Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s3721 Capsella rubella HOM05D003749 ORTHO05D004421 2.5e-77 292.0 142 100.0
AT5G38650 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 2.9e-73 278.5 142 94.4
AT5G38660 Arabidopsis thaliana HOM05D006042 ORTHO05D007658 2.9e-73 278.5 142 94.4
CARHR214090 Cardamine hirsuta HOM05D003749 ORTHO05D004421 7.1e-72 273.9 142 93.0
Thhalv10027984m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 5.1e-70 267.7 142 89.4
Carub.0002s1352 Capsella rubella HOM05D003749 ORTHO05D004421 6.2e-68 260.8 142 87.3
THA.LOC104823870 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 6.2e-68 260.8 142 87.3
Aa31LG2G3620 Aethionema arabicum HOM05D003749 ORTHO05D004421 8.2e-68 260.4 142 86.6
Sp5g22180 Schrenkiella parvula HOM05D003749 ORTHO05D004421 1.2e-66 256.5 142 85.2
THA.LOC104805552 Tarenaya hassleriana HOM05D003749 ORTHO05D004421 1.5e-66 256.1 142 85.2
CARHR059720 Cardamine hirsuta HOM05D003749 ORTHO05D004421 2.0e-66 255.8 142 84.5
BcaB03g15341 Brassica carinata HOM05D003749 ORTHO05D004421 2.6e-66 255.4 142 84.5
AT1G67250 Arabidopsis thaliana HOM05D003749 ORTHO05D004421 5.8e-66 254.2 142 84.5
BcaC03g14820 Brassica carinata HOM05D003749 ORTHO05D004421 5.8e-66 254.2 142 84.5
A02p14100 Brassica napus HOM05D003749 ORTHO05D004421 5.8e-66 254.2 142 84.5
BolC2t08424H Brassica oleracea HOM05D003749 ORTHO05D004421 5.8e-66 254.2 142 84.5
Thhalv10019303m.g Eutrema salsugineum HOM05D003749 ORTHO05D004421 1.0e-65 253.4 142 84.5
C06p38830 Brassica napus HOM05D003749 ORTHO05D004421 2.2e-65 252.3 142 84.5
BolC6t38976H Brassica oleracea HOM05D003749 ORTHO05D004421 2.2e-65 252.3 142 84.5
C02p22710 Brassica napus HOM05D003749 ORTHO05D004421 2.9e-65 251.9 142 83.8
BraA02t06473Z Brassica rapa HOM05D003749 ORTHO05D004421 2.9e-65 251.9 142 83.8
A07p32660 Brassica napus HOM05D003749 ORTHO05D004421 6.5e-65 250.8 142 83.8
BraA07t30890Z Brassica rapa HOM05D003749 ORTHO05D004421 6.5e-65 250.8 142 83.8
BcaB05g24251 Brassica carinata HOM05D003749 ORTHO05D004421 8.4e-65 250.4 142 83.1
A07p33850 Brassica napus HOM05D003749 ORTHO05D004421 5.5e-64 247.7 142 82.4
BolC6t39133H Brassica oleracea HOM05D003749 ORTHO05D004421 5.5e-64 247.7 142 82.4
BraA07t31011Z Brassica rapa HOM05D003749 ORTHO05D004421 5.5e-64 247.7 142 82.4
BcaC08g46151 Brassica carinata HOM05D003749 ORTHO05D004421 2.7e-63 245.4 142 81.7
C06p43020 Brassica napus HOM05D003749 ORTHO05D004421 2.7e-63 245.4 142 81.7
BcaB03g15214 Brassica carinata HOM05D003749 ORTHO05D004421 3.5e-63 245.0 142 82.4
Sed0006006 Sechium edule HOM05D003749 ORTHO05D004421 6.7e-62 240.7 142 77.5
CiPaw.04G040000 Carya illinoinensis HOM05D003749 ORTHO05D004421 8.7e-62 240.4 142 77.5
