Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s3375 Capsella rubella HOM05D003814 ORTHO05D004399 2.2e-215 751.9 357 100.0
CARHR272950 Cardamine hirsuta HOM05D003814 ORTHO05D004399 2.6e-139 499.2 367 64.6
Thhalv10028265m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 5.3e-116 421.8 371 57.7
A04p14880 Brassica napus HOM05D003814 ORTHO05D004399 5.0e-114 415.2 371 56.6
BraA04t17126Z Brassica rapa HOM05D003814 ORTHO05D004399 5.0e-114 415.2 371 56.6
Carub.0007s3374 Capsella rubella HOM05D003814 ORTHO05D004399 1.6e-112 410.2 372 55.9
Sp1g34730 Schrenkiella parvula HOM05D003814 ORTHO05D004399 7.2e-105 384.8 371 56.6
Sp1g34780 Schrenkiella parvula HOM05D003814 ORTHO05D004399 7.2e-97 358.2 344 55.5
SpUn1086_0010 Schrenkiella parvula HOM05D003814 ORTHO05D004399 2.8e-88 329.7 308 56.2
BraA09t37130Z Brassica rapa HOM05D003814 ORTHO05D004399 9.2e-84 314.7 371 47.4
A09p14840 Brassica napus HOM05D003814 ORTHO05D004399 4.5e-83 312.4 371 47.2
BcaC04g22552 Brassica carinata HOM05D003814 ORTHO05D004399 2.5e-81 306.6 372 46.5
BolC9t54693H Brassica oleracea HOM05D003814 ORTHO05D004399 2.5e-81 306.6 372 46.5
AL2G10680 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 2.8e-80 303.1 366 46.2
BcaB07g31449 Brassica carinata HOM05D003814 ORTHO05D004399 3.6e-80 302.8 370 45.9
C09p17970 Brassica napus HOM05D003814 ORTHO05D004399 3.6e-80 302.8 372 46.2
Thhalv10029417m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 1.0e-79 301.2 358 47.2
Thhalv10028201m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 2.0e-78 297.0 309 52.4
C04p48950 Brassica napus HOM05D003814 ORTHO05D004399 1.2e-75 287.7 372 44.4
BolC4t26476H Brassica oleracea HOM05D003814 ORTHO05D004399 1.2e-75 287.7 372 44.4
CARHR290110 Cardamine hirsuta HOM05D003814 ORTHO05D004399 1.2e-75 287.7 380 41.8
AL2G10650 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 3.0e-74 283.1 368 42.7
Aa31LG2G1300 Aethionema arabicum HOM05D003814 ORTHO05D004399 2.5e-73 280.0 365 43.8
Carub.0002s0052 Capsella rubella HOM05D003814 ORTHO05D004399 1.6e-72 277.3 370 43.8
AT1G64295 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 2.1e-72 276.9 368 43.5
Carub.0007s3376 Capsella rubella HOM05D003814 ORTHO05D004399 3.1e-71 273.1 371 41.0
AT1G64290 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 4.0e-71 272.7 375 43.7
BcaB07g31514 Brassica carinata HOM05D003814 ORTHO05D004399 5.2e-71 272.3 371 41.8
BcaC04g22634 Brassica carinata HOM05D003814 ORTHO05D004399 4.9e-69 265.8 356 43.3
Thhalv10023822m.g Eutrema salsugineum HOM05D003814 ORTHO05D004399 3.2e-68 263.1 368 42.1
Sp1g34880 Schrenkiella parvula HOM05D003814 ORTHO05D004399 1.0e-66 258.1 368 42.4
