Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s2028 Capsella rubella HOM05D003718 ORTHO05D004402 0.0e+00 1293.5 692 100.0
AL7G32970 Arabidopsis lyrata HOM05D003718 ORTHO05D004402 0.0e+00 1201.0 692 92.6
AT4G21150 Arabidopsis thaliana HOM05D003718 ORTHO05D004402 0.0e+00 1181.4 692 91.3
CARHR227730 Cardamine hirsuta HOM05D003718 ORTHO05D004402 0.0e+00 1181.0 694 90.9
Thhalv10024580m.g Eutrema salsugineum HOM05D003718 ORTHO05D004402 0.0e+00 1162.9 692 89.6
Sp7g19230 Schrenkiella parvula HOM05D003718 ORTHO05D004402 0.0e+00 1156.0 692 89.2
BolC1t01458H Brassica oleracea HOM05D003718 ORTHO05D004402 0.0e+00 1146.0 692 89.0
BcaC09g51252 Brassica carinata HOM05D003718 ORTHO05D004402 0.0e+00 1144.8 692 88.9
BcaNung03839 Brassica carinata HOM05D003718 ORTHO05D004402 0.0e+00 1113.6 692 86.7
BraA03t14340Z Brassica rapa HOM05D003718 ORTHO05D004402 0.0e+00 1112.1 708 85.9
BraA01t01195Z Brassica rapa HOM05D003718 ORTHO05D004402 0.0e+00 1090.1 654 89.3
C01p15100 Brassica napus HOM05D003718 ORTHO05D004402 0.0e+00 1085.1 689 85.3
A01p12510 Brassica napus HOM05D003718 ORTHO05D004402 0.0e+00 1083.2 690 85.2
C07p51100 Brassica napus HOM05D003718 ORTHO05D004402 2.2e-307 1058.5 662 86.3
BolC7t45610H Brassica oleracea HOM05D003718 ORTHO05D004402 2.2e-307 1058.5 662 86.3
A03p52670 Brassica napus HOM05D003718 ORTHO05D004402 6.3e-307 1057.0 661 86.5
THA.LOC104806254 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 3.3e-295 1018.1 692 78.2
THA.LOC104812416 Tarenaya hassleriana HOM05D003718 ORTHO05D004402 2.9e-291 1005.0 686 78.6
Aa31LG6G3160 Aethionema arabicum HOM05D003718 ORTHO05D004402 2.0e-289 998.8 661 81.5
BolC3t20629H Brassica oleracea HOM05D003718 ORTHO05D004402 2.5e-287 991.9 734 77.0
C03p83480 Brassica napus HOM05D003718 ORTHO05D004402 2.8e-278 961.8 743 74.7
Atru.chr5.1725 Acer truncatum HOM05D003718 ORTHO05D004402 1.6e-262 909.4 693 68.8
Cfa013046 Carpinus fangiana HOM05D003718 ORTHO05D004402 4.9e-259 897.9 693 67.2
CANSAT01G0671 Cannabis sativa HOM05D003718 ORTHO05D004402 5.4e-258 894.4 685 68.9
Thecc.01G255900 Theobroma cacao HOM05D003718 ORTHO05D004402 1.9e-255 885.9 693 66.5
CiPaw.03G266000 Carya illinoinensis HOM05D003718 ORTHO05D004402 2.5e-255 885.6 693 66.2
Gohir.D07G156100 Gossypium hirsutum HOM05D003718 ORTHO05D004402 7.3e-255 884.0 686 67.3
Duzib133G1085 Durio zibethinus HOM05D003718 ORTHO05D004402 2.1e-254 882.5 693 66.5
Gorai.001G179000 Gossypium raimondii HOM05D003718 ORTHO05D004402 3.6e-254 881.7 686 67.1
Ciclev10019124m.g Citrus clementina HOM05D003718 ORTHO05D004402 4.8e-254 881.3 693 66.5
CiPaw.04G187700 Carya illinoinensis HOM05D003718 ORTHO05D004402 6.2e-254 880.9 686 67.1
Dinv34637 Davidia involucrata HOM05D003718 ORTHO05D004402 1.1e-253 880.2 687 65.9
