Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0008s0032 Capsella rubella HOM05D006762 ORTHO05D003505 5.0e-46 187.6 106 100.0
CARHR173910 Cardamine hirsuta HOM05D006762 ORTHO05D003505 1.5e-42 176.0 104 94.2
AL8G10530 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 7.8e-39 163.7 98 95.9
AT5G47455 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 8.6e-38 160.2 99 91.9
Thhalv10001082m.g Eutrema salsugineum HOM05D006762 ORTHO05D003505 2.0e-34 149.1 95 89.5
Sp2g12170 Schrenkiella parvula HOM05D006762 ORTHO05D003505 4.4e-34 147.9 95 89.5
BcaC06g31384 Brassica carinata HOM05D006762 ORTHO05D003505 5.7e-34 147.5 95 89.5
BcaC03g16962 Brassica carinata HOM05D006762 ORTHO05D003505 3.7e-33 144.8 95 87.4
C02p48680 Brassica napus HOM05D006762 ORTHO05D003505 3.7e-33 144.8 95 87.4
BolC2t10960H Brassica oleracea HOM05D006762 ORTHO05D003505 3.7e-33 144.8 95 87.4
BolC7t43652H Brassica oleracea HOM05D006762 ORTHO05D003505 3.7e-33 144.8 96 86.5
BcaC06g31382 Brassica carinata HOM05D006762 ORTHO05D003505 6.4e-33 144.1 95 88.4
BraA06t27376Z Brassica rapa HOM05D006762 ORTHO05D003505 6.4e-33 144.1 96 84.4
BcaC06g34251 Brassica carinata HOM05D006762 ORTHO05D003505 8.3e-33 143.7 95 87.4
C07p31100 Brassica napus HOM05D006762 ORTHO05D003505 8.3e-33 143.7 95 87.4
A06p45070 Brassica napus HOM05D006762 ORTHO05D003505 4.1e-32 141.4 95 84.2
Aa31csc22G110 Aethionema arabicum HOM05D006762 ORTHO05D003505 1.3e-30 136.3 95 81.1
A02p31340 Brassica napus HOM05D006762 ORTHO05D003505 7.3e-29 130.6 95 82.1
BraA02t08136Z Brassica rapa HOM05D006762 ORTHO05D003505 7.3e-29 130.6 95 82.1
Carub.0007s2409 Capsella rubella HOM05D006762 ORTHO05D003505 1.6e-28 129.4 103 74.8
CiPaw.12G051800 Carya illinoinensis HOM05D006762 ORTHO05D003505 6.4e-25 117.5 104 64.4
AL7G37400 Arabidopsis lyrata HOM05D006762 ORTHO05D003505 3.5e-23 111.7 94 71.3
AT4G17310 Arabidopsis thaliana HOM05D006762 ORTHO05D003505 3.0e-22 108.6 103 66.0
vmacro21548 Vaccinium macrocarpon HOM05D006762 ORTHO05D003505 2.1e-20 102.4 95 62.1
Thecc.03G250100 Theobroma cacao HOM05D006762 ORTHO05D003505 1.8e-19 99.4 105 63.8
Sopen08g027040 Solanum pennellii HOM05D006762 ORTHO05D003505 6.8e-19 97.4 104 58.7
Rhsim07G0109700 Rhododendron simsii HOM05D006762 ORTHO05D003505 8.9e-19 97.1 97 59.8
Ciclev10023003m.g Citrus clementina HOM05D006762 ORTHO05D003505 1.2e-18 96.7 94 63.8
Actinidia27471 Actinidia chinensis HOM05D006762 ORTHO05D003505 1.5e-18 96.3 95 60.0
Hund14549 Selenicereus undatus HOM05D006762 ORTHO05D003505 2.0e-18 95.9 104 58.7
FvH4_5g19060 Fragaria vesca HOM05D006762 ORTHO05D003505 5.8e-18 94.4 100 61.0
Cpa.g.sc29.168 Carica papaya HOM05D006762 ORTHO05D003505 1.3e-17 93.2 94 63.8
Prupe.5G068300 Prunus persica HOM05D006762 ORTHO05D003505 1.7e-17 92.8 100 59.0
Lj8A263T41 Lonicera japonica HOM05D006762 ORTHO05D003505 2.9e-17 92.0 103 56.3
TWI81G0572 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 2.9e-17 92.0 109 57.8
HanXRQChr03g0087771 Helianthus annuus HOM05D006762 ORTHO05D003505 3.7e-17 91.7 95 58.9