Cpa.g.sc179.30 Carica papaya HOM05D003749 ORTHO05D004421 1.5e-61 239.6 142 76.8
CiPaw.03G059000 Carya illinoinensis HOM05D003749 ORTHO05D004421 1.9e-61 239.2 142 76.1
Cfa007953 Carpinus fangiana HOM05D003749 ORTHO05D004421 5.7e-61 237.7 142 76.8
AL2G25760 Arabidopsis lyrata HOM05D003749 ORTHO05D004421 9.7e-61 236.9 191 64.4
CsaV3_5G039100 Cucumis sativus L. HOM05D003749 ORTHO05D004421 1.3e-60 236.5 142 76.8
ClCG11G005320 Citrullus lanatus HOM05D003749 ORTHO05D004421 3.7e-60 235.0 142 75.4
MELO3C022086.2 Cucumis melo HOM05D003749 ORTHO05D004421 3.7e-60 235.0 142 75.4
PGR042G1179 Punica granatum HOM05D003749 ORTHO05D004421 3.7e-60 235.0 142 75.4
Atru.chr2.1608 Acer truncatum HOM05D003749 ORTHO05D004421 8.2e-60 233.8 140 75.7
Manes.02G066100 Manihot esculenta HOM05D003749 ORTHO05D004421 1.1e-59 233.4 142 75.4
QL02p052938 Quercus lobata HOM05D003749 ORTHO05D004421 1.1e-59 233.4 141 75.2
Peaxi162Scf00479g00114 Petunia axillaris HOM05D003749 ORTHO05D004421 1.4e-59 233.0 142 73.9
Manes.01G107800 Manihot esculenta HOM05D003749 ORTHO05D004421 2.4e-59 232.3 142 74.6
Prupe.3G240300 Prunus persica HOM05D003749 ORTHO05D004421 5.3e-59 231.1 142 76.1
Atru.chr8.949 Acer truncatum HOM05D003749 ORTHO05D004421 6.9e-59 230.7 142 73.9
Sopen02g034510 Solanum pennellii HOM05D003749 ORTHO05D004421 9.0e-59 230.3 142 73.2
Gorai.004G054900 Gossypium raimondii HOM05D003749 ORTHO05D004421 2.0e-58 229.2 142 75.4
PGSC0003DMG400010046 Solanum tuberosum HOM05D003749 ORTHO05D004421 2.0e-58 229.2 142 72.5
Solyc02g089820.4 Solanum lycopersicum HOM05D003749 ORTHO05D004421 2.6e-58 228.8 142 73.2
arahy.Tifrunner.gnm1.ann1.G4J1DJ Arachis hypogaea HOM05D003749 ORTHO05D004421 3.4e-58 228.4 141 75.2
TAR629G3198 Trochodendron aralioides HOM05D003749 ORTHO05D004421 3.4e-58 228.4 142 73.9
Gohir.D08G054500 Gossypium hirsutum HOM05D003749 ORTHO05D004421 5.9e-58 227.6 142 74.6
CSS0022784 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 7.6e-58 227.3 140 73.6
Nitab4.5_0009272g0030 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.0e-57 226.9 142 73.2
Thecc.04G138900 Theobroma cacao HOM05D003749 ORTHO05D004421 1.0e-57 226.9 142 74.6
Gohir.A08G044800 Gossypium hirsutum HOM05D003749 ORTHO05D004421 1.3e-57 226.5 142 74.6
CSS0014522 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 1.7e-57 226.1 140 72.9
Duzib138G1497 Durio zibethinus HOM05D003749 ORTHO05D004421 1.7e-57 226.1 142 75.4
arahy.Tifrunner.gnm1.ann1.M5A7E6 Arachis hypogaea HOM05D003749 ORTHO05D004421 2.2e-57 225.7 139 74.8
MD17G1073500 Malus domestica HOM05D003749 ORTHO05D004421 2.2e-57 225.7 142 73.2
