Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s2055 Capsella rubella HOM05D004305 ORTHO05D005159 1.5e-194 682.9 426 100.0
AT4G20880 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 6.1e-135 485.0 427 78.5
AL7G33270 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 2.7e-130 469.5 438 78.5
CARHR227440 Cardamine hirsuta HOM05D004305 ORTHO05D005159 4.7e-111 405.6 445 68.1
Sp7g18970 Schrenkiella parvula HOM05D004305 ORTHO05D005159 1.2e-109 401.0 443 68.2
Thhalv10025304m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 5.4e-99 365.5 448 64.1
BcaNung04140 Brassica carinata HOM05D004305 ORTHO05D005159 1.0e-97 361.3 450 59.1
BcaNung07356 Brassica carinata HOM05D004305 ORTHO05D005159 8.1e-95 351.7 430 61.4
C07p50970 Brassica napus HOM05D004305 ORTHO05D005159 1.6e-90 337.4 432 57.6
BcaNung05413 Brassica carinata HOM05D004305 ORTHO05D005159 7.8e-90 335.1 432 56.9
BolC7t45599H Brassica oleracea HOM05D004305 ORTHO05D005159 1.7e-89 334.0 441 56.2
C01p14710 Brassica napus HOM05D004305 ORTHO05D005159 2.1e-87 327.0 451 59.4
BolC1t01423H Brassica oleracea HOM05D004305 ORTHO05D005159 2.1e-87 327.0 451 59.4
BraA03t14328Z Brassica rapa HOM05D004305 ORTHO05D005159 8.9e-86 321.6 436 55.3
BcaB03g11678 Brassica carinata HOM05D004305 ORTHO05D005159 2.0e-85 320.5 446 54.7
A01p12300 Brassica napus HOM05D004305 ORTHO05D005159 7.6e-85 318.5 448 59.6
BraA01t01174Z Brassica rapa HOM05D004305 ORTHO05D005159 8.4e-84 315.1 447 59.7
BcaC09g51296 Brassica carinata HOM05D004305 ORTHO05D005159 3.3e-80 303.1 443 58.0
A03p52530 Brassica napus HOM05D004305 ORTHO05D005159 5.3e-78 295.8 418 54.1
BolC3t20584H Brassica oleracea HOM05D004305 ORTHO05D005159 2.2e-76 290.4 440 55.0
BcaC01g00679 Brassica carinata HOM05D004305 ORTHO05D005159 9.3e-75 285.0 440 54.3
C03p83040 Brassica napus HOM05D004305 ORTHO05D005159 9.3e-75 285.0 440 54.3
A08p14960 Brassica napus HOM05D004305 ORTHO05D005159 8.1e-71 271.9 431 51.7
BraA08t33477Z Brassica rapa HOM05D004305 ORTHO05D005159 8.1e-71 271.9 431 51.7
THA.LOC104806249 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 9.0e-62 241.9 426 53.5
Aa31LG6G2950 Aethionema arabicum HOM05D004305 ORTHO05D005159 1.2e-61 241.5 446 48.0
THA.LOC104812214 Tarenaya hassleriana HOM05D004305 ORTHO05D005159 1.2e-61 241.5 452 51.1
Sp2g09190 Schrenkiella parvula HOM05D004305 ORTHO05D005159 9.4e-43 178.7 431 42.2
BcaC04g21838 Brassica carinata HOM05D004305 ORTHO05D005159 8.8e-41 172.2 418 39.0
C09p26810 Brassica napus HOM05D004305 ORTHO05D005159 8.8e-41 172.2 418 39.0
BolC9t55570H Brassica oleracea HOM05D004305 ORTHO05D005159 4.3e-40 169.9 421 38.5
