Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s3272 Capsella rubella HOM05D009275 ORTHO05D009180 8.3e-107 390.6 226 100.0
AL7G46310 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 6.2e-70 268.1 230 75.7
AT5G37550 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 5.3e-69 265.0 232 71.1
Thhalv10027910m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 4.9e-67 258.5 229 74.7
CARHR215350 Cardamine hirsuta HOM05D009275 ORTHO05D009180 4.6e-65 251.9 227 65.2
C04p44430 Brassica napus HOM05D009275 ORTHO05D009180 1.3e-64 250.4 230 73.9
BolC4t26014H Brassica oleracea HOM05D009275 ORTHO05D009180 1.3e-64 250.4 230 73.9
Sp7g04570 Schrenkiella parvula HOM05D009275 ORTHO05D009180 6.7e-64 248.1 230 73.0
BraA04t16736Z Brassica rapa HOM05D009275 ORTHO05D009180 2.1e-62 243.0 231 73.2
A04p10720 Brassica napus HOM05D009275 ORTHO05D009180 1.8e-61 240.0 233 71.7
BcaC02g09585 Brassica carinata HOM05D009275 ORTHO05D009180 9.3e-58 227.6 179 71.5
BcaB06g27100 Brassica carinata HOM05D009275 ORTHO05D009180 5.7e-55 218.4 179 69.3
Aa31LG9G17500 Aethionema arabicum HOM05D009275 ORTHO05D009180 3.4e-44 182.6 187 56.7
Thhalv10019019m.g Eutrema salsugineum HOM05D009275 ORTHO05D009180 2.5e-42 176.4 263 55.5
CARHR292200 Cardamine hirsuta HOM05D009275 ORTHO05D009180 3.0e-40 169.5 269 44.6
AL2G23880 Arabidopsis lyrata HOM05D009275 ORTHO05D009180 1.1e-39 167.5 271 55.4
Sp5g21250 Schrenkiella parvula HOM05D009275 ORTHO05D009180 1.3e-38 164.1 234 54.7
Carub.0002s1218 Capsella rubella HOM05D009275 ORTHO05D009180 4.5e-36 155.6 241 56.0
AT1G66190 Arabidopsis thaliana HOM05D009275 ORTHO05D009180 1.3e-35 154.1 254 51.6
BcaB05g24157 Brassica carinata HOM05D009275 ORTHO05D009180 1.1e-34 151.0 242 52.9
BcaC03g14735 Brassica carinata HOM05D009275 ORTHO05D009180 2.3e-32 143.3 192 49.5
BraA02t06410Z Brassica rapa HOM05D009275 ORTHO05D009180 2.3e-32 143.3 242 53.7
C02p21840 Brassica napus HOM05D009275 ORTHO05D009180 3.0e-32 142.9 192 49.5
BolC2t08316H Brassica oleracea HOM05D009275 ORTHO05D009180 3.0e-32 142.9 192 49.5
A02p13520 Brassica napus HOM05D009275 ORTHO05D009180 8.8e-32 141.4 241 54.4
Aa31LG2G2900 Aethionema arabicum HOM05D009275 ORTHO05D009180 1.5e-31 140.6 258 42.2
THA.LOC104822277 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 5.3e-29 132.1 212 52.8
THA.LOC104805631 Tarenaya hassleriana HOM05D009275 ORTHO05D009180 1.5e-26 124.0 225 48.4
Duzib268G1603 Durio zibethinus HOM05D008015 ORTHO05D009180 4.7e-17 92.4 172 43.0
MELO3C022825.2 Cucumis melo HOM05D008015 ORTHO05D009180 5.9e-12 75.5 171 38.6
ClCG03G008850 Citrullus lanatus HOM05D008015 ORTHO05D009180 7.7e-12 75.1 160 36.9
Potri.004G085100 Populus trichocarpa HOM05D008015 ORTHO05D009180 7.7e-12 75.1 165 37.6
CsaV3_5G023910 Cucumis sativus L. HOM05D009275 ORTHO05D009180 5.0e-11 72.4 172 37.8
Thecc.04G053900 Theobroma cacao HOM05D008015 ORTHO05D009180 5.0e-11 72.4 170 36.5
Cpa.g.sc340.4 Carica papaya HOM05D008015 ORTHO05D009180 8.5e-11 71.6 186 34.9
Gorai.001G082600 Gossypium raimondii HOM05D008015 ORTHO05D009180 8.5e-11 71.6 164 37.2
Gohir.D07G078200 Gossypium hirsutum HOM05D008015 ORTHO05D009180 1.1e-10 71.2 164 37.2
TAR371G1005 Trochodendron aralioides HOM05D008015 ORTHO05D009180 1.9e-10 70.5 98 49.0
Cc07_g13270 Coffea canephora HOM05D008015 ORTHO05D009180 4.2e-10 69.3 170 37.1
COL.COLO4_13422 Corchorus olitorius HOM05D009275 ORTHO05D009180 4.2e-10 69.3 127 44.1
Medtr3g065210 Medicago truncatula HOM05D008015 ORTHO05D009180 5.5e-10 68.9 159 37.1
Glyma.14G213100 Glycine max HOM05D008015 ORTHO05D009180 9.4e-10 68.2 155 36.8
Cfa007792 Carpinus fangiana HOM05D008015 ORTHO05D009180 1.6e-09 67.4 169 37.9
Psat2g045760 Pisum sativum HOM05D008015 ORTHO05D009180 2.1e-09 67.0 96 42.7
