6e-15 85.9 170 30.6
Thecc.03G235500 Theobroma cacao HOM05D001445 ORTHO05D001261 4.7e-15 85.5 174 28.2
BraA02t08078Z Brassica rapa HOM05D001445 ORTHO05D001261 8.1e-15 84.7 167 30.5
A06p45450 Brassica napus HOM05D001445 ORTHO05D001261 1.4e-14 84.0 173 34.1
Prupe.5G048900 Prunus persica HOM05D001445 ORTHO05D001261 1.4e-14 84.0 171 27.5
CARHR174490 Cardamine hirsuta HOM05D001445 ORTHO05D001261 3.1e-14 82.8 166 30.1
BcaC06g34307 Brassica carinata HOM05D001445 ORTHO05D001261 4.0e-14 82.4 173 32.9
C07p30520 Brassica napus HOM05D001445 ORTHO05D001261 4.0e-14 82.4 173 32.9
BolC7t43593H Brassica oleracea HOM05D001445 ORTHO05D001261 4.0e-14 82.4 173 32.9
Eucgr.E00321 Eucalyptus grandis HOM05D001445 ORTHO05D001261 5.2e-14 82.0 165 27.9
TAR375G1152 Trochodendron aralioides HOM05D001445 ORTHO05D001261 5.2e-14 82.0 173 27.7
AT5G46950 Arabidopsis thaliana HOM05D001445 ORTHO05D001261 1.2e-13 80.9 176 29.5
Psat4g219240 Pisum sativum HOM05D001445 ORTHO05D001261 1.5e-13 80.5 181 26.0
Duzib084G0977 Durio zibethinus HOM05D001445 ORTHO05D001261 2.0e-13 80.1 171 28.7
CiPaw.13G022000 Carya illinoinensis HOM05D001445 ORTHO05D001261 3.4e-13 79.3 163 29.4
QL04p026153 Quercus lobata HOM05D001445 ORTHO05D001261 3.4e-13 79.3 169 28.4
PSO782G5274 Papaver somniferum HOM05D001445 ORTHO05D001261 5.8e-13 78.6 159 28.9
Medtr8g009300 Medicago truncatula HOM05D001445 ORTHO05D001261 7.6e-13 78.2 173 26.6
Aqoxy3G02555 Aquilegia oxysepala HOM05D001445 ORTHO05D001261 9.9e-13 77.8 172 28.5
MD07G1088700 Malus domestica HOM05D001445 ORTHO05D001261 2.9e-12 76.3 172 27.9
TPR.G39508 Trifolium pratense HOM05D001445 ORTHO05D001261 2.9e-12 76.3 173 26.6
Phvul.003G227500 Phaseolus vulgaris HOM05D001445 ORTHO05D001261 3.7e-12 75.9 177 27.7
Manes.15G171900 Manihot esculenta HOM05D001445 ORTHO05D001261 4.9e-12 75.5 177 27.1
Dinv28905 Davidia involucrata HOM05D001445 ORTHO05D001261 6.4e-12 75.1 124 32.3
TAR073G0001 Trochodendron aralioides HOM05D001445 ORTHO05D001261 1.1e-11 74.3 164 28.0
TAR375G0630 Trochodendron aralioides HOM05D001445 ORTHO05D001261 1.4e-11 73.9 174 26.4
PSO478G2336 Papaver somniferum HOM05D001445 ORTHO05D001261 1.9e-11 73.6 145 26.9
MELO3C003367.2 Cucumis melo HOM05D001445 ORTHO05D001261 2.4e-11 73.2 152 25.7
Dinv25174 Davidia involucrata HOM05D001445 ORTHO05D001261 2.4e-11 73.2 156 26.3
BcaC01g02648 Brassica carinata HOM05D001445 ORTHO05D001261 4.1e-11 72.4 168 27.4
CAN.G756.16 Capsicum annuum HOM05D001445 ORTHO05D001261 4.1e-11 72.4 171 26.3
PSO478G4988 Papaver somniferum HOM05D001445 ORTHO05D001261 4.1e-11 72.4 161 28.6
Phvul.010G041500 Phaseolus vulgaris HOM05D001445 ORTHO05D001261 4.1e-11 72.4 174 27.0
VMungo0331G1992 Vigna mungo HOM05D001445 ORTHO05D001261 4.1e-11 72.4 169 26.6
Sed0025391 Sechium edule HOM05D001445 ORTHO05D001261 5.4e-11 72.0 166 24.1
PSO782G0985 Papaver somniferum HOM05D001445 ORTHO05D001261 7.1e-11 71.6 152 28.9
RcHm_v2.0_Chr7g0207981 Rosa chinensis HOM05D001445 ORTHO05D001261 9.2e-11 71.2 163 30.1
CSS0012427 Camellia sinensis var. sinensis HOM05D001445 ORTHO05D001261 1.6e-10 70.5 154 26.0
Cpa.g.sc52.69 Carica papaya HOM05D001445 ORTHO05D001261 1.6e-10 70.5 153 27.5