Sp7g03960 Schrenkiella parvula HOM05D003814 ORTHO05D004399 1.7e-66 257.3 370 40.8
BcaB06g27653 Brassica carinata HOM05D003814 ORTHO05D004399 6.6e-66 255.4 369 41.7
CARHR050300 Cardamine hirsuta HOM05D003814 ORTHO05D004399 2.5e-65 253.4 347 43.8
Carub.0002s0053 Capsella rubella HOM05D003814 ORTHO05D004399 5.6e-65 252.3 373 41.3
BraA09t37073Z Brassica rapa HOM05D003814 ORTHO05D004399 2.8e-64 250.0 319 44.8
A02p10510 Brassica napus HOM05D003814 ORTHO05D004399 4.6e-59 232.6 367 37.1
AT5G41720 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 3.6e-56 223.0 192 60.9
AL7G47620 Arabidopsis lyrata HOM05D003814 ORTHO05D004399 4.0e-55 219.5 185 60.5
C02p17570 Brassica napus HOM05D003814 ORTHO05D004399 3.2e-52 209.9 338 36.4
Potri.008G038000 Populus trichocarpa HOM05D003814 ORTHO05D004399 3.1e-47 193.4 367 35.4
Potri.010G224400 Populus trichocarpa HOM05D003814 ORTHO05D004399 3.8e-45 186.4 337 37.1
TWI53G0525 Tripterygium wilfordii HOM05D003814 ORTHO05D004399 2.7e-43 180.3 353 30.9
C09p17160 Brassica napus HOM05D002195 ORTHO05D002898 1.1e-41 174.9 338 34.3
BolC9t54614H Brassica oleracea HOM05D002195 ORTHO05D002898 1.1e-41 174.9 338 34.3
A09p14250 Brassica napus HOM05D002195 ORTHO05D002898 4.3e-41 172.9 351 33.6
Cfa001318 Carpinus fangiana HOM05D003814 ORTHO05D004399 7.3e-41 172.2 370 32.4
Haze_11118 Corylus avellana HOM05D003814 ORTHO05D004399 4.5e-38 162.9 357 31.9
Ciclev10007128m.g Citrus clementina HOM05D003814 ORTHO05D004399 2.2e-37 160.6 312 34.9
Nitab4.5_0000073g0260 Nicotiana tabacum HOM05D003814 ORTHO05D004399 4.9e-37 159.5 377 29.7
Thecc.09G080800 Theobroma cacao HOM05D003814 ORTHO05D004399 8.4e-37 158.7 307 34.5
AT2G05360 Arabidopsis thaliana HOM05D003814 ORTHO05D004399 3.2e-36 156.8 302 35.1
CiPaw.01G298600 Carya illinoinensis HOM05D003814 ORTHO05D004399 5.4e-36 156.0 374 31.3
FvH4_1g08170 Fragaria vesca HOM05D003814 ORTHO05D004399 1.6e-35 154.5 372 31.2
FAN19G0873 Fragaria x ananassa HOM05D003814 ORTHO05D004399 1.6e-35 154.5 372 31.2
Duzib187G0024 Durio zibethinus HOM05D003814 ORTHO05D004399 3.5e-35 153.3 350 32.9
Duzib168G0557 Durio zibethinus HOM05D003814 ORTHO05D004399 7.9e-35 152.1 371 29.4
Manes.04G143500 Manihot esculenta HOM05D003814 ORTHO05D004399 7.9e-35 152.1 364 29.1
Haze_08071 Corylus avellana HOM05D003814 ORTHO05D004399 1.0e-34 151.8 306 31.7
Sabra10G0173600 Salix brachista HOM05D001546 ORTHO05D004399 1.3e-34 151.4 265 37.4
RcHm_v2.0_Chr2g0094241 Rosa chinensis HOM05D003814 ORTHO05D004399 2.3e-34 150.6 349 30.7
FAN26G3410 Fragaria x ananassa HOM05D003814 ORTHO05D004399 6.7e-34 149.1 372 30.1
FAN26G2103 Fragaria x ananassa HOM05D003814 ORTHO05D004399 1.9e-33 147.5 372 29.8
PGR004G0767 Punica granatum HOM05D003814 ORTHO05D004399 3.3e-33 146.7 317 33.4