TWI75G1389 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 1.4e-253 879.8 695 67.2
Duzib211G0290 Durio zibethinus HOM05D003718 ORTHO05D004402 3.1e-253 878.6 693 65.8
Duzib138G1036 Durio zibethinus HOM05D003718 ORTHO05D004402 5.3e-253 877.9 686 66.5
Gohir.A07G149800 Gossypium hirsutum HOM05D003718 ORTHO05D004402 9.0e-253 877.1 686 66.9
QL09p039591 Quercus lobata HOM05D003718 ORTHO05D004402 9.9e-252 873.6 705 65.0
Prupe.8G221600 Prunus persica HOM05D003718 ORTHO05D004402 8.4e-251 870.5 686 67.1
TWI12G1081 Tripterygium wilfordii HOM05D003718 ORTHO05D004402 8.4e-251 870.5 687 66.8
CSS0049010 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 1.9e-250 869.4 686 66.3
Manes.12G033700 Manihot esculenta HOM05D003718 ORTHO05D004402 4.2e-250 868.2 698 66.3
Manes.13G035300 Manihot esculenta HOM05D003718 ORTHO05D004402 9.3e-250 867.1 698 65.6
CSS0040480 Camellia sinensis var. sinensis HOM05D003718 ORTHO05D004402 6.0e-249 864.4 688 66.1
MD05G1194900 Malus domestica HOM05D003718 ORTHO05D004402 7.9e-249 864.0 692 66.8
Hma1.2p1_0273F.1_g109540 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 1.5e-247 859.8 691 65.3
Potri.005G226100 Populus trichocarpa HOM05D003718 ORTHO05D004402 1.9e-247 859.4 689 65.3
Potri.002G036600 Populus trichocarpa HOM05D003718 ORTHO05D004402 2.5e-247 859.0 696 65.5
GSVIVG01028357001 Vitis vinifera HOM05D003718 ORTHO05D004402 2.5e-247 859.0 689 66.0
Actinidia07305 Actinidia chinensis HOM05D003718 ORTHO05D004402 4.3e-247 858.2 686 65.3
MD10G1181500 Malus domestica HOM05D003718 ORTHO05D004402 2.1e-246 855.9 701 66.0
CsaV3_1G015830 Cucumis sativus L. HOM05D003718 ORTHO05D004402 1.4e-245 853.2 693 64.6
Eucgr.K03255 Eucalyptus grandis HOM05D003718 ORTHO05D004402 3.4e-244 848.6 690 64.9
Sabra05G0174600 Salix brachista HOM05D003718 ORTHO05D004402 4.5e-244 848.2 719 63.0
Lalb_Chr21g0313961 Lupinus albus HOM05D003718 ORTHO05D004402 9.9e-244 847.0 688 65.6
TAR633G0796 Trochodendron aralioides HOM05D003718 ORTHO05D004402 9.9e-244 847.0 689 64.9
RcHm_v2.0_Chr6g0287811 Rosa chinensis HOM05D003718 ORTHO05D004402 1.1e-242 843.6 683 66.5
FvH4_2g21250 Fragaria vesca HOM05D003718 ORTHO05D004402 7.9e-241 837.4 683 65.9
MELO3C025537.2 Cucumis melo HOM05D003718 ORTHO05D004402 1.8e-240 836.3 693 62.9
Glyma.03G164400 Glycine max HOM05D003718 ORTHO05D004402 6.7e-240 834.3 685 65.0
Gohir.D11G137575 Gossypium hirsutum HOM05D003718 ORTHO05D004402 4.3e-239 831.6 693 63.9
Lj5g0026512 Lotus japonicus HOM05D003718 ORTHO05D004402 1.6e-238 829.7 690 64.6
TAR362G0778 Trochodendron aralioides HOM05D003718 ORTHO05D004402 2.1e-238 829.3 691 64.0
Gorai.007G147600 Gossypium raimondii HOM05D003718 ORTHO05D004402 3.7e-238 828.6 693 63.6
FAN15G3248 Fragaria x ananassa HOM05D003718 ORTHO05D004402 8.1e-238 827.4 704 63.9