A09p21070 Brassica napus HOM05D004305 ORTHO05D005159 1.7e-39 167.9 422 39.1
Thhalv10003311m.g Eutrema salsugineum HOM05D004305 ORTHO05D005159 1.4e-38 164.9 416 40.4
CARHR178780 Cardamine hirsuta HOM05D004305 ORTHO05D005159 6.9e-38 162.5 417 39.1
BcaB07g30950 Brassica carinata HOM05D004305 ORTHO05D005159 1.2e-37 161.8 423 39.2
BraA09t37708Z Brassica rapa HOM05D004305 ORTHO05D005159 1.5e-37 161.4 421 39.4
BcaB07g30530 Brassica carinata HOM05D004305 ORTHO05D005159 3.6e-34 150.2 423 37.8
AL8G15540 Arabidopsis lyrata HOM05D004305 ORTHO05D005159 6.1e-34 149.4 419 39.1
BcaC06g31624 Brassica carinata HOM05D004305 ORTHO05D005159 7.9e-34 149.1 415 36.9
CANSAT35G0942 Cannabis sativa HOM05D004305 ORTHO05D005159 1.4e-33 148.3 478 31.8
Cpa.g.c43226 Carica papaya HOM05D004305 ORTHO05D005159 3.9e-33 146.7 459 34.6
C07p27080 Brassica napus HOM05D004305 ORTHO05D005159 1.1e-32 145.2 418 37.1
Ciclev10015182m.g Citrus clementina HOM05D004305 ORTHO05D005159 2.6e-32 144.1 467 33.0
BcaC06g34566 Brassica carinata HOM05D004305 ORTHO05D005159 3.3e-32 143.7 418 36.8
BolC7t43238H Brassica oleracea HOM05D004305 ORTHO05D005159 7.4e-32 142.5 418 37.3
BraA06t27598Z Brassica rapa HOM05D004305 ORTHO05D005159 2.8e-31 140.6 416 37.3
AT5G44350 Arabidopsis thaliana HOM05D004305 ORTHO05D005159 3.7e-31 140.2 420 38.1
Atru.chr10.781 Acer truncatum HOM05D004305 ORTHO05D005159 3.1e-30 137.1 437 35.9
BraA02t07875Z Brassica rapa HOM05D004305 ORTHO05D005159 1.5e-29 134.8 414 34.1
Cfa000806 Carpinus fangiana HOM05D004305 ORTHO05D005159 1.3e-28 131.7 464 32.5
Thecc.06G003200 Theobroma cacao HOM05D004305 ORTHO05D005159 2.9e-28 130.6 443 31.6
GSVIVG01021709001 Vitis vinifera HOM05D004305 ORTHO05D005159 5.0e-28 129.8 460 34.6
Carub.0008s0412 Capsella rubella HOM05D004305 ORTHO05D005159 1.5e-27 128.3 423 37.1
A02p28380 Brassica napus HOM05D004305 ORTHO05D005159 2.1e-26 124.4 415 33.5
CSS0026993 Camellia sinensis var. sinensis HOM05D004305 ORTHO05D005159 2.1e-26 124.4 479 32.4
Duzib235G0167 Durio zibethinus HOM05D004305 ORTHO05D005159 2.1e-26 124.4 418 34.0
TWI15G0126 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 2.7e-26 124.0 451 32.4
A06p47270 Brassica napus HOM05D004305 ORTHO05D005159 1.0e-25 122.1 413 34.9
Haze_05867 Corylus avellana HOM05D004305 ORTHO05D005159 3.9e-25 120.2 434 36.6
Potri.001G464300 Populus trichocarpa HOM05D004305 ORTHO05D005159 5.2e-25 119.8 457 31.5
Prupe.4G095400 Prunus persica HOM05D004305 ORTHO05D005159 3.3e-24 117.1 196 43.9
Eucgr.D00100 Eucalyptus grandis HOM05D004305 ORTHO05D005159 4.4e-24 116.7 341 34.0
MSTRG.7546 Avicennia marina HOM05D004305 ORTHO05D005159 1.3e-23 115.2 465 30.3
