Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0038 Capsella rubella HOM05D006677 ORTHO05D008348 0.0e+00 1582.8 791 100.0
AL8G10640 Arabidopsis lyrata HOM05D006677 ORTHO05D008348 0.0e+00 1450.6 792 90.9
AT5G47400 Arabidopsis thaliana HOM05D006677 ORTHO05D008348 0.0e+00 1418.3 794 89.3
CARHR173970 Cardamine hirsuta HOM05D006677 ORTHO05D008348 0.0e+00 1411.7 793 88.5
Thhalv10000783m.g Eutrema salsugineum HOM05D006677 ORTHO05D008348 0.0e+00 1401.0 791 87.5
Sp2g12115 Schrenkiella parvula HOM05D006677 ORTHO05D008348 0.0e+00 1374.8 791 85.8
BolC7t43648H Brassica oleracea HOM05D006677 ORTHO05D008348 0.0e+00 1354.0 787 85.6
BcaC06g34255 Brassica carinata HOM05D006677 ORTHO05D008348 0.0e+00 1353.2 794 85.4
C07p31040 Brassica napus HOM05D006677 ORTHO05D008348 0.0e+00 1351.3 787 85.6
A06p45110 Brassica napus HOM05D006677 ORTHO05D008348 0.0e+00 1324.3 792 84.3
BraA06t27381Z Brassica rapa HOM05D006677 ORTHO05D008348 0.0e+00 1286.2 787 83.0
Aa31sc151G40 Aethionema arabicum HOM05D006677 ORTHO05D008348 0.0e+00 1216.8 748 80.9
BcaC06g31390 Brassica carinata HOM05D006677 ORTHO05D008348 0.0e+00 1164.8 660 86.5
BcaC06g31392 Brassica carinata HOM05D006677 ORTHO05D008348 0.0e+00 1155.2 777 77.2
THA.LOC104806670 Tarenaya hassleriana HOM05D006677 ORTHO05D008348 0.0e+00 1113.2 792 71.1
COL.COLO4_37128 Corchorus olitorius HOM05D006677 ORTHO05D008348 8.3e-271 937.2 801 60.3
Thecc.03G248200 Theobroma cacao HOM05D006677 ORTHO05D008348 1.5e-267 926.4 800 59.9
CANSAT21G0792 Cannabis sativa HOM05D006677 ORTHO05D008348 4.3e-267 924.9 801 58.3
Gorai.008G233700 Gossypium raimondii HOM05D006677 ORTHO05D008348 5.8e-264 914.4 797 58.7
Atru.chr9.1276 Acer truncatum HOM05D006677 ORTHO05D008348 1.4e-262 909.8 795 58.4
Gohir.D12G218100 Gossypium hirsutum HOM05D006677 ORTHO05D008348 2.4e-262 909.1 797 58.5
Ciclev10018892m.g Citrus clementina HOM05D006677 ORTHO05D008348 1.2e-261 906.7 804 57.6
Gohir.A12G215500 Gossypium hirsutum HOM05D006677 ORTHO05D008348 6.6e-260 901.0 794 57.9
MD06G1053300 Malus domestica HOM05D006677 ORTHO05D008348 1.2e-258 896.7 805 57.4
MD04G1060300 Malus domestica HOM05D006677 ORTHO05D008348 1.4e-254 883.2 808 56.4
Duzib068G0477 Durio zibethinus HOM05D006677 ORTHO05D008348 4.2e-254 881.7 800 57.5
RcHm_v2.0_Chr7g0203921 Rosa chinensis HOM05D006677 ORTHO05D008348 4.2e-254 881.7 793 56.9
Hma1.2p1_0316F.1_g122840 Hydrangea macrophylla HOM05D006677 ORTHO05D008348 1.3e-252 876.7 799 56.3
Manes.02G041400 Manihot esculenta HOM05D006677 ORTHO05D008348 3.9e-252 875.2 802 55.9
Cfa012688 Carpinus fangiana HOM05D006677 ORTHO05D008348 8.7e-252 874.0 797 57.3