Peaxi162Scf01056g00243 Petunia axillaris HOM05D003749 ORTHO05D004421 2.9e-57 225.3 142 70.4
Hund15121 Selenicereus undatus HOM05D003749 ORTHO05D004421 2.9e-57 225.3 141 71.6
CAN.G497.5 Capsicum annuum HOM05D003749 ORTHO05D004421 3.8e-57 224.9 142 70.4
Nn3g17694 Nelumbo nucifera HOM05D003749 ORTHO05D004421 3.8e-57 224.9 142 72.5
Duzib268G0352 Durio zibethinus HOM05D003749 ORTHO05D004421 5.0e-57 224.6 142 73.9
GSVIVG01036450001 Vitis vinifera HOM05D003749 ORTHO05D004421 5.0e-57 224.6 142 73.2
CANSAT64G0170 Cannabis sativa HOM05D003749 ORTHO05D004421 8.5e-57 223.8 142 73.2
Dinv33926 Davidia involucrata HOM05D003749 ORTHO05D004421 8.5e-57 223.8 142 71.1
LjContig00222g0005460 Lotus japonicus HOM05D003749 ORTHO05D004421 1.1e-56 223.4 141 73.8
MD09G1083200 Malus domestica HOM05D003749 ORTHO05D004421 1.1e-56 223.4 142 72.5
CDE01G0232 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.9e-56 222.6 142 70.4
Nitab4.5_0003461g0020 Nicotiana tabacum HOM05D003749 ORTHO05D004421 7.2e-56 220.7 142 69.0
Sp7g03260 Schrenkiella parvula HOM05D003749 ORTHO05D004421 7.2e-56 220.7 142 78.9
Lalb_Chr16g0376641 Lupinus albus HOM05D003749 ORTHO05D004421 9.3e-56 220.3 141 72.3
CDE02G3838 Ceratophyllum demersum HOM05D003749 ORTHO05D004421 1.2e-55 219.9 142 70.4
TAR374G0647 Trochodendron aralioides HOM05D003749 ORTHO05D004421 2.7e-55 218.8 142 70.4
Actinidia18121 Actinidia chinensis HOM05D003749 ORTHO05D004421 4.6e-55 218.0 141 70.2
Hma1.2p1_0550F.1_g177200 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 4.6e-55 218.0 142 69.7
Hma1.2p1_0550F.1_g177205 Hydrangea macrophylla HOM05D003749 ORTHO05D004421 4.6e-55 218.0 142 69.7
Lalb_Chr09g0320331 Lupinus albus HOM05D003749 ORTHO05D004421 6.1e-55 217.6 141 72.3
Sc10g0001340 Simmondsia chinensis HOM05D003749 ORTHO05D004421 7.9e-55 217.2 142 69.0
Nn4g23700 Nelumbo nucifera HOM05D003749 ORTHO05D004421 1.3e-54 216.5 140 70.0
Ca_24455_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 2.3e-54 215.7 141 71.6
MBI16_g33829_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 3.0e-54 215.3 138 70.3
Ca_04934_v3 Cicer arietinum L. HOM05D003749 ORTHO05D004421 3.9e-54 214.9 141 70.9
Ciclev10013059m.g Citrus clementina HOM05D003749 ORTHO05D004421 5.1e-54 214.5 142 66.9
FAN14G1502 Fragaria x ananassa HOM05D003749 ORTHO05D004421 5.1e-54 214.5 140 67.1
EL10Ac5g11727 Beta vulgaris HOM05D003749 ORTHO05D004421 8.7e-54 213.8 141 68.8
TWI38G0650 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 8.7e-54 213.8 142 69.7
Ah.02g115680 Amaranthus hybridus HOM05D003749 ORTHO05D004421 1.1e-53 213.4 139 70.5
FAN02G1560 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.1e-53 213.4 140 67.1