QL05p073999 Quercus lobata HOM05D003814 ORTHO05D004399 3.3e-33 146.7 374 28.6
Potri.007G037500 Populus trichocarpa HOM05D003814 ORTHO05D004399 5.6e-33 146.0 316 33.2
Potri.014G187100 Populus trichocarpa HOM05D003814 ORTHO05D004399 2.8e-32 143.7 317 32.8
Sabra16G0039400 Salix brachista HOM05D003814 ORTHO05D004399 3.7e-32 143.3 268 36.6
Peaxi162Scf00928g00024 Petunia axillaris HOM05D003814 ORTHO05D004399 4.8e-32 142.9 359 30.1
DCAR_028786 Daucus carota HOM05D003814 ORTHO05D004399 8.1e-32 142.1 334 30.2
Potri.001G462650 Populus trichocarpa HOM05D003814 ORTHO05D004399 8.1e-32 142.1 269 36.1
FAN23G2856 Fragaria x ananassa HOM05D003814 ORTHO05D004399 1.1e-31 141.7 324 31.5
Potri.017G066400 Populus trichocarpa HOM05D003814 ORTHO05D004399 3.1e-31 140.2 314 32.5
TAR624G1373 Trochodendron aralioides HOM05D003814 ORTHO05D004399 6.9e-31 139.0 330 30.3
Potri.008G214000 Populus trichocarpa HOM05D003814 ORTHO05D004399 2.0e-30 137.5 314 32.2
Haze_11116 Corylus avellana HOM05D003054 ORTHO05D003376 2.6e-30 137.1 302 30.8
Thecc.06G118300 Theobroma cacao HOM05D003814 ORTHO05D004399 3.4e-30 136.7 359 28.7
TAR178G0001 Trochodendron aralioides HOM05D003814 ORTHO05D004399 3.4e-30 136.7 330 30.0
Dinv25578 Davidia involucrata HOM05D003814 ORTHO05D004399 4.5e-30 136.3 329 28.9
Cc08_g07160 Coffea canephora HOM05D003814 ORTHO05D004399 1.7e-29 134.4 330 29.1
MD15G1214200 Malus domestica HOM05D003814 ORTHO05D004399 2.9e-29 133.7 367 27.8
Prupe.7G202800 Prunus persica HOM05D003814 ORTHO05D004399 1.1e-28 131.7 337 29.1
Hma1.2p1_0169F.1_g074710 Hydrangea macrophylla HOM05D003814 ORTHO05D004399 1.9e-28 131.0 328 28.0
TAR636G0432 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.2e-27 128.3 330 29.1
TAR626G0622 Trochodendron aralioides HOM05D003814 ORTHO05D004399 2.1e-27 127.5 296 30.4
TAR374G0716 Trochodendron aralioides HOM05D003814 ORTHO05D004399 3.5e-27 126.7 296 30.1
Migut.E01439 Erythranthe guttata HOM05D003814 ORTHO05D004399 7.9e-27 125.6 406 26.1
Gohir.D04G023700 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.0e-26 125.2 330 26.7
FAN28G0169 Fragaria x ananassa HOM05D003814 ORTHO05D004399 1.8e-26 124.4 266 32.7
ClCG10G017770 Citrullus lanatus HOM05D003814 ORTHO05D004399 3.9e-26 123.2 371 28.8
Gorai.012G033100 Gossypium raimondii HOM05D003814 ORTHO05D004399 3.9e-26 123.2 328 26.5
Potri.006G167500 Populus trichocarpa HOM05D003814 ORTHO05D004399 3.9e-26 123.2 286 33.2
QL03p008482 Quercus lobata HOM05D003814 ORTHO05D004399 8.7e-26 122.1 275 31.6
Gohir.D04G029200 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.5e-25 121.3 328 26.2
PSO170G5919 Papaver somniferum HOM05D003814 ORTHO05D004399 1.9e-25 120.9 303 28.1