Prupe.5G065400 Prunus persica HOM05D006677 ORTHO05D008348 2.1e-250 869.4 803 55.9
Haze_07944 Corylus avellana HOM05D006677 ORTHO05D008348 3.8e-247 858.6 856 53.4
FAN04G1892 Fragaria x ananassa HOM05D006677 ORTHO05D008348 3.8e-247 858.6 796 55.7
FAN13G0013 Fragaria x ananassa HOM05D006677 ORTHO05D008348 4.9e-247 858.2 793 55.6
FvH4_5g19410 Fragaria vesca HOM05D006677 ORTHO05D008348 1.1e-246 857.1 796 55.5
Potri.001G155800 Populus trichocarpa HOM05D006677 ORTHO05D008348 2.4e-246 855.9 797 56.2
PGR031G0681 Punica granatum HOM05D006677 ORTHO05D008348 4.2e-246 855.1 796 54.4
FAN08G3018 Fragaria x ananassa HOM05D006677 ORTHO05D008348 1.8e-244 849.7 796 55.4
FAN18G1193 Fragaria x ananassa HOM05D006677 ORTHO05D008348 6.7e-244 847.8 796 55.0
CAN.G1178.20 Capsicum annuum HOM05D006677 ORTHO05D008348 1.9e-243 846.3 804 53.7
Duzib205G2017 Durio zibethinus HOM05D006677 ORTHO05D008348 1.3e-242 843.6 800 56.4
CSS0025591 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 1.4e-241 840.1 799 54.2
Migut.A01134 Erythranthe guttata HOM05D006677 ORTHO05D008348 1.2e-240 837.0 796 53.0
Nitab4.5_0001381g0100 Nicotiana tabacum HOM05D006677 ORTHO05D008348 1.5e-240 836.6 792 54.0
Lj2C223G6 Lonicera japonica HOM05D006677 ORTHO05D008348 2.6e-240 835.9 799 54.2
TWI60G0317 Tripterygium wilfordii HOM05D006677 ORTHO05D008348 5.8e-240 834.7 796 52.8
TAR374G0600 Trochodendron aralioides HOM05D006677 ORTHO05D008348 9.9e-240 833.9 807 54.5
CiPaw.12G050300 Carya illinoinensis HOM05D006677 ORTHO05D008348 1.7e-239 833.2 797 54.7
Sopen08g026930 Solanum pennellii HOM05D006677 ORTHO05D008348 4.9e-239 831.6 791 53.2
arahy.Tifrunner.gnm1.ann1.WU4RWF Arachis hypogaea HOM05D006677 ORTHO05D008348 1.9e-238 829.7 819 53.6
arahy.Tifrunner.gnm1.ann1.IBE8NF Arachis hypogaea HOM05D006677 ORTHO05D008348 7.1e-238 827.8 819 53.2
QL12p011426 Quercus lobata HOM05D006677 ORTHO05D008348 7.1e-238 827.8 852 52.3
Solyc08g078440.3 Solanum lycopersicum HOM05D006677 ORTHO05D008348 1.0e-236 823.9 791 53.1
vmacro14066 Vaccinium macrocarpon HOM05D006677 ORTHO05D008348 1.3e-236 823.5 794 54.4
Peaxi162Scf00209g00130 Petunia axillaris HOM05D006677 ORTHO05D008348 3.9e-236 822.0 791 53.5
Rhsim07G0111300 Rhododendron simsii HOM05D006677 ORTHO05D008348 4.8e-234 815.1 796 54.9
MSTRG.12123 Avicennia marina HOM05D006677 ORTHO05D008348 5.3e-233 811.6 790 51.9
CSS0006614 Camellia sinensis var. sinensis HOM05D006677 ORTHO05D008348 5.8e-232 808.1 799 52.7
SGA_v2.0_scaffold104G30177 Striga asiatica HOM05D006677 ORTHO05D008348 1.0e-231 807.4 810 50.2
Cc08_g12180 Coffea canephora HOM05D006677 ORTHO05D008348 1.7e-231 806.6 800 51.9
