Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s2085 Capsella rubella HOM05D003201 ORTHO05D008914 1.0e-159 566.6 278 100.0
AL7G33570 Arabidopsis lyrata HOM05D003201 ORTHO05D008914 1.8e-148 529.3 278 92.8
AT4G20325 Arabidopsis thaliana HOM05D003201 ORTHO05D008914 4.1e-148 528.1 278 92.4
Thhalv10025951m.g Eutrema salsugineum HOM05D003201 ORTHO05D008914 5.2e-143 511.1 278 89.6
BcaNung03501 Brassica carinata HOM05D003201 ORTHO05D008914 3.7e-141 505.0 281 89.7
C07p50860 Brassica napus HOM05D000936 ORTHO05D008914 3.7e-141 505.0 281 89.7
CARHR227150 Cardamine hirsuta HOM05D003201 ORTHO05D008914 1.4e-140 503.1 279 89.2
BcaC06g30651 Brassica carinata HOM05D003201 ORTHO05D008914 2.4e-140 502.3 281 89.3
Sp7g18670 Schrenkiella parvula HOM05D003201 ORTHO05D008914 3.5e-139 498.4 281 88.3
BolC7t45584H Brassica oleracea HOM05D000936 ORTHO05D008914 2.3e-138 495.7 281 88.3
A03p52400 Brassica napus HOM05D000936 ORTHO05D008914 2.8e-136 488.8 281 87.5
BraA03t14319Z Brassica rapa HOM05D003201 ORTHO05D008914 7.5e-134 480.7 281 86.1
BraA01t01146Z Brassica rapa HOM05D003201 ORTHO05D008914 1.1e-132 476.9 275 86.2
C01p14340 Brassica napus HOM05D003201 ORTHO05D008914 2.0e-131 472.6 278 84.2
BolC1t01393H Brassica oleracea HOM05D000280 ORTHO05D004510 7.8e-131 470.7 275 84.4
A01p12040 Brassica napus HOM05D003201 ORTHO05D008914 2.3e-130 469.2 275 85.5
Aa31LG6G2740 Aethionema arabicum HOM05D003201 ORTHO05D008914 2.0e-126 456.1 274 81.8
BcaNung03722 Brassica carinata HOM05D000936 ORTHO05D001411 6.6e-122 441.0 281 79.7
THA.LOC104811993 Tarenaya hassleriana HOM05D003201 ORTHO05D008914 3.2e-116 422.2 282 75.5
GSVIVG01035604001 Vitis vinifera HOM05D003201 ORTHO05D008914 3.4e-94 349.0 275 62.9
Manes.02G219100 Manihot esculenta HOM05D003201 ORTHO05D008914 3.8e-93 345.5 276 62.0
Psat5g023760 Pisum sativum HOM05D003201 ORTHO05D008914 1.2e-91 340.5 276 60.5
MD15G1105100 Malus domestica HOM05D003201 ORTHO05D008914 3.5e-91 339.0 276 60.1
QL12p025722 Quercus lobata HOM05D003201 ORTHO05D008914 7.9e-91 337.8 275 61.1
TPR.G12401 Trifolium pratense HOM05D003201 ORTHO05D008914 2.3e-90 336.3 273 61.2
CSS0009288 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 8.7e-90 334.3 277 59.9
CsaV3_2G031270 Cucumis sativus L. HOM05D003201 ORTHO05D008914 8.7e-90 334.3 281 60.5
Thecc.03G318200 Theobroma cacao HOM05D003201 ORTHO05D008914 1.1e-89 334.0 276 58.7
CSS0050223 Camellia sinensis var. sinensis HOM05D003201 ORTHO05D008914 1.5e-89 333.6 277 59.9
Cpa.g.sc30.52 Carica papaya HOM05D003201 ORTHO05D008914 3.3e-89 332.4 274 61.3
Ciclev10016172m.g Citrus clementina HOM05D003201 ORTHO05D008914 3.3e-89 332.4 275 60.0
Peaxi162Scf00314g00636 Petunia axillaris HOM05D003201 ORTHO05D008914 7.4e-89 331.3 278 59.7
MELO3C011176.2 Cucumis melo HOM05D003201 ORTHO05D008914 2.1e-88 329.7 274 60.2
ClCG08G012570 Citrullus lanatus HOM05D003201 ORTHO05D008914 3.7e-88 328.9 280 60.7
Glyma.06G078200 Glycine max HOM05D003201 ORTHO05D008914 4.8e-88 328.6 277 58.5
Duzib084G1420 Durio zibethinus HOM05D003201 ORTHO05D008914 5.3e-87 325.1 282 57.4
CiPaw.07G210300 Carya illinoinensis HOM05D003201 ORTHO05D008914 2.6e-86 322.8 275 59.3