FvH4_1g08161 Fragaria vesca HOM05D003814 ORTHO05D004399 5.6e-25 119.4 203 36.5
MELO3C009576.2 Cucumis melo HOM05D003814 ORTHO05D004399 7.4e-25 119.0 367 26.4
Gohir.A02G162300 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.3e-24 118.2 379 26.4
Gohir.D04G024036 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.6e-24 117.9 331 26.0
Prupe.7G202900 Prunus persica HOM05D003814 ORTHO05D004399 1.6e-24 117.9 338 27.5
HanXRQChr04g0126191 Helianthus annuus HOM05D003814 ORTHO05D004399 6.2e-24 115.9 343 28.6
Gohir.A05G386550 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.4e-23 114.8 337 26.4
COL.COLO4_18129 Corchorus olitorius HOM05D003814 ORTHO05D004399 4.0e-23 113.2 325 29.2
SHI03045 Sapria himalayana HOM05D003814 ORTHO05D004399 5.3e-23 112.8 333 29.4
SHI03051 Sapria himalayana HOM05D003814 ORTHO05D004399 5.3e-23 112.8 333 29.4
Sed0024854 Sechium edule HOM05D003814 ORTHO05D004399 5.3e-23 112.8 370 26.5
Gorai.003G018500 Gossypium raimondii HOM05D003814 ORTHO05D004399 1.2e-22 111.7 311 28.0
ClCG10G017950 Citrullus lanatus HOM05D003814 ORTHO05D004399 1.5e-22 111.3 313 27.2
Gohir.D03G018133 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.5e-22 111.3 311 28.0
Gohir.D07G013832 Gossypium hirsutum HOM05D003814 ORTHO05D004399 2.0e-22 110.9 320 27.8
Lsat_1_v5_gn_6_92600 Lactuca sativa HOM05D003814 ORTHO05D004399 2.6e-22 110.5 291 29.6
Aqoxy5G02065 Aquilegia oxysepala HOM05D003814 ORTHO05D004399 3.4e-22 110.2 326 27.0
PSO832G3562 Papaver somniferum HOM05D003814 ORTHO05D004399 3.4e-22 110.2 358 25.7
TAR624G1176 Trochodendron aralioides HOM05D003814 ORTHO05D004399 3.4e-22 110.2 178 34.8
Gohir.A07G014200 Gossypium hirsutum HOM05D003814 ORTHO05D004399 4.5e-22 109.8 327 27.5
FAN26G3081 Fragaria x ananassa HOM05D003814 ORTHO05D004399 5.8e-22 109.4 321 27.7
MD02G1086300 Malus domestica HOM05D003814 ORTHO05D004399 5.8e-22 109.4 338 29.9
HanXRQChr11g0341161 Helianthus annuus HOM05D003814 ORTHO05D004399 7.6e-22 109.0 279 28.7
PSO478G3480 Papaver somniferum HOM05D003814 ORTHO05D004399 1.0e-21 108.6 290 29.0
Gohir.A07G014250 Gossypium hirsutum HOM05D003814 ORTHO05D004399 1.7e-21 107.8 327 27.5
Gorai.001G014600 Gossypium raimondii HOM05D003814 ORTHO05D004399 2.9e-21 107.1 320 26.9
SGA_v2.0_scaffold4G02155 Striga asiatica HOM05D003814 ORTHO05D004399 2.9e-21 107.1 369 26.6
HanXRQChr04g0107941 Helianthus annuus HOM05D003814 ORTHO05D004399 3.8e-21 106.7 295 30.8
PSO782G3287 Papaver somniferum HOM05D003814 ORTHO05D004399 3.8e-21 106.7 215 31.6
PGSC0003DMG400037022 Solanum tuberosum HOM05D003814 ORTHO05D004399 3.8e-21 106.7 263 29.3
PGR004G1882 Punica granatum HOM05D003814 ORTHO05D004399 4.9e-21 106.3 281 32.7
