Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s3148 Capsella rubella HOM05D005150 ORTHO05D006070 1.3e-49 199.5 109 100.0
AL7G44580 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 4.2e-40 167.9 109 78.9
A04p09910 Brassica napus HOM05D005150 ORTHO05D006070 1.7e-36 156.0 110 74.5
BraA04t16654Z Brassica rapa HOM05D005150 ORTHO05D006070 1.7e-36 156.0 110 74.5
BolC4t25919H Brassica oleracea HOM05D005150 ORTHO05D006070 4.8e-36 154.5 110 73.6
CARHR216910 Cardamine hirsuta HOM05D005150 ORTHO05D006070 8.2e-36 153.7 109 77.1
BcaC02g09491 Brassica carinata HOM05D005150 ORTHO05D006070 1.1e-35 153.3 110 73.6
C04p43410 Brassica napus HOM05D005150 ORTHO05D006070 4.1e-35 151.4 110 72.7
AT5G35732 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 7.0e-35 150.6 101 74.3
Sp7g06500 Schrenkiella parvula HOM05D005150 ORTHO05D006070 5.0e-33 144.4 109 69.7
Aa31sc697G10 Aethionema arabicum HOM05D005150 ORTHO05D006070 6.1e-31 137.5 109 67.0
BcaB06g26977 Brassica carinata HOM05D025437 ORTHO05D006070 4.1e-27 124.8 108 61.1
AT2G04795 Arabidopsis thaliana HOM05D005150 ORTHO05D006070 9.1e-27 123.6 109 60.6
AL3G42390 Arabidopsis lyrata HOM05D005150 ORTHO05D006070 2.7e-26 122.1 109 59.6
THA.LOC104826613 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 7.7e-26 120.6 110 62.7
BcaB08g34491 Brassica carinata HOM05D005150 ORTHO05D006070 2.9e-25 118.6 109 61.5
Sp3g23410 Schrenkiella parvula HOM05D005150 ORTHO05D006070 2.9e-25 118.6 109 59.6
A03p44460 Brassica napus HOM05D005150 ORTHO05D006070 8.6e-25 117.1 109 60.6
BraA03t13579Z Brassica rapa HOM05D005150 ORTHO05D006070 8.6e-25 117.1 109 60.6
THA.LOC104808855 Tarenaya hassleriana HOM05D005150 ORTHO05D006070 9.5e-24 113.6 110 60.0
CARHR102770 Cardamine hirsuta HOM05D005150 ORTHO05D006070 1.6e-23 112.8 109 56.9
C03p55240 Brassica napus HOM05D005150 ORTHO05D006070 2.1e-23 112.5 109 58.7
BolC3t17797H Brassica oleracea HOM05D005150 ORTHO05D006070 2.1e-23 112.5 109 58.7
BcaC01g06899 Brassica carinata HOM05D005150 ORTHO05D006070 6.1e-23 110.9 109 57.8
Aa31sc53G30 Aethionema arabicum HOM05D005150 ORTHO05D006070 6.8e-22 107.5 112 56.2
ClCG02G002530 Citrullus lanatus HOM05D005150 ORTHO05D006070 8.9e-22 107.1 115 51.3
ClCG02G002570 Citrullus lanatus HOM05D005150 ORTHO05D006070 8.9e-22 107.1 115 51.3
Sed0026674 Sechium edule HOM05D005150 ORTHO05D006070 3.4e-21 105.1 106 53.8
MELO3C018891.2 Cucumis melo HOM05D005150 ORTHO05D006070 4.4e-21 104.8 115 50.4
Sed0012024 Sechium edule HOM05D005150 ORTHO05D006070 5.7e-21 104.4 111 48.6
CsaV3_7G002850 Cucumis sativus L. HOM05D005150 ORTHO05D006070 7.5e-21 104.0 115 49.6
CiPaw.03G276700 Carya illinoinensis HOM05D005150 ORTHO05D006070 1.3e-20 103.2 115 47.8
Thecc.01G187900 Theobroma cacao HOM05D005150 ORTHO05D006070 4.9e-20 101.3 111 45.9
Atru.chr6.3335 Acer truncatum HOM05D005150 ORTHO05D006070 6.3e-20 100.9 123 48.8
Cfa014266 Carpinus fangiana HOM05D005150 ORTHO05D006070 1.4e-19 99.8 109 50.5