Hund14577 Selenicereus undatus HOM05D006677 ORTHO05D008348 3.8e-231 805.4 795 53.5
Rhsim07G0110800 Rhododendron simsii HOM05D006677 ORTHO05D008348 1.9e-230 803.1 817 53.5
Nn6g33880 Nelumbo nucifera HOM05D006677 ORTHO05D008348 1.6e-229 800.0 803 52.4
Sc22g0000980 Simmondsia chinensis HOM05D006677 ORTHO05D008348 3.5e-229 798.9 795 52.2
Ca_21980_v3 Cicer arietinum L. HOM05D006677 ORTHO05D008348 4.3e-227 792.0 802 52.0
Nitab4.5_0002289g0120 Nicotiana tabacum HOM05D006677 ORTHO05D008348 1.1e-225 787.3 793 51.8
Manes.01G083200 Manihot esculenta HOM05D006677 ORTHO05D008348 1.4e-225 786.9 798 51.5
AUR62019973 Chenopodium quinoa HOM05D006677 ORTHO05D008348 2.0e-224 783.1 798 52.0
AUR62007111 Chenopodium quinoa HOM05D006677 ORTHO05D008348 5.9e-224 781.6 796 52.1
Aqoxy7G00821 Aquilegia oxysepala HOM05D006677 ORTHO05D008348 8.5e-223 777.7 810 50.1
Lj4g0000262 Lotus japonicus HOM05D006677 ORTHO05D008348 1.1e-222 777.3 807 51.2
Dinv21656 Davidia involucrata HOM05D006677 ORTHO05D008348 2.7e-221 772.7 633 60.8
DCAR_004989 Daucus carota HOM05D006677 ORTHO05D008348 1.5e-219 766.9 793 49.8
HanXRQChr16g0501081 Helianthus annuus HOM05D006677 ORTHO05D008348 2.2e-218 763.1 797 49.8
Lalb_Chr05g0221161 Lupinus albus HOM05D006677 ORTHO05D008348 2.2e-218 763.1 789 51.2
SalBow6G5281 Salvia bowleyana HOM05D006677 ORTHO05D008348 6.3e-218 761.5 847 47.5
Ah.12g054330 Amaranthus hybridus HOM05D006677 ORTHO05D008348 3.4e-216 755.7 797 51.1
EL10Ac5g12357 Beta vulgaris HOM05D006677 ORTHO05D008348 7.7e-216 754.6 794 50.9
Medtr4g100700 Medicago truncatula HOM05D006677 ORTHO05D008348 7.9e-213 744.6 809 49.7
Glyma.17G143800 Glycine max HOM05D006677 ORTHO05D008348 1.4e-212 743.8 798 51.0
Actinidia26803 Actinidia chinensis HOM05D006677 ORTHO05D008348 5.1e-212 741.9 640 58.0
Phvul.003G222500 Phaseolus vulgaris HOM05D006677 ORTHO05D008348 2.9e-207 726.1 796 50.4
Lsat_1_v5_gn_6_18041 Lactuca sativa HOM05D006677 ORTHO05D008348 3.2e-206 722.6 797 47.6
VMungo0251G0668 Vigna mungo HOM05D006677 ORTHO05D008348 6.1e-205 718.4 797 49.7
ECA233G6125 Erigeron canadensis HOM05D006677 ORTHO05D008348 2.6e-203 713.0 743 49.7
HanXRQChr08g0227751 Helianthus annuus HOM05D006677 ORTHO05D008348 2.8e-202 709.5 797 46.5
CDE11G0086 Ceratophyllum demersum HOM05D006677 ORTHO05D008348 5.3e-201 705.3 782 47.7
Psat4g072920 Pisum sativum HOM05D006677 ORTHO05D008348 9.1e-201 704.5 780 49.4
Oeu017057.2 Olea europaea HOM05D006677 ORTHO05D008348 1.9e-190 670.2 820 46.7
HPP92_022463 Vanilla planifolia HOM05D006677 ORTHO05D008348 9.4e-190 667.9 820 44.8
Eucgr.D02100 Eucalyptus grandis HOM05D006677 ORTHO05D008348 2.5e-174 616.7 591 55.5