Gohir.A07G073500 Gossypium hirsutum HOM05D008015 ORTHO05D009180 2.7e-09 66.6 162 37.0
Lalb_Chr15g0084981 Lupinus albus HOM05D008015 ORTHO05D009180 2.7e-09 66.6 156 36.5
QL02p059324 Quercus lobata HOM05D008015 ORTHO05D009180 2.7e-09 66.6 174 33.9
Ciclev10012847m.g Citrus clementina HOM05D008015 ORTHO05D009180 4.7e-09 65.9 178 37.1
Manes.02G078100 Manihot esculenta HOM05D008015 ORTHO05D009180 1.0e-08 64.7 162 35.2
Prupe.3G166400 Prunus persica HOM05D008015 ORTHO05D009180 1.0e-08 64.7 94 42.6
TWI77G0273 Tripterygium wilfordii HOM05D008015 ORTHO05D009180 1.0e-08 64.7 89 44.9
Potri.017G131300 Populus trichocarpa HOM05D008015 ORTHO05D009180 1.4e-08 64.3 164 33.5
Sed0025761 Sechium edule HOM05D008015 ORTHO05D009180 1.4e-08 64.3 183 34.4
TAR629G2519 Trochodendron aralioides HOM05D008015 ORTHO05D009180 1.4e-08 64.3 93 47.3
MBI19_g08383_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.8e-08 63.9 157 35.7
DCAR_014163 Daucus carota HOM05D008015 ORTHO05D009180 2.3e-08 63.5 91 45.1
Nn3g18370 Nelumbo nucifera HOM05D008015 ORTHO05D009180 2.3e-08 63.5 165 33.9
Nn4g24386 Nelumbo nucifera HOM05D008015 ORTHO05D009180 2.3e-08 63.5 159 38.4
CiPaw.03G073500 Carya illinoinensis HOM05D008015 ORTHO05D009180 3.0e-08 63.2 100 44.0
Glyma.18G041300 Glycine max HOM05D008015 ORTHO05D009180 4.0e-08 62.8 124 37.1
arahy.Tifrunner.gnm1.ann1.NRE7W4 Arachis hypogaea HOM05D009275 ORTHO05D009180 5.2e-08 62.4 102 42.2
Lalb_Chr17g0346041 Lupinus albus HOM05D008015 ORTHO05D009180 8.8e-08 61.6 93 44.1
Oeu032314.1 Olea europaea HOM05D008015 ORTHO05D009180 8.8e-08 61.6 159 34.6
Aqoxy1G02179 Aquilegia oxysepala HOM05D008015 ORTHO05D009180 1.2e-07 61.2 183 33.9
arahy.Tifrunner.gnm1.ann1.I66ZQ3 Arachis hypogaea HOM05D009275 ORTHO05D009180 1.2e-07 61.2 104 40.4
MD09G1270500 Malus domestica HOM05D008015 ORTHO05D009180 1.5e-07 60.8 94 40.4
CSS0009801 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 2.6e-07 60.1 97 46.4
CSS0018355 Camellia sinensis var. sinensis HOM05D008015 ORTHO05D009180 2.6e-07 60.1 97 46.4
MBI13_g45895_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 2.6e-07 60.1 97 45.4
RcHm_v2.0_Chr3g0491241 Rosa chinensis HOM05D008015 ORTHO05D009180 2.6e-07 60.1 124 38.7
LjContig00141g0001505 Lotus japonicus HOM05D008015 ORTHO05D009180 4.4e-07 59.3 157 33.8
Rhsim10G0178500 Rhododendron simsii HOM05D008015 ORTHO05D009180 4.4e-07 59.3 131 35.1
CDE05G1037 Ceratophyllum demersum HOM05D008015 ORTHO05D009180 5.7e-07 58.9 138 33.3
CANSAT35G1526 Cannabis sativa HOM05D008015 ORTHO05D009180 7.5e-07 58.5 159 30.8
Lalb_Chr18g0053531 Lupinus albus HOM05D008015 ORTHO05D009180 7.5e-07 58.5 179 30.7
PSO478G3758 Papaver somniferum HOM05D008015 ORTHO05D009180 9.8e-07 58.2 96 43.8
CDE05G0668 Ceratophyllum demersum HOM05D006178 ORTHO05D007504 1.3e-06 57.8 160 35.0
MBI13_g14024_MAGBIO Magnolia biondii HOM05D008015 ORTHO05D009180 1.7e-06 57.4 96 42.7
VMungo0647G1978 Vigna mungo HOM05D008015 ORTHO05D009180 1.7e-06 57.4 93 44.1
TPR.G30001 Trifolium pratense HOM05D008015 ORTHO05D009180 2.2e-06 57.0 158 30.4
Lsat_1_v5_gn_8_114880 Lactuca sativa HOM05D008015 ORTHO05D009180 3.7e-06 56.2 92 44.6
FvH4_1g30203 Fragaria vesca HOM05D008015 ORTHO05D009180 4.9e-06 55.8 92 41.3
Medtr5g077940 Medicago truncatula HOM05D008015 ORTHO05D009180 4.9e-06 55.8 96 40.6
MSTRG.3702 Avicennia marina HOM05D008015 ORTHO05D009180 6.3e-06 55.5 93 40.9
FAN23G1273 Fragaria x ananassa HOM05D008015 ORTHO05D009180 6.3e-06 55.5 92 40.2
Actinidia35723 Actinidia chinensis HOM05D008015 ORTHO05D009180 8.3e-06 55.1 93 41.9
SalBow5G5173 Salvia bowleyana HOM05D008015 ORTHO05D009180 8.3e-06 55.1 89 40.4


User provided reference genes

Program Settings