Carub.0003s2640 Capsella rubella HOM05D005150 ORTHO05D006070 3.1e-19 98.6 111 54.1
Hma1.2p1_0133F.1_g061080 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 3.1e-19 98.6 113 48.7
Haze_12715 Corylus avellana HOM05D005150 ORTHO05D006070 5.4e-19 97.8 109 48.6
Cpa.g.sc136.7 Carica papaya HOM05D005150 ORTHO05D006070 7.0e-19 97.4 113 48.7
Duzib133G1369 Durio zibethinus HOM05D005150 ORTHO05D006070 7.0e-19 97.4 111 44.1
RcHm_v2.0_Chr2g0156971 Rosa chinensis HOM05D005150 ORTHO05D006070 7.0e-19 97.4 113 46.9
FAN02G0634 Fragaria x ananassa HOM05D005150 ORTHO05D006070 2.0e-18 95.9 116 44.0
FAN05G2177 Fragaria x ananassa HOM05D005150 ORTHO05D006070 2.0e-18 95.9 116 44.0
Gohir.A07G189900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.7e-18 95.5 112 46.4
Gohir.D07G196100 Gossypium hirsutum HOM05D005150 ORTHO05D006070 2.7e-18 95.5 112 46.4
Gorai.001G219600 Gossypium raimondii HOM05D005150 ORTHO05D006070 2.7e-18 95.5 112 46.4
DCAR_012901 Daucus carota HOM05D005150 ORTHO05D006070 1.0e-17 93.6 115 48.7
Nn1g07416 Nelumbo nucifera HOM05D005150 ORTHO05D006070 1.0e-17 93.6 114 46.5
QL08p029214 Quercus lobata HOM05D005150 ORTHO05D006070 1.7e-17 92.8 110 44.5
Rhsim06G0172300 Rhododendron simsii HOM05D005150 ORTHO05D006070 2.9e-17 92.0 115 47.0
Phvul.008G205400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 3.8e-17 91.7 112 46.4
Gohir.A11G150900 Gossypium hirsutum HOM05D005150 ORTHO05D006070 5.0e-17 91.3 111 50.5
vmacro12127 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 5.0e-17 91.3 115 45.2
VMungo0647G0767 Vigna mungo HOM05D005150 ORTHO05D006070 5.0e-17 91.3 112 46.4
Gorai.007G167900 Gossypium raimondii HOM05D005150 ORTHO05D006070 6.6e-17 90.9 111 48.6
Potri.002G222900 Populus trichocarpa HOM05D005150 ORTHO05D006070 6.6e-17 90.9 112 45.5
PGR142G3730 Punica granatum HOM05D005150 ORTHO05D006070 8.6e-17 90.5 111 46.8
Gohir.D11G157400 Gossypium hirsutum HOM05D005150 ORTHO05D006070 1.5e-16 89.7 111 47.7
DCAR_032165 Daucus carota HOM05D005150 ORTHO05D006070 2.5e-16 89.0 111 44.1
HanXRQChr10g0306371 Helianthus annuus HOM05D005150 ORTHO05D006070 2.5e-16 89.0 113 46.9
Sabra14G0124000 Salix brachista HOM05D005150 ORTHO05D006070 2.5e-16 89.0 113 46.9
FvH4_6g41440 Fragaria vesca HOM05D005150 ORTHO05D006070 3.3e-16 88.6 108 41.7
Nn1g03285 Nelumbo nucifera HOM05D005150 ORTHO05D006070 3.3e-16 88.6 115 44.3
CAN.G584.30 Capsicum annuum HOM05D005150 ORTHO05D006070 4.3e-16 88.2 111 42.3
Actinidia21452 Actinidia chinensis HOM05D005150 ORTHO05D006070 5.6e-16 87.8 113 41.6
MD09G1119700 Malus domestica HOM05D005150 ORTHO05D006070 7.3e-16 87.4 126 41.3
Glyma.14G039800 Glycine max HOM05D005150 ORTHO05D006070 1.2e-15 86.7 113 46.0
MD17G1110500 Malus domestica HOM05D005150 ORTHO05D006070 1.2e-15 86.7 126 41.3
Rhsim06G0172200 Rhododendron simsii HOM05D005150 ORTHO05D006070 1.2e-15 86.7 118 44.9
ECA234G4664 Erigeron canadensis HOM05D005150 ORTHO05D006070 1.6e-15 86.3 116 44.0
Gorai.001G194000 Gossypium raimondii HOM05D005150 ORTHO05D006070 3.6e-15 85.1 116 48.3
