Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s2207 Capsella rubella HOM05D007523 ORTHO05D009520 2.0e-84 315.8 173 100.0
AT4G19070 Arabidopsis thaliana HOM05D007523 ORTHO05D009520 4.6e-73 278.1 168 90.5
AL7G35030 Arabidopsis lyrata HOM05D007523 ORTHO05D009520 4.3e-71 271.6 165 90.9
CARHR225970 Cardamine hirsuta HOM05D007523 ORTHO05D009520 1.4e-69 266.5 169 89.9
Thhalv10026426m.g Eutrema salsugineum HOM05D007523 ORTHO05D009520 6.0e-65 251.1 163 87.7
BolC7t45523H Brassica oleracea HOM05D007523 ORTHO05D009520 4.8e-62 241.5 166 83.1
C07p50210 Brassica napus HOM05D000137 ORTHO05D002305 5.3e-61 238.0 162 82.1
BcaC06g30615 Brassica carinata HOM05D007523 ORTHO05D009520 5.8e-60 234.6 168 82.1
BraA03t14258Z Brassica rapa HOM05D000452 ORTHO05D000647 1.0e-59 233.8 163 82.8
Sp7g17790 Schrenkiella parvula HOM05D007523 ORTHO05D005023 1.7e-59 233.0 161 83.2
BcaNung03083 Brassica carinata HOM05D007523 ORTHO05D009520 2.9e-59 232.3 161 82.6
A03p51710 Brassica napus HOM05D000137 ORTHO05D002305 6.5e-59 231.1 161 82.6
Aa31LG6G1770 Aethionema arabicum HOM05D007523 ORTHO05D005023 3.5e-57 225.3 164 79.9
THA.LOC104811020 Tarenaya hassleriana HOM05D007523 ORTHO05D009520 1.8e-53 213.0 174 72.4
Dinv28021 Davidia involucrata HOM05D007523 ORTHO05D009520 6.1e-33 144.8 153 64.1
QL12p000900 Quercus lobata HOM05D007523 ORTHO05D009520 1.4e-32 143.7 172 54.7
Manes.17G008000 Manihot esculenta HOM05D007523 ORTHO05D009520 1.8e-32 143.3 176 55.7
Atru.chr6.1496 Acer truncatum HOM05D007523 ORTHO05D009520 8.8e-32 141.0 137 65.7
vmacro00070 Vaccinium macrocarpon HOM05D007523 ORTHO05D009520 3.3e-31 139.0 176 51.7
Haze_08076 Corylus avellana HOM05D007523 ORTHO05D009520 5.7e-31 138.3 167 57.5
Cc08_g04400 Coffea canephora HOM05D007523 ORTHO05D009520 1.3e-30 137.1 176 52.3
PSO675G0851 Papaver somniferum HOM05D007523 ORTHO05D009520 2.2e-30 136.3 176 55.7
TAR629G3055 Trochodendron aralioides HOM05D007523 ORTHO05D009520 2.2e-30 136.3 139 62.6
Ciclev10002679m.g Citrus clementina HOM05D007523 ORTHO05D009520 2.8e-30 136.0 171 53.2
CiPaw.11G102500 Carya illinoinensis HOM05D007523 ORTHO05D009520 4.8e-30 135.2 177 52.5
ClCG07G002350 Citrullus lanatus HOM05D007523 ORTHO05D009520 1.4e-29 133.7 177 54.8
PSO675G0835 Papaver somniferum HOM05D007523 ORTHO05D009520 1.8e-29 133.3 140 63.6
CSS0001694 Camellia sinensis var. sinensis HOM05D007523 ORTHO05D009520 5.3e-29 131.7 172 54.1
GSVIVG01026296001 Vitis vinifera HOM05D007523 ORTHO05D009520 9.1e-29 131.0 175 54.9
CSS0003197 Camellia sinensis var. sinensis HOM05D007523 ORTHO05D009520 1.2e-28 130.6 171 53.8
Thecc.02G365300 Theobroma cacao HOM05D007523 ORTHO05D009520 2.0e-28 129.8 169 55.6
Potri.001G132400 Populus trichocarpa HOM05D007523 ORTHO05D009520 2.6e-28 129.4 176 51.7
CsaV3_3G030330 Cucumis sativus L. HOM05D007523 ORTHO05D009520 1.3e-27 127.1 177 53.1
CANSAT21G1314 Cannabis sativa HOM05D007523 ORTHO05D009520 1.7e-27 126.7 178 52.2
Lj4g0001215 Lotus japonicus HOM05D007523 ORTHO05D009520 2.2e-27 126.3 155 58.1