Lsat_1_v5_gn_6_90840 Lactuca sativa HOM05D006762 ORTHO05D003505 3.7e-17 91.7 98 58.2
CiPaw.11G079800 Carya illinoinensis HOM05D006762 ORTHO05D003505 4.9e-17 91.3 95 58.9
Duzib084G1100 Durio zibethinus HOM05D006762 ORTHO05D003505 6.4e-17 90.9 104 60.6
Duzib205G1027 Durio zibethinus HOM05D006762 ORTHO05D003505 6.4e-17 90.9 99 61.6
GSVIVG01006992001 Vitis vinifera HOM05D006762 ORTHO05D003505 1.1e-16 90.1 95 56.8
PGR031G2035 Punica granatum HOM05D006762 ORTHO05D003505 2.4e-16 89.0 99 60.6
Sabra16G0215100 Salix brachista HOM05D006762 ORTHO05D003505 5.4e-16 87.8 94 66.0
GSVIVG01004713001 Vitis vinifera HOM05D006762 ORTHO05D003505 7.1e-16 87.4 95 55.8
COL.COLO4_37166 Corchorus olitorius HOM05D006762 ORTHO05D003505 9.2e-16 87.0 96 63.5
Dinv39153 Davidia involucrata HOM05D000502 ORTHO05D000356 9.2e-16 87.0 106 51.9
Glyma.05G060100 Glycine max HOM05D006762 ORTHO05D003505 9.2e-16 87.0 104 56.7
QL12p012005 Quercus lobata HOM05D006762 ORTHO05D003505 9.2e-16 87.0 95 60.0
MD04G1063100 Malus domestica HOM05D006762 ORTHO05D003505 1.6e-15 86.3 93 60.2
Migut.A01106 Erythranthe guttata HOM05D006762 ORTHO05D003505 2.1e-15 85.9 97 58.8
Manes.01G081200 Manihot esculenta HOM05D006762 ORTHO05D003505 4.6e-15 84.7 95 61.1
Potri.001G333800 Populus trichocarpa HOM05D006762 ORTHO05D003505 4.6e-15 84.7 94 63.8
THA.LOC104812806 Tarenaya hassleriana HOM05D006762 ORTHO05D003505 4.6e-15 84.7 95 61.1
Potri.017G068600 Populus trichocarpa HOM05D006762 ORTHO05D003505 6.0e-15 84.3 94 57.4
Glyma.17G142500 Glycine max HOM05D006762 ORTHO05D003505 1.3e-14 83.2 104 55.8
PGSC0003DMG400004817 Solanum tuberosum HOM05D006762 ORTHO05D003505 1.7e-14 82.8 95 54.7
SalBow6G0204 Salvia bowleyana HOM05D006762 ORTHO05D003505 5.1e-14 81.3 95 57.9
SalBow6G1716 Salvia bowleyana HOM05D006762 ORTHO05D003505 5.1e-14 81.3 95 56.8
MELO3C013933.2 Cucumis melo HOM05D006762 ORTHO05D003505 8.6e-14 80.5 94 56.4
CsaV3_3G002630 Cucumis sativus L. HOM05D006762 ORTHO05D003505 8.6e-14 80.5 94 56.4
FAN13G0097 Fragaria x ananassa HOM05D000502 ORTHO05D000356 8.6e-14 80.5 94 57.4
RcHm_v2.0_Chr7g0203511 Rosa chinensis HOM05D006762 ORTHO05D003505 8.6e-14 80.5 92 59.8
MSTRG.12104 Avicennia marina HOM05D006762 ORTHO05D003505 1.1e-13 80.1 96 57.3
CAN.G1058.38 Capsicum annuum HOM05D006762 ORTHO05D003505 1.9e-13 79.3 95 52.6
ECA240G1429 Erigeron canadensis HOM05D006762 ORTHO05D003505 1.9e-13 79.3 96 53.1
Gohir.A08G169800 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.9e-13 79.3 98 62.2
Gohir.D08G188100 Gossypium hirsutum HOM05D006762 ORTHO05D003505 1.9e-13 79.3 98 62.2
ClCG10G002600 Citrullus lanatus HOM05D006762 ORTHO05D003505 2.5e-13 79.0 94 55.3
CANSAT21G1567 Cannabis sativa HOM05D006762 ORTHO05D003505 4.3e-13 78.2 96 55.2
Oeu020431.1 Olea europaea HOM05D006762 ORTHO05D003505 4.3e-13 78.2 95 57.9
FAN08G1018 Fragaria x ananassa HOM05D006762 ORTHO05D003505 7.3e-13 77.4 91 58.2
FAN18G2762 Fragaria x ananassa HOM05D006762 ORTHO05D003505 7.3e-13 77.4 91 58.2
FAN04G0434 Fragaria x ananassa HOM05D006762 ORTHO05D003505 1.6e-12 76.3 91 57.1