Lj6g0009976 Lotus japonicus HOM05D005150 ORTHO05D006070 3.6e-15 85.1 111 43.2
Hma1.2p1_0405F.1_g145660 Hydrangea macrophylla HOM05D005150 ORTHO05D006070 4.7e-15 84.7 117 41.9
Aqoxy1G04044 Aquilegia oxysepala HOM05D005150 ORTHO05D006070 1.4e-14 83.2 114 41.2
Phvul.006G020400 Phaseolus vulgaris HOM05D005150 ORTHO05D006070 2.3e-14 82.4 117 41.0
Potri.014G162400 Populus trichocarpa HOM05D005150 ORTHO05D006070 2.3e-14 82.4 115 44.3
Prupe.3G204400 Prunus persica HOM05D005150 ORTHO05D006070 2.3e-14 82.4 119 42.9
Gohir.A07G176012 Gossypium hirsutum HOM05D005150 ORTHO05D006070 4.0e-14 81.6 110 42.7
arahy.Tifrunner.gnm1.ann1.CR4AH5 Arachis hypogaea HOM05D005150 ORTHO05D006070 6.8e-14 80.9 116 42.2
arahy.Tifrunner.gnm1.ann1.V5U7H6 Arachis hypogaea HOM05D005150 ORTHO05D006070 6.8e-14 80.9 116 42.2
Lsat_1_v5_gn_7_95641 Lactuca sativa HOM05D005150 ORTHO05D006070 6.8e-14 80.9 112 42.0
Manes.13G063792 Manihot esculenta HOM05D005150 ORTHO05D006070 6.8e-14 80.9 114 45.6
ECA240G3606 Erigeron canadensis HOM05D005150 ORTHO05D006070 8.9e-14 80.5 116 42.2
Manes.12G062667 Manihot esculenta HOM05D005150 ORTHO05D006070 8.9e-14 80.5 113 43.4
Manes.12G062700 Manihot esculenta HOM05D005150 ORTHO05D006070 8.9e-14 80.5 113 43.4
Medtr7g058970 Medicago truncatula HOM05D005150 ORTHO05D006070 8.9e-14 80.5 118 38.1
Glyma.13G073800 Glycine max HOM05D005150 ORTHO05D006070 1.2e-13 80.1 115 40.9
Lsat_1_v5_gn_9_105581 Lactuca sativa HOM05D005150 ORTHO05D006070 1.2e-13 80.1 111 41.4
LjContig00564g0005952 Lotus japonicus HOM05D005150 ORTHO05D006070 1.5e-13 79.7 113 42.5
Oeu029950.1 Olea europaea HOM05D005150 ORTHO05D006070 1.5e-13 79.7 111 41.4
CSS0010457 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.6e-13 79.0 110 41.8
CSS0040672 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 2.6e-13 79.0 110 41.8
CSS0044074 Camellia sinensis var. sinensis HOM05D005150 ORTHO05D006070 7.5e-13 77.4 107 41.1
Ciclev10017035m.g Citrus clementina HOM05D005150 ORTHO05D006070 7.5e-13 77.4 101 44.6
MELO3C019368.2 Cucumis melo HOM05D005150 ORTHO05D006070 7.5e-13 77.4 120 43.3
Lalb_Chr19g0125521 Lupinus albus HOM05D005150 ORTHO05D006070 9.8e-13 77.0 114 39.5
PSO675G4632 Papaver somniferum HOM05D005150 ORTHO05D006070 9.8e-13 77.0 119 42.0
ClCG02G009450 Citrullus lanatus HOM05D005150 ORTHO05D006070 1.7e-12 76.3 121 43.8
Glyma.02G276100 Glycine max HOM05D005150 ORTHO05D006070 1.7e-12 76.3 113 44.2
Lsat_1_v5_gn_5_124661 Lactuca sativa HOM05D005150 ORTHO05D006070 1.7e-12 76.3 111 39.6
CsaV3_6G009360 Cucumis sativus L. HOM05D005150 ORTHO05D006070 2.9e-12 75.5 120 42.5
PSO541G4821 Papaver somniferum HOM05D005150 ORTHO05D006070 2.9e-12 75.5 119 41.2
Duzib138G1375 Durio zibethinus HOM05D005150 ORTHO05D006070 3.7e-12 75.1 104 37.5
Sopen07g002670 Solanum pennellii HOM05D005150 ORTHO05D006070 3.7e-12 75.1 95 42.1
Solyc07g006590.1 Solanum lycopersicum HOM05D005150 ORTHO05D006070 4.9e-12 74.7 94 41.5