Sabra01G0102200 Salix brachista HOM05D007523 ORTHO05D009520 2.9e-27 125.9 142 58.5
Sed0002333 Sechium edule HOM05D007523 ORTHO05D009520 5.0e-27 125.2 178 53.9
Aqoxy4G00046 Aquilegia oxysepala HOM05D007523 ORTHO05D009520 8.5e-27 124.4 135 62.2
Oeu017333.1 Olea europaea HOM05D007523 ORTHO05D009520 1.5e-26 123.6 133 63.9
HanXRQChr03g0082201 Helianthus annuus HOM05D007523 ORTHO05D009520 2.5e-26 122.9 122 68.9
Nn1g02124 Nelumbo nucifera HOM05D007523 ORTHO05D009520 4.2e-26 122.1 145 57.9
Medtr8g071180 Medicago truncatula HOM05D007523 ORTHO05D009520 5.5e-26 121.7 175 52.6
Cpa.g.sc355.1 Carica papaya HOM05D007523 ORTHO05D009520 7.2e-26 121.3 110 72.7
Peaxi162Scf00876g00434 Petunia axillaris HOM05D007523 ORTHO05D009520 9.4e-26 120.9 174 51.7
TWI34G1559 Tripterygium wilfordii HOM05D007523 ORTHO05D009520 2.1e-25 119.8 174 50.0
Eucgr.D02602 Eucalyptus grandis HOM05D007523 ORTHO05D009520 4.7e-25 118.6 173 53.8
Gohir.A12G173966 Gossypium hirsutum HOM05D007523 ORTHO05D009520 4.7e-25 118.6 164 51.8
Lalb_Chr16g0392051 Lupinus albus HOM05D007523 ORTHO05D009520 4.7e-25 118.6 123 61.8
Gorai.008G189000 Gossypium raimondii HOM05D007523 ORTHO05D009520 6.1e-25 118.2 164 51.8
Prupe.5G021500 Prunus persica HOM05D007523 ORTHO05D009520 6.1e-25 118.2 142 57.0
Rhsim11G0026000 Rhododendron simsii HOM05D007523 ORTHO05D009520 6.1e-25 118.2 167 50.3
Psat4g110520 Pisum sativum HOM05D007523 ORTHO05D009520 1.0e-24 117.5 152 55.9
Duzib248G0934 Durio zibethinus HOM05D007523 ORTHO05D009520 1.4e-24 117.1 128 62.5
ATR1098G100 Amborella trichopoda HOM05D007523 ORTHO05D009520 1.8e-24 116.7 117 67.5
TPR.G31317 Trifolium pratense HOM05D007523 ORTHO05D009520 1.8e-24 116.7 175 52.0
Migut.E01344 Erythranthe guttata HOM05D007523 ORTHO05D009520 3.0e-24 115.9 170 47.6
Gohir.D12G176600 Gossypium hirsutum HOM05D007523 ORTHO05D009520 3.0e-24 115.9 164 51.2
Nn3g19239 Nelumbo nucifera HOM05D007523 ORTHO05D009520 3.0e-24 115.9 147 56.5
ECA240G1522 Erigeron canadensis HOM05D007523 ORTHO05D009520 4.0e-24 115.5 154 55.2
FvH4_5g23880 Fragaria vesca HOM05D007523 ORTHO05D009520 6.7e-24 114.8 175 49.7
FAN18G0623 Fragaria x ananassa HOM05D007523 ORTHO05D009520 6.7e-24 114.8 175 49.7
FAN18G3486 Fragaria x ananassa HOM05D007523 ORTHO05D009520 6.7e-24 114.8 175 49.7
MSTRG.1775 Avicennia marina HOM05D007523 ORTHO05D009520 8.8e-24 114.4 142 56.3
RcHm_v2.0_Chr7g0213271 Rosa chinensis HOM05D007523 ORTHO05D009520 8.8e-24 114.4 176 50.0
SGA_v2.0_scaffold96G29060 Striga asiatica HOM05D007523 ORTHO05D009520 1.1e-23 114.0 127 59.8
arahy.Tifrunner.gnm1.ann1.7DC73F Arachis hypogaea HOM05D007523 ORTHO05D009520 2.6e-23 112.8 121 62.8
Ca_22486_v3 Cicer arietinum L. HOM05D007523 ORTHO05D009520 2.6e-23 112.8 160 54.4
arahy.Tifrunner.gnm1.ann1.19GUIE Arachis hypogaea HOM05D007523 ORTHO05D009520 3.3e-23 112.5 121 62.8
EL10Ac5g11951 Beta vulgaris HOM05D007523 ORTHO05D009520 5.7e-23 111.7 88 83.0
CDE05G0732 Ceratophyllum demersum HOM05D007523 ORTHO05D009520 5.7e-23 111.7 137 59.1