Gorai.004G198000 Gossypium raimondii HOM05D006762 ORTHO05D003505 1.6e-12 76.3 98 61.2
Gohir.A05G046400 Gossypium hirsutum HOM05D007429 ORTHO05D003505 2.1e-12 75.9 111 51.4
TWI60G1284 Tripterygium wilfordii HOM05D006762 ORTHO05D003505 2.1e-12 75.9 97 55.7
Nn6g35292 Nelumbo nucifera HOM05D007429 ORTHO05D003505 3.6e-12 75.1 108 52.8
Sed0021009 Sechium edule HOM05D006762 ORTHO05D003505 3.6e-12 75.1 94 54.3
CSS0021998 Camellia sinensis var. sinensis HOM05D006762 ORTHO05D003505 4.7e-12 74.7 104 51.9
Solyc08g078560.3 Solanum lycopersicum HOM05D006762 ORTHO05D003505 4.7e-12 74.7 95 52.6
TAR629G0824 Trochodendron aralioides HOM05D006762 ORTHO05D003505 6.2e-12 74.3 97 54.6
Lalb_Chr16g0386731 Lupinus albus HOM05D006762 ORTHO05D003505 1.8e-11 72.8 97 52.6
Lalb_Chr09g0330061 Lupinus albus HOM05D006762 ORTHO05D003505 3.1e-11 72.0 95 55.8
PSO824G0083 Papaver somniferum HOM05D007429 ORTHO05D003505 4.0e-11 71.6 58 69.0
Ciclev10010039m.g Citrus clementina HOM05D007429 ORTHO05D003505 6.8e-11 70.9 52 71.2
PSO173G0075 Papaver somniferum HOM05D007429 ORTHO05D003505 8.9e-11 70.5 66 65.2
Manes.02G040300 Manihot esculenta HOM05D006762 ORTHO05D003505 1.5e-10 69.7 95 52.6
Cc08_g12340 Coffea canephora HOM05D006762 ORTHO05D003505 2.6e-10 68.9 102 49.0
Medtr4g100820 Medicago truncatula HOM05D006762 ORTHO05D003505 3.4e-10 68.6 95 49.5
Nn6g33933 Nelumbo nucifera HOM05D006762 ORTHO05D003505 4.4e-10 68.2 96 52.1
ATR0317G117 Amborella trichopoda HOM05D006762 ORTHO05D003505 5.8e-10 67.8 101 49.5
Duzib168G1390 Durio zibethinus HOM05D007429 ORTHO05D003505 5.8e-10 67.8 108 48.1
SalBow4G0096 Salvia bowleyana HOM05D006762 ORTHO05D003505 5.8e-10 67.8 91 53.8
SalBow4G2872 Salvia bowleyana HOM05D006762 ORTHO05D003505 5.8e-10 67.8 91 53.8
Aqoxy7G00783 Aquilegia oxysepala HOM05D006762 ORTHO05D003505 7.6e-10 67.4 95 48.4
Prupe.1G447500 Prunus persica HOM05D007429 ORTHO05D003505 7.6e-10 67.4 55 65.5
Psat4g072480 Pisum sativum HOM05D006762 ORTHO05D003505 2.2e-09 65.9 95 47.4
TPR.G37627 Trifolium pratense HOM05D006762 ORTHO05D003505 2.2e-09 65.9 95 51.6
CANSAT25G2095 Cannabis sativa HOM05D007429 ORTHO05D003505 3.8e-09 65.1 106 46.2
TWI63G1379 Tripterygium wilfordii HOM05D007429 ORTHO05D003505 3.8e-09 65.1 58 65.5
Ca_21971_v3 Cicer arietinum L. HOM05D006762 ORTHO05D003505 6.4e-09 64.3 96 54.2
Sed0003359 Sechium edule HOM05D007429 ORTHO05D003505 6.4e-09 64.3 104 49.0
Thecc.09G045900 Theobroma cacao HOM05D007429 ORTHO05D003505 6.4e-09 64.3 58 65.5
FvH4_2g35460 Fragaria vesca HOM05D007429 ORTHO05D003505 1.1e-08 63.5 106 47.2
Lj4g0004620 Lotus japonicus HOM05D006762 ORTHO05D003505 1.4e-08 63.2 90 51.1
Lalb_Chr23g0269661 Lupinus albus HOM05D007429 ORTHO05D003505 1.4e-08 63.2 78 52.6
Zm00001eb186600 Zea mays HOM05D049586 ORTHO05D003505 1.9e-08 62.8 54 77.8
arahy.Tifrunner.gnm1.ann1.8JK4ZI Arachis hypogaea HOM05D006762 ORTHO05D003505 2.4e-08 62.4 50 70.0
arahy.Tifrunner.gnm1.ann1.YI4YN9 Arachis hypogaea HOM05D006762 ORTHO05D003505 2.4e-08 62.4 50 70.0
Phvul.003G221200 Phaseolus vulgaris HOM05D006762 ORTHO05D003505 2.4e-08 62.4 92 47.8