RcHm_v2.0_Chr7g0208771 Rosa chinensis HOM05D001445 ORTHO05D001261 1.6e-10 70.5 159 27.0
Glyma.03G103400 Glycine max HOM05D001445 ORTHO05D001261 3.5e-10 69.3 174 25.9
Manes.05G058600 Manihot esculenta HOM05D001445 ORTHO05D001261 4.6e-10 68.9 146 25.3
BolC9t55775H Brassica oleracea HOM05D001445 ORTHO05D001261 6.0e-10 68.6 116 36.2
Duzib133G0634 Durio zibethinus HOM05D001445 ORTHO05D001261 6.0e-10 68.6 160 24.4
CANSAT21G0723 Cannabis sativa HOM05D001445 ORTHO05D001261 1.0e-09 67.8 165 26.1
Prupe.5G048600 Prunus persica HOM05D001445 ORTHO05D001261 1.3e-09 67.4 170 25.3
Cpa.g.sc52.68 Carica papaya HOM05D001445 ORTHO05D001261 1.7e-09 67.0 166 26.5
FAN08G3072 Fragaria x ananassa HOM05D001445 ORTHO05D001261 1.7e-09 67.0 140 28.6
FAN18G2178 Fragaria x ananassa HOM05D001445 ORTHO05D001261 3.0e-09 66.2 140 28.6
FAN13G3027 Fragaria x ananassa HOM05D001445 ORTHO05D001261 5.1e-09 65.5 163 27.6
Potri.003G086600 Populus trichocarpa HOM05D001445 ORTHO05D001261 5.1e-09 65.5 157 26.1
FvH4_5g20930 Fragaria vesca HOM05D001445 ORTHO05D001261 6.6e-09 65.1 163 27.6
AUR62025289 Chenopodium quinoa HOM05D001445 ORTHO05D001261 2.5e-08 63.2 168 22.6
BraA09t37874Z Brassica rapa HOM05D001445 ORTHO05D001261 3.3e-08 62.8 116 33.6
BraA09t37873Z Brassica rapa HOM05D001445 ORTHO05D001261 4.3e-08 62.4 177 26.0
PSO782G4884 Papaver somniferum HOM05D001445 ORTHO05D001261 5.6e-08 62.0 146 26.7
A09p22680 Brassica napus HOM05D001445 ORTHO05D001261 7.3e-08 61.6 177 26.0
C09p29180 Brassica napus HOM05D001445 ORTHO05D001261 7.3e-08 61.6 116 34.5
Duzib205G1605 Durio zibethinus HOM05D001445 ORTHO05D001261 7.3e-08 61.6 172 28.5
Peaxi162Scf00084g00062 Petunia axillaris HOM05D001445 ORTHO05D001261 7.3e-08 61.6 148 24.3
vmacro00361 Vaccinium macrocarpon HOM05D001445 ORTHO05D001261 7.3e-08 61.6 152 25.7
Ciclev10032808m.g Citrus clementina HOM05D001445 ORTHO05D001261 9.6e-08 61.2 148 25.0
TWI81G0308 Tripterygium wilfordii HOM05D001445 ORTHO05D001261 9.6e-08 61.2 173 26.6
Actinidia25936 Actinidia chinensis HOM05D001445 ORTHO05D001261 1.2e-07 60.8 131 26.7
Hma1.2p1_0311F.1_g121180 Hydrangea macrophylla HOM05D001445 ORTHO05D001261 1.2e-07 60.8 161 25.5
BcaB08g36203 Brassica carinata HOM05D001445 ORTHO05D001261 2.8e-07 59.7 93 33.3
Eucgr.D01174 Eucalyptus grandis HOM05D001445 ORTHO05D001261 3.6e-07 59.3 162 21.6
BolC7t43597H Brassica oleracea HOM05D008727 ORTHO05D040202 1.1e-06 57.8 60 48.3
Ca_22038_v3 Cicer arietinum L. HOM05D001445 ORTHO05D001261 1.1e-06 57.8 171 22.2
EL10Ac1g00256 Beta vulgaris HOM05D001445 ORTHO05D001261 1.4e-06 57.4 142 23.2
Lsat_1_v5_gn_4_38540 Lactuca sativa HOM05D001445 ORTHO05D001261 1.4e-06 57.4 167 25.7
Migut.H00735 Erythranthe guttata HOM05D004113 ORTHO05D005233 1.8e-06 57.0 148 25.0
Psat0s116g0280 Pisum sativum HOM05D000064 ORTHO05D001353 4.0e-06 55.8 158 22.8
PSO782G2009 Papaver somniferum HOM05D001445 ORTHO05D001261 6.8e-06 55.1 151 23.8
Sc07g0008920 Simmondsia chinensis HOM05D001445 ORTHO05D001261 6.8e-06 55.1 154 24.7
C07p30580 Brassica napus HOM05D008727 ORTHO05D040202 8.9e-06 54.7 53 50.9


User provided reference genes

Program Settings