FAN28G0704 Fragaria x ananassa HOM05D003814 ORTHO05D004399 3.2e-20 103.6 188 34.6
PGSC0003DMG400041501 Solanum tuberosum HOM05D003814 ORTHO05D004399 3.2e-20 103.6 345 25.2
HanXRQChr04g0126041 Helianthus annuus HOM05D003814 ORTHO05D004399 4.2e-20 103.2 337 26.1
FAN23G1165 Fragaria x ananassa HOM05D003814 ORTHO05D004399 7.1e-20 102.4 188 35.6
Zm00001eb202740 Zea mays HOM05D003814 ORTHO05D004399 1.2e-19 101.7 251 28.3
Lsat_1_v5_gn_8_86340 Lactuca sativa HOM05D003814 ORTHO05D004399 2.7e-19 100.5 291 29.9
PSO782G0050 Papaver somniferum HOM05D003814 ORTHO05D004399 2.7e-19 100.5 367 26.2
Lsat_1_v5_gn_1_71940 Lactuca sativa HOM05D003814 ORTHO05D004399 4.6e-19 99.8 372 26.3
PSO832G2394 Papaver somniferum HOM05D003814 ORTHO05D004399 6.0e-19 99.4 368 25.8
PSO170G6690 Papaver somniferum HOM05D003814 ORTHO05D004399 7.9e-19 99.0 283 29.0
CsaV3_3G038340 Cucumis sativus L. HOM05D003814 ORTHO05D004399 1.3e-18 98.2 374 25.9
Nitab4.5_0000343g0080 Nicotiana tabacum HOM05D003814 ORTHO05D004399 8.7e-18 95.5 271 29.9
unitig_22.g5418 Utricularia gibba HOM05D003814 ORTHO05D004399 1.5e-17 94.7 229 31.4
Haze_11119 Corylus avellana HOM05D003814 ORTHO05D004399 4.3e-17 93.2 193 32.6
FAN26G2210 Fragaria x ananassa HOM05D003814 ORTHO05D004399 5.7e-17 92.8 232 28.9
PSO017G6459 Papaver somniferum HOM05D003814 ORTHO05D004399 7.4e-17 92.4 289 28.7
Migut.E01447 Erythranthe guttata HOM05D003814 ORTHO05D004399 1.6e-16 91.3 190 30.5
PSO478G4598 Papaver somniferum HOM05D003814 ORTHO05D004399 1.6e-16 91.3 289 29.1
CiPaw.04G145600 Carya illinoinensis HOM05D003814 ORTHO05D004399 2.2e-16 90.9 158 36.1
PSO210G1123 Papaver somniferum HOM05D003814 ORTHO05D004399 3.7e-16 90.1 282 26.2
CAN.G625.43 Capsicum annuum HOM05D003814 ORTHO05D004399 1.1e-15 88.6 376 26.1
ATR0693G387 Amborella trichopoda HOM05D007162 ORTHO05D007631 2.4e-15 87.4 367 23.2
HanXRQChr04g0110661 Helianthus annuus HOM05D003814 ORTHO05D004399 2.4e-15 87.4 197 29.9
TAR636G1188 Trochodendron aralioides HOM05D003814 ORTHO05D004399 3.1e-15 87.0 209 30.1
unitig_22.g5424 Utricularia gibba HOM05D003814 ORTHO05D004399 5.3e-15 86.3 282 27.0
PGSC0003DMG400046351 Solanum tuberosum HOM05D003814 ORTHO05D004399 6.9e-15 85.9 266 27.1
ECA236G4439 Erigeron canadensis HOM05D003814 ORTHO05D004399 1.5e-14 84.7 242 26.9
Peaxi162Scf00047g10141 Petunia axillaris HOM05D003814 ORTHO05D004399 7.6e-14 82.4 257 27.2
ECA236G4104 Erigeron canadensis HOM05D003814 ORTHO05D004399 1.0e-13 82.0 278 28.1
Haze_27585 Corylus avellana HOM05D003814 ORTHO05D004399 1.3e-13 81.6 192 30.7
Peaxi162Scf00067g00233 Petunia axillaris HOM05D003814 ORTHO05D004399 5.0e-13 79.7 238 28.2
Rhsim01G0013700 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.2e-12 77.0 331 26.3