Gorai.009G049400 Gossypium raimondii HOM05D007429 ORTHO05D003505 3.2e-08 62.0 104 48.1
CiPaw.07G203700 Carya illinoinensis HOM05D007429 ORTHO05D003505 4.1e-08 61.6 64 56.2
Cc08_g09700 Coffea canephora HOM05D007429 ORTHO05D003505 4.1e-08 61.6 76 50.0
Glyma.18G109000 Glycine max HOM05D006762 ORTHO05D003505 4.1e-08 61.6 103 47.6
GSVIVG01035615001 Vitis vinifera HOM05D007429 ORTHO05D003505 5.4e-08 61.2 108 46.3
CDE04G0461 Ceratophyllum demersum HOM05D005822 ORTHO05D007267 7.1e-08 60.8 84 52.4
Gohir.D05G048100 Gossypium hirsutum HOM05D007429 ORTHO05D003505 9.2e-08 60.5 97 47.4
Nn8g39115 Nelumbo nucifera HOM05D007429 ORTHO05D003505 1.6e-07 59.7 80 53.8
Aqoxy7G01463 Aquilegia oxysepala HOM05D007429 ORTHO05D003505 2.7e-07 58.9 58 63.8
CDE12G0636 Ceratophyllum demersum HOM05D006762 ORTHO05D003505 3.5e-07 58.5 95 48.4
arahy.Tifrunner.gnm1.ann1.A5XQNM Arachis hypogaea HOM05D006762 ORTHO05D003505 4.6e-07 58.2 49 65.3
arahy.Tifrunner.gnm1.ann1.R0MHDP Arachis hypogaea HOM05D007429 ORTHO05D003505 6.0e-07 57.8 39 76.9
arahy.Tifrunner.gnm1.ann1.ZH3G1A Arachis hypogaea HOM05D007429 ORTHO05D003505 6.0e-07 57.8 39 76.9
HPP92_014491 Vanilla planifolia HOM05D006762 ORTHO05D003505 6.0e-07 57.8 113 50.4
Ca_15587_v3 Cicer arietinum L. HOM05D002792 ORTHO05D003039 1.0e-06 57.0 57 59.6
Thhalv10015136m.g Eutrema salsugineum HOM05D007429 ORTHO05D003505 1.3e-06 56.6 108 44.4
Lj1g0025254 Lotus japonicus HOM05D007429 ORTHO05D003505 1.3e-06 56.6 78 51.3
EL10Ac2g04004 Beta vulgaris HOM05D007429 ORTHO05D003505 1.7e-06 56.2 62 54.8
CARHR201590 Cardamine hirsuta HOM05D007429 ORTHO05D003505 1.7e-06 56.2 106 46.2
MELO3C003465.2 Cucumis melo HOM05D007429 ORTHO05D003505 1.7e-06 56.2 64 53.1
CsaV3_3G048540 Cucumis sativus L. HOM05D007429 ORTHO05D003505 1.7e-06 56.2 64 53.1
Nitab4.5_0000882g0040 Nicotiana tabacum HOM05D006762 ORTHO05D003505 1.7e-06 56.2 99 48.5
PGR031G3761 Punica granatum HOM05D007429 ORTHO05D003505 1.7e-06 56.2 108 42.6
Hund19504 Selenicereus undatus HOM05D007429 ORTHO05D003505 1.7e-06 56.2 59 57.6
TPR.G15111 Trifolium pratense HOM05D007429 ORTHO05D003505 1.7e-06 56.2 42 71.4
CDE04G0746 Ceratophyllum demersum HOM05D007429 ORTHO05D003505 2.3e-06 55.8 57 54.4
ClCG11G015140 Citrullus lanatus HOM05D007429 ORTHO05D003505 2.3e-06 55.8 64 54.7
arahy.Tifrunner.gnm1.ann1.D6ADVN Arachis hypogaea HOM05D006762 ORTHO05D003505 3.0e-06 55.5 49 65.3
MBI01_g42895_MAGBIO Magnolia biondii HOM05D007429 ORTHO05D003505 3.0e-06 55.5 43 67.4
Duzib187G1405 Durio zibethinus HOM05D007429 ORTHO05D003505 6.6e-06 54.3 90 46.7
FAN20G1676 Fragaria x ananassa HOM05D002792 ORTHO05D003039 6.6e-06 54.3 57 56.1
Glyma.17G210100 Glycine max HOM05D006762 ORTHO05D003505 6.6e-06 54.3 103 42.7
ECA233G1441 Erigeron canadensis HOM05D007429 ORTHO05D003505 8.6e-06 53.9 39 69.2
Gohir.A08G249800 Gossypium hirsutum HOM05D007429 ORTHO05D003505 8.6e-06 53.9 105 47.6
Phvul.009G110300 Phaseolus vulgaris HOM05D007429 ORTHO05D003505 8.6e-06 53.9 65 52.3


User provided reference genes

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