Sabra01G0125500 Salix brachista HOM05D006677 ORTHO05D008348 8.9e-172 608.2 649 51.8
Glyma.05G062000 Glycine max HOM05D006677 ORTHO05D008348 4.3e-158 562.8 600 51.2
ATR0057G118 Amborella trichopoda HOM05D006677 ORTHO05D008348 3.2e-153 546.6 812 40.8
Zm00001eb000330 Zea mays HOM05D006677 ORTHO05D008348 1.1e-134 485.0 791 38.9
unitig_21.g20314 Utricularia gibba HOM05D006677 ORTHO05D008348 4.3e-110 403.3 803 35.0
Pp3c19_23280 Physcomitrium patens HOM05D006677 ORTHO05D008348 4.3e-102 376.7 859 34.0
Actinidia10841 Actinidia chinensis HOM05D006677 ORTHO05D008348 4.2e-97 360.1 795 34.1
TPR.G36090 Trifolium pratense HOM05D006677 ORTHO05D008348 7.2e-89 332.8 411 45.5
GSVIVG01006276001 Vitis vinifera HOM05D006677 ORTHO05D008348 2.6e-86 324.3 256 61.7
AagrBONN_evm.TU.Sc2ySwM_228.2440 Anthoceros agrestis HOM05D006677 ORTHO05D008348 2.0e-83 314.7 868 29.4
TPR.G37689 Trifolium pratense HOM05D006677 ORTHO05D008348 1.2e-78 298.9 300 51.3
Cpa.g.sc3684.1 Carica papaya HOM05D006677 ORTHO05D008348 3.4e-70 270.8 255 55.3
DCAR_004986 Daucus carota HOM05D006677 ORTHO05D008348 5.4e-68 263.5 294 48.3
GSVIVG01006275001 Vitis vinifera HOM05D006677 ORTHO05D000005 1.2e-67 262.3 256 54.3
DCAR_004979 Daucus carota HOM05D006677 ORTHO05D008348 1.6e-67 261.9 295 47.1
TAR365G0661 Trochodendron aralioides HOM05D006677 ORTHO05D008348 1.4e-60 238.8 364 40.4
TAR633G2042 Trochodendron aralioides HOM05D006677 ORTHO05D008348 9.5e-41 172.9 177 49.7
TAR629G1120 Trochodendron aralioides HOM05D006677 ORTHO05D008348 2.2e-37 161.8 140 57.1
CBR_g16835 Chara braunii HOM05D000019 ORTHO05D000048 3.7e-37 161.0 1042 22.5
DCAR_004983 Daucus carota HOM05D006677 ORTHO05D008348 6.6e-34 150.2 230 40.0
DCAR_004974 Daucus carota HOM05D006677 ORTHO05D008348 8.1e-32 143.3 214 39.7
Os10g0560500 Oryza sativa ssp. japonica HOM05D006677 ORTHO05D008348 2.6e-30 138.3 256 35.2
CAN.G26.36 Capsicum annuum HOM05D006677 ORTHO05D008348 9.3e-28 129.8 169 42.6
DCAR_004984 Daucus carota HOM05D006677 ORTHO05D008348 6.0e-27 127.1 87 66.7
MCO13G224 Micromonas commoda HOM05D006677 ORTHO05D008348 6.2e-24 117.1 853 21.9
BcaC06g34257 Brassica carinata HOM05D006677 ORTHO05D008348 4.0e-15 87.8 63 73.0
Cre06.g278126 Chlamydomonas reinhardtii HOM05D006677 ORTHO05D008348 6.9e-15 87.0 237 29.1
TPR.G36480 Trifolium pratense HOM05D004733 ORTHO05D008348 7.1e-12 77.0 46 73.9
DCAR_004972 Daucus carota HOM05D006677 ORTHO05D008348 1.6e-11 75.9 122 40.2
CAN.G1178.24 Capsicum annuum HOM05D006677 ORTHO05D008348 1.5e-06 59.3 68 45.6


User provided reference genes

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