FAN05G0572 Fragaria x ananassa HOM05D003749 ORTHO05D004421 1.1e-53 213.4 140 67.1
HanXRQChr14g0448851 Helianthus annuus HOM05D003749 ORTHO05D004421 1.1e-53 213.4 142 69.0
MBI10_g08551_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.5e-53 213.0 141 68.1
MBI16_g46925_MAGBIO Magnolia biondii HOM05D003749 ORTHO05D004421 1.5e-53 213.0 135 71.1
TWI39G0894 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 2.5e-53 212.2 142 69.0
COL.COLO4_16198 Corchorus olitorius HOM05D003749 ORTHO05D004421 7.4e-53 210.7 142 70.4
MSTRG.3390 Avicennia marina HOM05D003749 ORTHO05D004421 9.7e-53 210.3 142 70.4
Migut.H00529 Erythranthe guttata HOM05D003749 ORTHO05D004421 9.7e-53 210.3 142 69.0
AUR62040335 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.3e-52 209.9 141 68.8
FvH4_6g45420 Fragaria vesca HOM05D003749 ORTHO05D004421 1.3e-52 209.9 137 67.2
AUR62042069 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.6e-52 209.5 141 68.8
AUR62044332 Chenopodium quinoa HOM05D003749 ORTHO05D004421 1.6e-52 209.5 141 68.8
RcHm_v2.0_Chr2g0163251 Rosa chinensis HOM05D003749 ORTHO05D004421 3.7e-52 208.4 140 65.7
Nitab4.5_0002108g0070 Nicotiana tabacum HOM05D003749 ORTHO05D004421 6.3e-52 207.6 170 60.0
unitig_748.g8406 Utricularia gibba HOM05D003749 ORTHO05D004421 6.3e-52 207.6 142 69.7
SalBow1G5732 Salvia bowleyana HOM05D003749 ORTHO05D004421 8.2e-52 207.2 142 68.3
Haze_14116 Corylus avellana HOM05D003749 ORTHO05D004421 1.1e-51 206.8 193 56.0
Haze_14122 Corylus avellana HOM05D003749 ORTHO05D004421 1.1e-51 206.8 193 56.0
Lj3g0004703 Lotus japonicus HOM05D003749 ORTHO05D004421 1.8e-51 206.1 141 68.8
Glyma.11G093000 Glycine max HOM05D003749 ORTHO05D004421 2.4e-51 205.7 140 67.9
unitig_32.g10762 Utricularia gibba HOM05D003749 ORTHO05D004421 2.4e-51 205.7 142 69.7
Migut.K00859 Erythranthe guttata HOM05D003749 ORTHO05D004421 3.1e-51 205.3 142 67.6
Rhsim10G0064100 Rhododendron simsii HOM05D003749 ORTHO05D004421 6.9e-51 204.1 158 60.8
ECA238G2303 Erigeron canadensis HOM05D003749 ORTHO05D004421 9.1e-51 203.8 138 67.4
Glyma.12G019300 Glycine max HOM05D003749 ORTHO05D004421 9.1e-51 203.8 140 67.1
SalBow6G0369 Salvia bowleyana HOM05D003749 ORTHO05D004421 2.6e-50 202.2 142 66.9
HanXRQChr12g0385611 Helianthus annuus HOM05D003749 ORTHO05D004421 3.4e-50 201.8 143 66.4
TPR.G29477 Trifolium pratense HOM05D003749 ORTHO05D004421 4.5e-50 201.4 141 66.0
Lalb_Chr19g0139861 Lupinus albus HOM05D003749 ORTHO05D004421 5.9e-50 201.1 141 67.4
Lsat_1_v5_gn_2_90800 Lactuca sativa HOM05D003749 ORTHO05D004421 7.7e-50 200.7 138 65.9
Medtr4g077240 Medicago truncatula HOM05D003749 ORTHO05D004421 7.7e-50 200.7 141 67.4