Duzib192G0088 Durio zibethinus HOM05D004305 ORTHO05D005159 2.8e-23 114.0 414 32.9
Actinidia31373 Actinidia chinensis HOM05D004305 ORTHO05D005159 3.7e-23 113.6 216 45.4
DCAR_003840 Daucus carota HOM05D004305 ORTHO05D005159 6.3e-23 112.8 432 28.9
Migut.M01906 Erythranthe guttata HOM05D004305 ORTHO05D005159 1.4e-22 111.7 456 34.4
FvH4_3g10700 Fragaria vesca HOM05D004305 ORTHO05D005159 1.4e-22 111.7 457 30.0
CiPaw.09G142800 Carya illinoinensis HOM05D004305 ORTHO05D005159 3.1e-22 110.5 174 46.0
FAN16G1832 Fragaria x ananassa HOM05D004305 ORTHO05D005159 3.1e-22 110.5 450 31.6
Dinv06927 Davidia involucrata HOM05D004305 ORTHO05D005159 7.0e-22 109.4 370 31.6
Lalb_Chr18g0058121 Lupinus albus HOM05D004305 ORTHO05D005159 9.1e-22 109.0 426 33.3
Actinidia13459 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.2e-21 108.6 362 33.4
Lalb_Chr07g0189031 Lupinus albus HOM05D004305 ORTHO05D005159 1.2e-21 108.6 457 28.4
Manes.14G124700 Manihot esculenta HOM05D004305 ORTHO05D005159 1.6e-21 108.2 473 29.0
Oeu041117.1 Olea europaea HOM05D004305 ORTHO05D005159 2.0e-21 107.8 448 31.0
Sabra11G0141400 Salix brachista HOM05D004305 ORTHO05D005159 2.0e-21 107.8 466 29.4
ClCG03G008260 Citrullus lanatus HOM05D004305 ORTHO05D005159 2.6e-21 107.5 446 30.5
FAN11G3528 Fragaria x ananassa HOM05D004305 ORTHO05D005159 4.5e-21 106.7 457 29.8
Psat1g165840 Pisum sativum HOM05D004305 ORTHO05D005159 7.7e-21 105.9 425 32.5
Oeu040075.1 Olea europaea HOM05D004305 ORTHO05D005159 1.3e-20 105.1 327 34.3
C02p44970 Brassica napus HOM05D004305 ORTHO05D005159 2.2e-20 104.4 420 32.6
Lj1P1160T59 Lonicera japonica HOM05D004305 ORTHO05D005159 2.9e-20 104.0 459 29.8
Glyma.15G132400 Glycine max HOM05D004305 ORTHO05D005159 5.0e-20 103.2 422 32.9
Sabra16G0315300 Salix brachista HOM05D004305 ORTHO05D005159 5.0e-20 103.2 470 30.0
Medtr2g031350 Medicago truncatula HOM05D004305 ORTHO05D005159 8.5e-20 102.4 440 31.8
RcHm_v2.0_Chr5g0017411 Rosa chinensis HOM05D004305 ORTHO05D005159 8.5e-20 102.4 458 31.2
COL.COLO4_26846 Corchorus olitorius HOM05D004305 ORTHO05D005159 1.5e-19 101.7 292 34.9
Gorai.010G144500 Gossypium raimondii HOM05D004305 ORTHO05D005159 1.5e-19 101.7 426 28.6
Lj6g0010125 Lotus japonicus HOM05D004305 ORTHO05D005159 1.9e-19 101.3 436 33.9
MD05G1269300 Malus domestica HOM05D004305 ORTHO05D005159 1.9e-19 101.3 502 30.7
Sabra16G0313900 Salix brachista HOM05D004305 ORTHO05D005159 3.2e-19 100.5 472 29.2
QL05p063597 Quercus lobata HOM05D004305 ORTHO05D005159 4.2e-19 100.1 458 31.9
QL93p0201_0023 Quercus lobata HOM05D004305 ORTHO05D005159 4.2e-19 100.1 458 31.9
SGA_v2.0_scaffold1G00275 Striga asiatica HOM05D004305 ORTHO05D005159 4.2e-19 100.1 427 30.9