Gohir.D12G205000 Gossypium hirsutum HOM05D003201 ORTHO05D008914 3.4e-86 322.4 275 58.5
Gohir.A12G202300 Gossypium hirsutum HOM05D003201 ORTHO05D008914 9.9e-86 320.9 275 58.2
Nitab4.5_0012553g0020 Nicotiana tabacum HOM05D003201 ORTHO05D008914 9.9e-86 320.9 281 58.7
Glyma.04G077000 Glycine max HOM05D003201 ORTHO05D008914 1.7e-85 320.1 278 59.4
Potri.006G280600 Populus trichocarpa HOM05D003201 ORTHO05D008914 1.7e-85 320.1 279 61.3
Aqoxy7G00979 Aquilegia oxysepala HOM05D003201 ORTHO05D008914 3.8e-85 318.9 281 58.4
DCAR_002183 Daucus carota HOM05D003201 ORTHO05D008914 3.8e-85 318.9 274 58.8
Lj1g0010900 Lotus japonicus HOM05D003201 ORTHO05D008914 3.8e-85 318.9 276 58.0
Hund03239 Selenicereus undatus HOM05D003201 ORTHO05D008914 3.8e-85 318.9 275 58.5
Gorai.008G219900 Gossypium raimondii HOM05D003201 ORTHO05D008914 4.9e-85 318.5 276 57.6
Ca_15643_v3 Cicer arietinum L. HOM05D000163 ORTHO05D000219 6.4e-85 318.2 260 61.2
Prupe.1G456900 Prunus persica HOM05D003201 ORTHO05D008914 1.9e-84 316.6 271 58.7
Nitab4.5_0000391g0210 Nicotiana tabacum HOM05D003201 ORTHO05D008914 7.1e-84 314.7 278 57.9
Cc11_g12550 Coffea canephora HOM05D003201 ORTHO05D008914 9.3e-84 314.3 277 59.9
CAN.G964.23 Capsicum annuum HOM05D003201 ORTHO05D008914 1.6e-83 313.5 279 58.1
Actinidia29333 Actinidia chinensis HOM05D003201 ORTHO05D008914 2.7e-83 312.8 278 57.2
Lalb_Chr11g0064231 Lupinus albus HOM05D003201 ORTHO05D008914 6.0e-83 311.6 269 59.1
Solyc05g012940.4 Solanum lycopersicum HOM05D003201 ORTHO05D008914 7.9e-83 311.2 280 57.5
CANSAT54G1971 Cannabis sativa HOM05D003201 ORTHO05D008914 1.8e-82 310.1 277 57.0
Sopen05g007740 Solanum pennellii HOM05D003201 ORTHO05D008914 2.3e-82 309.7 280 57.5
PGSC0003DMG402028340 Solanum tuberosum HOM05D003201 ORTHO05D008914 3.0e-82 309.3 279 56.3
RcHm_v2.0_Chr6g0305311 Rosa chinensis HOM05D003201 ORTHO05D008914 5.1e-82 308.5 276 55.8
Dinv37468 Davidia involucrata HOM05D003201 ORTHO05D008914 8.7e-82 307.8 231 64.5
SGA_v2.0_scaffold45G16974 Striga asiatica HOM05D003201 ORTHO05D008914 8.7e-82 307.8 276 56.2
SalBow8G4280 Salvia bowleyana HOM05D003201 ORTHO05D008914 1.5e-81 307.0 277 56.0
EL10Ac8g19259 Beta vulgaris HOM05D003201 ORTHO05D008914 4.3e-81 305.4 276 58.3
Eucgr.E04307 Eucalyptus grandis HOM05D003201 ORTHO05D008914 5.6e-81 305.1 275 56.4
arahy.Tifrunner.gnm1.ann1.6BLG7S Arachis hypogaea HOM05D003201 ORTHO05D008914 1.3e-80 303.9 302 53.0
PGR042G2091 Punica granatum HOM05D003201 ORTHO05D008914 2.1e-80 303.1 277 56.7
Migut.E00069 Erythranthe guttata HOM05D003201 ORTHO05D008914 4.8e-80 302.0 277 56.7
arahy.Tifrunner.gnm1.ann1.N5J460 Arachis hypogaea HOM05D003201 ORTHO05D008914 8.2e-80 301.2 305 52.5
FvH4_2g36540 Fragaria vesca HOM05D003201 ORTHO05D008914 1.2e-78 297.4 278 55.0
Atru.BG.264.p Acer truncatum HOM05D003201 ORTHO05D008914 1.5e-78 297.0 264 59.1
VMungo1309G0938 Vigna mungo HOM05D003201 ORTHO05D008914 1.5e-78 297.0 348 46.8
PSO782G1293 Papaver somniferum HOM05D003201 ORTHO05D008914 2.6e-78 296.2 274 54.7
Phvul.009G102800 Phaseolus vulgaris HOM05D003201 ORTHO05D008914 5.8e-78 295.0 201 66.7
FAN15G0760 Fragaria x ananassa HOM05D003201 ORTHO05D008914 1.0e-77 294.3 276 55.4