Phvul.011G021700 Phaseolus vulgaris HOM05D003749 ORTHO05D004421 3.8e-49 198.4 140 66.4
PSO063G3423 Papaver somniferum HOM05D003749 ORTHO05D004421 5.0e-49 198.0 142 66.2
VMungo1127G1849 Vigna mungo HOM05D003749 ORTHO05D004421 8.5e-49 197.2 137 65.7
SGA_v2.0_scaffold62G21545 Striga asiatica HOM05D003749 ORTHO05D004421 4.2e-48 194.9 157 61.8
PSO782G4209 Papaver somniferum HOM05D003749 ORTHO05D004421 7.2e-48 194.1 142 65.5
Aqoxy3G03894 Aquilegia oxysepala HOM05D003749 ORTHO05D004421 2.1e-47 192.6 143 66.4
Atru.chr2.1922 Acer truncatum HOM05D003749 ORTHO05D004421 7.9e-47 190.7 117 75.2
SEGI_14095 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 7.9e-47 190.7 140 62.9
Potri.017G111900 Populus trichocarpa HOM05D003749 ORTHO05D004421 1.0e-46 190.3 142 66.2
ATR0053G008 Amborella trichopoda HOM05D003749 ORTHO05D004421 2.3e-46 189.1 137 67.2
Cc07_g05070 Coffea canephora HOM05D003749 ORTHO05D004421 5.1e-46 188.0 140 63.6
Potri.006G249600 Populus trichocarpa HOM05D003749 ORTHO05D004421 2.0e-45 186.0 142 64.1
TWI38G0800 Tripterygium wilfordii HOM05D003749 ORTHO05D004421 4.4e-45 184.9 142 62.7
SEGI_36613 Sequoiadendron giganteum HOM05D003749 ORTHO05D004421 7.4e-45 184.1 135 63.0
Psat7g171120 Pisum sativum HOM05D003749 ORTHO05D004421 1.4e-43 179.9 143 62.9
HPP92_000270 Vanilla planifolia HOM05D003749 ORTHO05D004421 4.1e-43 178.3 138 60.9
Nitab4.5_0004487g0040 Nicotiana tabacum HOM05D003749 ORTHO05D004421 1.3e-41 173.3 175 50.9
Dinv34854 Davidia involucrata HOM05D003749 ORTHO05D004421 2.3e-38 162.5 108 69.4
Medtr5g008020 Medicago truncatula HOM05D003749 ORTHO05D004421 6.7e-38 161.0 141 56.0
AagrBONN_evm.TU.Sc2ySwM_344.3948 Anthoceros agrestis HOM05D003749 ORTHO05D004421 2.0e-37 159.5 140 51.4
Pp3c23_15440 Physcomitrium patens HOM05D003749 ORTHO05D004421 7.4e-37 157.5 137 54.7
Pp3c20_8310 Physcomitrium patens HOM05D003749 ORTHO05D004421 1.7e-36 156.4 137 54.0
CSS0049372 Camellia sinensis var. sinensis HOM05D003749 ORTHO05D004421 3.7e-36 155.2 139 55.4
Mapoly0073s0035 Marchantia polymorpha HOM05D003749 ORTHO05D004421 8.2e-36 154.1 142 53.5
Zm00001eb258090 Zea mays HOM05D003749 ORTHO05D004421 2.0e-34 149.4 126 57.1
vmacro05576 Vaccinium macrocarpon HOM05D003749 ORTHO05D004421 3.5e-34 148.7 285 33.3
Os02g0800100 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 5.9e-34 147.9 141 52.5
CBR_g34012 Chara braunii HOM05D003749 ORTHO05D004421 2.9e-33 145.6 125 56.0
Os03g0583700 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 4.7e-31 138.3 129 51.2
Os09g0314900 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 6.1e-31 137.9 129 51.2
SMO119G0338 Selaginella moellendorffii HOM05D003749 ORTHO05D004421 1.6e-26 123.2 127 46.5