Manes.06G058700 Manihot esculenta HOM05D004305 ORTHO05D005159 9.4e-19 99.0 475 27.6
Gohir.D06G124500 Gossypium hirsutum HOM05D004305 ORTHO05D005159 1.2e-18 98.6 426 27.7
Gohir.A06G119900 Gossypium hirsutum HOM05D004305 ORTHO05D005159 1.6e-18 98.2 426 27.7
Potri.011G162400 Populus trichocarpa HOM05D004305 ORTHO05D005159 1.6e-18 98.2 350 29.7
MELO3C007060.2 Cucumis melo HOM05D004305 ORTHO05D005159 2.1e-18 97.8 334 32.3
Glyma.09G026200 Glycine max HOM05D004305 ORTHO05D005159 2.7e-18 97.4 428 33.6
Ca_00869_v3 Cicer arietinum L. HOM05D004305 ORTHO05D005159 4.7e-18 96.7 434 29.5
FAN21G2878 Fragaria x ananassa HOM05D004305 ORTHO05D005159 4.7e-18 96.7 444 29.5
BcaC03g16656 Brassica carinata HOM05D004305 ORTHO05D005159 8.0e-18 95.9 336 32.7
Lj4g0027556 Lotus japonicus HOM05D004305 ORTHO05D005159 8.0e-18 95.9 439 28.9
MSTRG.16299 Avicennia marina HOM05D004305 ORTHO05D005159 1.0e-17 95.5 475 29.1
Cc09_g07570 Coffea canephora HOM05D004305 ORTHO05D005159 1.0e-17 95.5 450 32.0
Phvul.006G126000 Phaseolus vulgaris HOM05D004305 ORTHO05D005159 1.0e-17 95.5 425 28.5
VMungo0540G0062 Vigna mungo HOM05D004305 ORTHO05D005159 1.0e-17 95.5 417 30.0
Lsat_1_v5_gn_9_25860 Lactuca sativa HOM05D004305 ORTHO05D005159 1.8e-17 94.7 430 29.1
MD10G1248100 Malus domestica HOM05D004305 ORTHO05D005159 2.3e-17 94.4 506 32.2
PSO675G0053 Papaver somniferum HOM05D004305 ORTHO05D005159 2.3e-17 94.4 498 26.9
ClCG01G025280 Citrullus lanatus HOM05D004305 ORTHO05D005159 3.0e-17 94.0 448 28.1
Oeu060316.1 Olea europaea HOM05D004305 ORTHO05D005159 3.0e-17 94.0 472 30.9
PGSC0003DMG400021011 Solanum tuberosum HOM05D004305 ORTHO05D005159 3.0e-17 94.0 446 29.6
MELO3C002832.2 Cucumis melo HOM05D004305 ORTHO05D005159 5.2e-17 93.2 444 29.3
FAN25G2552 Fragaria x ananassa HOM05D004305 ORTHO05D005159 5.2e-17 93.2 466 30.3
Nn1g03508 Nelumbo nucifera HOM05D004305 ORTHO05D005159 8.8e-17 92.4 458 28.2
CsaV3_1G037140 Cucumis sativus L. HOM05D004305 ORTHO05D005159 3.4e-16 90.5 447 30.0
EL10Ac4g07786 Beta vulgaris HOM05D023924 ORTHO05D023401 5.7e-16 89.7 58 72.4
TWI38G0672 Tripterygium wilfordii HOM05D004305 ORTHO05D005159 5.7e-16 89.7 444 33.8
Sc03g0008520 Simmondsia chinensis HOM05D004305 ORTHO05D005159 7.5e-16 89.4 237 33.8
BolC2t10530H Brassica oleracea HOM05D004305 ORTHO05D005159 9.8e-16 89.0 221 37.1
HanXRQChr08g0237311 Helianthus annuus HOM05D004305 ORTHO05D005159 9.8e-16 89.0 439 28.7
AUR62014849 Chenopodium quinoa HOM05D002349 ORTHO05D002464 2.2e-15 87.8 57 75.4
Ah.04g165990 Amaranthus hybridus HOM05D023924 ORTHO05D023401 4.8e-15 86.7 68 70.6
Nn1g07139 Nelumbo nucifera HOM05D004305 ORTHO05D005159 4.8e-15 86.7 180 35.6