TAR636G1700 Trochodendron aralioides HOM05D003814 ORTHO05D004399 4.2e-12 76.6 186 30.6
PGSC0003DMG400035508 Solanum tuberosum HOM05D003814 ORTHO05D004399 9.3e-12 75.5 138 31.9
MD15G1214100 Malus domestica HOM05D003814 ORTHO05D004399 1.0e-10 72.0 155 29.7
Lsat_1_v5_gn_8_83741 Lactuca sativa HOM05D003814 ORTHO05D004399 5.1e-10 69.7 266 24.4
Lsat_1_v5_gn_8_99821 Lactuca sativa HOM05D002339 ORTHO05D004399 8.8e-10 68.9 266 22.2
RcHm_v2.0_Chr1g0317281 Rosa chinensis HOM05D000007 ORTHO05D000039 1.1e-09 68.6 251 24.7
PSO801G0304 Papaver somniferum HOM05D003814 ORTHO05D004399 5.7e-09 66.2 177 32.2
Rhsim07G0025700 Rhododendron simsii HOM05D000664 ORTHO05D000491 7.4e-09 65.9 305 25.2
CSS0028398 Camellia sinensis var. sinensis HOM05D002420 ORTHO05D002422 9.7e-09 65.5 297 21.9
CSS0031967 Camellia sinensis var. sinensis HOM05D002420 ORTHO05D002422 9.7e-09 65.5 297 21.9
Rhsim01G0013300 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.7e-08 63.5 243 25.5
Rhsim01G0013400 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.7e-08 63.5 229 25.8
Rhsim04G0064500 Rhododendron simsii HOM05D000664 ORTHO05D000491 3.7e-08 63.5 230 26.1
Rhsim01G0013600 Rhododendron simsii HOM05D000664 ORTHO05D000491 6.3e-08 62.8 294 25.2
SalBow1G2869 Salvia bowleyana HOM05D001856 ORTHO05D001959 8.2e-08 62.4 194 27.3
TAR624G0077 Trochodendron aralioides HOM05D003814 ORTHO05D004399 1.4e-07 61.6 125 27.2
Lsat_1_v5_gn_2_42360 Lactuca sativa HOM05D003814 ORTHO05D004399 1.8e-07 61.2 171 25.7
Rhsim01G0013500 Rhododendron simsii HOM05D000664 ORTHO05D000491 1.8e-07 61.2 296 22.6
AT5G42430 Arabidopsis thaliana HOM05D000171 ORTHO05D000101 3.1e-07 60.5 307 22.8
MD17G1255300 Malus domestica HOM05D000007 ORTHO05D000039 3.1e-07 60.5 375 22.1
Carub.0006s0059 Capsella rubella HOM05D000171 ORTHO05D000101 4.1e-07 60.1 300 21.7
Rhsim03G0248800 Rhododendron simsii HOM05D000664 ORTHO05D000491 6.9e-07 59.3 287 23.3
Actinidia35149 Actinidia chinensis HOM05D002420 ORTHO05D002422 1.2e-06 58.5 303 22.8
Lsat_1_v5_gn_5_64781 Lactuca sativa HOM05D003814 ORTHO05D004399 1.2e-06 58.5 143 25.9
Lsat_1_v5_gn_7_15380 Lactuca sativa HOM05D003814 ORTHO05D004399 1.2e-06 58.5 173 25.4
MD17G1252300 Malus domestica HOM05D000007 ORTHO05D000039 2.6e-06 57.4 374 22.7
Peaxi162Scf00928g00029 Petunia axillaris HOM05D003814 ORTHO05D004399 2.6e-06 57.4 122 32.0
FAN07G0903 Fragaria x ananassa HOM05D000664 ORTHO05D000491 4.5e-06 56.6 217 21.7
HanXRQChr04g0095821 Helianthus annuus HOM05D000171 ORTHO05D009073 4.5e-06 56.6 324 21.6
FvH4_4g06320 Fragaria vesca HOM05D000664 ORTHO05D000491 5.9e-06 56.2 191 24.1


User provided reference genes

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