HanXRQChr15g0468831 Helianthus annuus HOM05D003201 ORTHO05D008914 1.3e-77 293.9 275 54.2
AUR62028026 Chenopodium quinoa HOM05D003201 ORTHO05D008914 3.8e-77 292.4 279 52.7
TWI18G0285 Tripterygium wilfordii HOM05D003201 ORTHO05D008914 8.4e-77 291.2 270 56.3
Rhsim07G0174100 Rhododendron simsii HOM05D003201 ORTHO05D008914 2.1e-75 286.6 375 44.5
ECA233G2337 Erigeron canadensis HOM05D004148 ORTHO05D004709 1.8e-74 283.5 274 52.9
Lsat_1_v5_gn_5_73181 Lactuca sativa HOM05D003201 ORTHO05D008914 6.9e-71 271.6 253 53.8
ATR0686G110 Amborella trichopoda HOM05D003201 ORTHO05D008914 3.8e-69 265.8 232 55.6
Sabra06G0217200 Salix brachista HOM05D002037 ORTHO05D005261 6.1e-67 258.5 330 47.3
FAN20G1097 Fragaria x ananassa HOM05D000163 ORTHO05D008914 3.9e-66 255.8 247 55.1
HPP92_024271 Vanilla planifolia HOM05D003201 ORTHO05D008914 4.3e-65 252.3 256 52.0
Sc23g0004340 Simmondsia chinensis HOM05D003201 ORTHO05D008914 5.7e-65 251.9 205 59.5
SEGI_35572 Sequoiadendron giganteum HOM05D003201 ORTHO05D008914 2.9e-61 239.6 279 45.5
AUR62020698 Chenopodium quinoa HOM05D003201 ORTHO05D008914 4.2e-60 235.7 277 46.2
vmacro05085 Vaccinium macrocarpon HOM05D003201 ORTHO05D008914 1.8e-58 230.3 497 33.4
TAR636G2614 Trochodendron aralioides HOM05D003201 ORTHO05D008914 2.3e-58 229.9 154 68.8
Potri.006G281101 Populus trichocarpa HOM05D003201 ORTHO05D008914 3.5e-54 216.1 169 62.1
Mapoly0037s0034 Marchantia polymorpha HOM05D003201 ORTHO05D008914 2.5e-52 209.9 208 48.1
Sed0017242 Sechium edule HOM05D003201 ORTHO05D008914 5.2e-50 202.2 184 57.6
FAN27G2114 Fragaria x ananassa HOM05D000163 ORTHO05D000219 3.5e-46 189.5 216 50.5
unitig_32.g11042 Utricularia gibba HOM05D003201 ORTHO05D008914 1.7e-45 187.2 191 52.9
AagrBONN_evm.TU.Sc2ySwM_344.2003 Anthoceros agrestis HOM05D003201 ORTHO05D008914 3.8e-45 186.0 229 41.9
Pp3c10_22770 Physcomitrium patens HOM05D003201 ORTHO05D008914 9.4e-44 181.4 241 39.8
SHI31610 Sapria himalayana HOM05D003201 ORTHO05D008914 3.1e-39 166.4 113 65.5
SMO115G0061 Selaginella moellendorffii HOM05D003201 ORTHO05D008914 4.5e-38 162.5 218 37.6
Zm00001eb079750 Zea mays HOM05D003201 ORTHO05D008914 7.7e-38 161.8 183 50.8
MD08G1125300 Malus domestica HOM05D003201 ORTHO05D008914 7.0e-31 138.7 216 38.9
Nn7g38306 Nelumbo nucifera HOM05D003201 ORTHO05D008914 1.1e-28 131.3 98 60.2
CDE05G1961 Ceratophyllum demersum HOM05D003201 ORTHO05D008914 9.8e-25 118.2 141 49.6
COL.COLO4_10365 Corchorus olitorius HOM05D003201 ORTHO05D008914 6.3e-24 115.5 176 41.5
Os04g0476400 Oryza sativa ssp. japonica HOM05D003201 ORTHO05D008914 5.0e-21 105.9 89 56.2
TPR.G12326 Trifolium pratense HOM05D003201 ORTHO05D008914 1.1e-20 104.8 78 62.8
Hma1.2p1_1357F.1_g277905 Hydrangea macrophylla HOM05D003201 ORTHO05D008914 9.5e-20 101.7 68 63.2
CBR_g23989 Chara braunii HOM05D003201 ORTHO05D008914 2.0e-17 94.0 68 60.3
PRCOL_00004174 Prasinoderma coloniale HOM05D003201 ORTHO05D008914 7.0e-15 85.5 213 31.9
Cre07.g320800 Chlamydomonas reinhardtii HOM05D003201 ORTHO05D008914 7.3e-12 75.5 329 23.1
CBR_g23991 Chara braunii HOM05D003201 ORTHO05D008914 1.4e-07 61.2 46 52.2


User provided reference genes

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