Oeu027946.1 Olea europaea HOM05D003749 ORTHO05D004421 2.9e-25 119.0 80 68.8
Oeu049326.1 Olea europaea HOM05D003749 ORTHO05D004421 1.1e-24 117.1 80 68.8
BcaC02g12028 Brassica carinata HOM05D003749 ORTHO05D004421 8.0e-23 110.9 115 53.9
ATR0693G122 Amborella trichopoda HOM05D003749 ORTHO05D004421 1.4e-22 110.2 73 67.1
MCO04G514 Micromonas commoda HOM05D003749 ORTHO05D004421 1.3e-20 103.6 121 44.6
Os02g0800500 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.4e-19 100.1 109 47.7
Os02g0801200 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.4e-19 100.1 109 47.7
Os02g0801300 Oryza sativa ssp. japonica HOM05D003749 ORTHO05D004421 1.4e-19 100.1 109 47.7
CAN.G512.5 Capsicum annuum HOM05D003749 ORTHO05D004421 3.1e-19 99.0 67 65.7
Cre16.g665000 Chlamydomonas reinhardtii HOM05D003749 ORTHO05D004421 7.0e-19 97.8 117 42.7
C04p08860 Brassica napus HOM05D003749 ORTHO05D004421 2.7e-18 95.9 112 50.9
SalBow1G0221 Salvia bowleyana HOM05D003749 ORTHO05D004421 2.7e-18 95.9 77 61.0
DCAR_007518 Daucus carota HOM05D003749 ORTHO05D004421 1.0e-17 94.0 67 65.7
unitig_748.g8606 Utricularia gibba HOM05D000345 ORTHO05D000215 1.3e-17 93.6 87 54.0
MSTRG.15417 Avicennia marina HOM05D003749 ORTHO05D004421 3.3e-16 89.0 77 54.5
Sabra11G0068300 Salix brachista HOM05D000487 ORTHO05D004421 4.2e-16 88.6 59 66.1
Sabra16G0120200 Salix brachista HOM05D000487 ORTHO05D004421 4.2e-16 88.6 59 66.1
BolC1t05893H Brassica oleracea HOM05D003749 ORTHO05D016434 2.8e-15 85.9 115 47.8
MD05G1212600 Malus domestica HOM05D003749 ORTHO05D004421 8.9e-14 80.9 68 54.4
MD01G1088800 Malus domestica HOM05D003749 ORTHO05D004421 2.0e-13 79.7 68 54.4
Gorai.001G209900 Gossypium raimondii HOM05D003749 ORTHO05D004408 1.3e-09 67.0 43 69.8
Gorai.009G403900 Gossypium raimondii HOM05D003749 ORTHO05D004421 2.3e-09 66.2 42 69.0
Gohir.D08G115050 Gossypium hirsutum HOM05D003749 ORTHO05D004421 6.6e-09 64.7 38 76.3
PRCOL_00003426 Prasinoderma coloniale HOM05D003749 ORTHO05D004421 8.6e-09 64.3 110 33.6
BcaC06g35350 Brassica carinata HOM05D000085 ORTHO05D003318 1.1e-08 63.9 32 90.6
Oeu049327.1 Olea europaea HOM05D003749 ORTHO05D004421 1.1e-08 63.9 39 64.1
AT1G62920 Arabidopsis thaliana HOM05D003749 ORTHO05D081476 4.3e-08 62.0 71 50.7
Gorai.003G095200 Gossypium raimondii HOM05D003749 ORTHO05D004421 3.6e-07 58.9 34 70.6
Gohir.D08G113616 Gossypium hirsutum HOM05D003749 ORTHO05D004421 6.1e-07 58.2 36 69.4
Gohir.D12G069201 Gossypium hirsutum HOM05D000140 ORTHO05D008077 2.3e-06 56.2 34 70.6
Gorai.008G075700 Gossypium raimondii HOM05D000140 ORTHO05D008077 5.2e-06 55.1 34 67.6


User provided reference genes

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