CsaV3_6G052500 Cucumis sativus L. HOM05D004305 ORTHO05D005159 6.3e-15 86.3 333 30.0
Peaxi162Scf00395g00054 Petunia axillaris HOM05D004305 ORTHO05D005159 6.3e-15 86.3 432 31.0
MBI02_g39880_MAGBIO Magnolia biondii HOM05D004305 ORTHO05D005159 2.4e-14 84.3 180 37.2
Rhsim02G0163100 Rhododendron simsii HOM05D004305 ORTHO05D005159 5.4e-14 83.2 507 27.2
PGR083G0011 Punica granatum HOM05D004305 ORTHO05D005159 7.0e-14 82.8 332 33.1
Actinidia32347 Actinidia chinensis HOM05D004305 ORTHO05D005159 1.2e-13 82.0 268 31.7
SGA_v2.0_scaffold223G42870 Striga asiatica HOM05D004305 ORTHO05D005159 1.2e-13 82.0 426 28.9
unitig_32.g10874 Utricularia gibba HOM05D004305 ORTHO05D005159 1.2e-13 82.0 272 31.6
SHI24805 Sapria himalayana HOM05D004305 ORTHO05D005159 1.3e-12 78.6 61 67.2
Solyc02g022920.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 1.3e-12 78.6 437 26.3
Nitab4.5_0000076g0140 Nicotiana tabacum HOM05D004305 ORTHO05D005159 2.2e-12 77.8 448 30.6
Nitab4.5_0001583g0210 Nicotiana tabacum HOM05D004305 ORTHO05D005159 2.2e-12 77.8 201 33.8
Oeu015165.2 Olea europaea HOM05D004305 ORTHO05D005159 2.2e-12 77.8 458 30.1
Sed0024509 Sechium edule HOM05D004305 ORTHO05D005159 2.9e-12 77.4 420 28.3
unitig_748.g8282 Utricularia gibba HOM05D004305 ORTHO05D005159 2.5e-11 74.3 303 30.0
Nitab4.5_0004204g0010 Nicotiana tabacum HOM05D004305 ORTHO05D005159 5.5e-11 73.2 444 31.3
ECA247G2099 Erigeron canadensis HOM05D004305 ORTHO05D005159 1.6e-10 71.6 434 28.6
Sed0021635 Sechium edule HOM05D004305 ORTHO05D005159 2.7e-10 70.9 427 28.6
CDE02G2479 Ceratophyllum demersum HOM05D006189 ORTHO05D007765 3.6e-10 70.5 60 63.3
Psat7g094000 Pisum sativum HOM05D004305 ORTHO05D005159 8.0e-10 69.3 430 26.0
TPR.G30380 Trifolium pratense HOM05D004305 ORTHO05D005159 1.0e-09 68.9 182 41.2
Nn2g11492 Nelumbo nucifera HOM05D004305 ORTHO05D005159 1.2e-08 65.5 58 58.6
Sopen02g019200 Solanum pennellii HOM05D004305 ORTHO05D005159 1.5e-08 65.1 423 24.8
PGSC0003DMG400021114 Solanum tuberosum HOM05D004305 ORTHO05D005159 2.0e-08 64.7 413 25.7
Solyc02g070040.1 Solanum lycopersicum HOM05D004305 ORTHO05D005159 2.6e-08 64.3 423 24.8
Sopen02g006550 Solanum pennellii HOM05D004305 ORTHO05D005159 2.6e-08 64.3 417 26.1
Sed0021177 Sechium edule HOM05D004305 ORTHO05D005159 5.7e-08 63.2 54 63.0
Medtr4g094532 Medicago truncatula HOM05D004305 ORTHO05D005159 1.1e-06 58.9 434 24.4
unitig_32.g11679 Utricularia gibba HOM05D004305 ORTHO05D005159 2.4e-06 57.8 61 52.5
Zm00001eb217990 Zea mays HOM05D023203 ORTHO05D025996 4.1e-06 57.0 56 55.4


User provided reference genes

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