Phvul.003G279400 Phaseolus vulgaris HOM05D007523 ORTHO05D009520 7.5e-23 111.3 151 54.3
Sc22g0001970 Simmondsia chinensis HOM05D007523 ORTHO05D009520 9.7e-23 110.9 145 55.9
Migut.A00547 Erythranthe guttata HOM05D007523 ORTHO05D009520 1.3e-22 110.5 131 55.0
VMungo0251G0133 Vigna mungo HOM05D007523 ORTHO05D009520 1.3e-22 110.5 119 63.9
MD06G1014600 Malus domestica HOM05D007523 ORTHO05D009520 3.7e-22 109.0 136 57.4
SalBow8G2402 Salvia bowleyana HOM05D007523 ORTHO05D009520 3.7e-22 109.0 117 63.2
FAN04G1224 Fragaria x ananassa HOM05D007523 ORTHO05D009520 4.8e-22 108.6 147 55.1
Solyc12g096090.2 Solanum lycopersicum HOM05D007523 ORTHO05D009520 6.3e-22 108.2 178 47.2
CAN.G947.41 Capsicum annuum HOM05D007523 ORTHO05D009520 1.1e-21 107.5 150 52.0
PGR031G0795 Punica granatum HOM05D007523 ORTHO05D009520 1.4e-21 107.1 164 50.6
PGSC0003DMG400029292 Solanum tuberosum HOM05D007523 ORTHO05D009520 1.8e-21 106.7 150 50.0
Glyma.16G104300 Glycine max HOM05D007523 ORTHO05D009520 4.1e-21 105.5 148 54.1
Sopen12g031980 Solanum pennellii HOM05D007523 ORTHO05D009520 9.1e-21 104.4 150 50.0
Nitab4.5_0000943g0130 Nicotiana tabacum HOM05D007523 ORTHO05D009520 1.2e-20 104.0 169 49.1
unitig_0.g2217 Utricularia gibba HOM05D007523 ORTHO05D009520 2.0e-20 103.2 164 51.2
Nitab4.5_0006741g0030 Nicotiana tabacum HOM05D007523 ORTHO05D009520 4.5e-20 102.1 138 54.3
Actinidia04633 Actinidia chinensis HOM05D007523 ORTHO05D009520 1.0e-19 100.9 178 42.7
AUR62007395 Chenopodium quinoa HOM05D002287 ORTHO05D009520 1.0e-19 100.9 103 68.9
Ah.12g055890 Amaranthus hybridus HOM05D002287 ORTHO05D002588 1.3e-19 100.5 80 81.2
AUR62027336 Chenopodium quinoa HOM05D007523 ORTHO05D009520 2.2e-19 99.8 92 73.9
SalBow4G0950 Salvia bowleyana HOM05D007523 ORTHO05D009520 3.8e-19 99.0 80 78.8
HPP92_012195 Vanilla planifolia HOM05D007523 ORTHO05D009520 5.0e-19 98.6 95 72.6
MBI18_g28211_MAGBIO Magnolia biondii HOM05D007523 ORTHO05D009520 1.9e-18 96.7 116 56.9
AagrBONN_evm.TU.Sc2ySwM_368.2556 Anthoceros agrestis HOM05D007523 ORTHO05D009520 1.6e-17 93.6 122 47.5
Mapoly0024s0063 Marchantia polymorpha HOM05D007523 ORTHO05D009520 2.7e-17 92.8 130 52.3
Os07g0143600 Oryza sativa ssp. japonica HOM05D007523 ORTHO05D009520 8.0e-17 91.3 137 50.4
Pp3c19_7810 Physcomitrium patens HOM05D007523 ORTHO05D009520 2.3e-16 89.7 92 57.6
Peaxi162Scf00972g00043 Petunia axillaris HOM05D007523 ORTHO05D009520 1.2e-15 87.4 87 69.0
Mapoly0010s0014 Marchantia polymorpha HOM05D007523 ORTHO05D009520 1.4e-13 80.5 70 77.1
SMO353G0121 Selaginella moellendorffii HOM05D007523 ORTHO05D009520 9.1e-13 77.8 91 58.2
MSTRG.11889 Avicennia marina HOM05D007523 ORTHO05D009520 2.0e-12 76.6 78 69.2
SMO364G0280 Selaginella moellendorffii HOM05D007523 ORTHO05D009520 7.7e-12 74.7 78 65.4
COL.COLO4_11248 Corchorus olitorius HOM05D007523 ORTHO05D009520 1.4e-08 63.9 109 51.4
AUR62044264 Chenopodium quinoa HOM05D007523 ORTHO05D009520 7.5e-07 58.2 73 71.2


User provided reference genes

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