Lj1g0017552 Lotus japonicus HOM05D005150 ORTHO05D006070 6.4e-12 74.3 97 43.3
Oeu040478.2 Olea europaea HOM05D005150 ORTHO05D006070 6.4e-12 74.3 120 44.2
Ah.14g082900 Amaranthus hybridus HOM05D005150 ORTHO05D006070 1.4e-11 73.2 114 37.7
HanXRQChr03g0075721 Helianthus annuus HOM05D005150 ORTHO05D006070 1.4e-11 73.2 114 40.4
Lalb_Chr04g0249481 Lupinus albus HOM05D005150 ORTHO05D006070 1.4e-11 73.2 51 60.8
EL10Ac9g22759 Beta vulgaris HOM05D005150 ORTHO05D006070 3.2e-11 72.0 116 39.7
TPR.G12632 Trifolium pratense HOM05D005150 ORTHO05D006070 3.2e-11 72.0 103 40.8
TPR.G14637 Trifolium pratense HOM05D005150 ORTHO05D006070 3.2e-11 72.0 115 40.0
AUR62005176 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.1e-11 71.6 113 38.9
AUR62017541 Chenopodium quinoa HOM05D005150 ORTHO05D006070 4.1e-11 71.6 116 36.2
COL.COLO4_25851 Corchorus olitorius HOM05D005150 ORTHO05D006070 4.1e-11 71.6 65 50.8
Rhsim04G0044800 Rhododendron simsii HOM05D005150 ORTHO05D006070 4.1e-11 71.6 114 37.7
AUR62015079 Chenopodium quinoa HOM05D005150 ORTHO05D006070 5.4e-11 71.2 116 36.2
TAR629G0945 Trochodendron aralioides HOM05D005150 ORTHO05D006070 7.0e-11 70.9 105 37.1
TAR624G1342 Trochodendron aralioides HOM05D005150 ORTHO05D006070 9.2e-11 70.5 100 37.0
AUR62000791 Chenopodium quinoa HOM05D005150 ORTHO05D006070 1.2e-10 70.1 113 38.1
HanXRQChr17g0535431 Helianthus annuus HOM05D005150 ORTHO05D006070 1.2e-10 70.1 106 41.5
Dinv07836 Davidia involucrata HOM05D005150 ORTHO05D006070 1.6e-10 69.7 104 39.4
Medtr5g088550 Medicago truncatula HOM05D005150 ORTHO05D006070 1.6e-10 69.7 105 41.9
Eucgr.K00667 Eucalyptus grandis HOM05D005150 ORTHO05D006070 2.0e-10 69.3 120 40.8
Oeu012338.1 Olea europaea HOM05D005150 ORTHO05D006070 3.5e-10 68.6 53 62.3
vmacro12128 Vaccinium macrocarpon HOM05D005150 ORTHO05D006070 2.3e-09 65.9 118 36.4
HanXRQChr04g0126761 Helianthus annuus HOM05D005150 ORTHO05D006070 3.9e-09 65.1 103 39.8
Ah.01g002180 Amaranthus hybridus HOM05D005150 ORTHO05D006070 6.6e-09 64.3 107 38.3
Sed0014772 Sechium edule HOM05D005150 ORTHO05D006070 1.9e-08 62.8 102 41.2
Sc06g0009750 Simmondsia chinensis HOM05D005150 ORTHO05D006070 1.9e-08 62.8 112 36.6
DCAR_021114 Daucus carota HOM05D005150 ORTHO05D006070 2.5e-08 62.4 99 41.4
TWI36G0863 Tripterygium wilfordii HOM05D005150 ORTHO05D006070 4.3e-08 61.6 111 35.1
EL10Ac4g09390 Beta vulgaris HOM05D005150 ORTHO05D006070 5.6e-08 61.2 106 36.8
Sc21g0000930 Simmondsia chinensis HOM05D005150 ORTHO05D006070 3.6e-07 58.5 118 33.1
FAN14G4944 Fragaria x ananassa HOM05D008097 ORTHO05D006070 1.1e-06 57.0 49 44.9
Sed0002977 Sechium edule HOM05D005150 ORTHO05D006070 1.1e-06 57.0 113 45.1
ECA236G2208 Erigeron canadensis HOM05D005150 ORTHO05D006070 2.3e-06 55.8 103 35.9
Nitab4.5_0000244g0100 Nicotiana tabacum HOM05D005150 ORTHO05D006070 6.8e-06 54.3 83 34.9
Ah.06g189600 Amaranthus hybridus HOM05D005150 ORTHO05D006070 8.9e-06 53.9 94 37.2


User provided reference genes

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