Phvul.001G162000 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 1.1e-237 827.0 685 63.9
Sed0001928 Sechium edule HOM05D003718 ORTHO05D004402 6.9e-237 824.3 693 61.8
Glyma.19G165800 Glycine max HOM05D003718 ORTHO05D004402 9.0e-237 823.9 693 63.5
FAN24G2691 Fragaria x ananassa HOM05D003718 ORTHO05D004402 2.0e-236 822.8 704 63.9
Sabra02G0029600 Salix brachista HOM05D003718 ORTHO05D004402 2.0e-236 822.8 728 62.1
Gohir.A11G131600 Gossypium hirsutum HOM05D003718 ORTHO05D004402 3.4e-236 822.0 693 63.8
VMungo1383G2169 Vigna mungo HOM05D003718 ORTHO05D004402 3.2e-234 815.5 686 63.6
Lalb_Chr02g0152551 Lupinus albus HOM05D003718 ORTHO05D004402 4.2e-234 815.1 684 63.7
Psat6g054080 Pisum sativum HOM05D003718 ORTHO05D004402 1.2e-233 813.5 689 63.1
Migut.D00439 Erythranthe guttata HOM05D003718 ORTHO05D004402 7.9e-233 810.8 689 62.0
Nn1g02814 Nelumbo nucifera HOM05D003718 ORTHO05D004402 7.9e-233 810.8 683 62.4
PGR031G0689 Punica granatum HOM05D003718 ORTHO05D004402 7.9e-233 810.8 676 61.8
Ca_09672_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 1.0e-232 810.4 691 63.4
FAN27G0576 Fragaria x ananassa HOM05D003718 ORTHO05D004402 3.0e-232 808.9 737 61.1
Medtr1g069780 Medicago truncatula HOM05D003718 ORTHO05D004402 5.7e-231 804.7 693 62.2
MSTRG.21485 Avicennia marina HOM05D003718 ORTHO05D004402 2.1e-230 802.7 694 61.8
BcaC01g00710 Brassica carinata HOM05D003718 ORTHO05D004402 2.1e-230 802.7 547 81.2
vmacro14814 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 2.1e-230 802.7 646 65.3
Sopen07g005600 Solanum pennellii HOM05D003718 ORTHO05D004402 3.7e-230 802.0 691 60.8
Sopen05g027610 Solanum pennellii HOM05D003718 ORTHO05D004402 1.1e-229 800.4 688 61.6
Aqoxy1G01842 Aquilegia oxysepala HOM05D003718 ORTHO05D004402 1.4e-229 800.0 680 60.3
AUR62013766 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.4e-229 800.0 678 62.2
Peaxi162Scf00320g00717 Petunia axillaris HOM05D003718 ORTHO05D004402 1.8e-229 799.7 691 60.2
Glyma.10G038000 Glycine max HOM05D003718 ORTHO05D004402 2.4e-229 799.3 663 64.4
Cc01_g18200 Coffea canephora HOM05D003718 ORTHO05D004402 2.0e-228 796.2 691 60.8
Phvul.007G191800 Phaseolus vulgaris HOM05D003718 ORTHO05D004402 1.3e-227 793.5 687 62.3
Solyc05g046330.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 1.3e-227 793.5 688 61.0
arahy.Tifrunner.gnm1.ann1.FU7SP6 Arachis hypogaea HOM05D003718 ORTHO05D004402 3.8e-227 792.0 698 61.0
CAN.G106.18 Capsicum annuum HOM05D003718 ORTHO05D004402 8.4e-227 790.8 689 60.8
arahy.Tifrunner.gnm1.ann1.QXN52H Arachis hypogaea HOM05D003718 ORTHO05D004402 2.5e-226 789.3 698 60.9
Nn3g19693 Nelumbo nucifera HOM05D003718 ORTHO05D004402 2.5e-226 789.3 688 61.0
SalBow4G0483 Salvia bowleyana HOM05D003718 ORTHO05D004402 3.2e-226 788.9 708 60.6
ECA236G3831 Erigeron canadensis HOM05D003718 ORTHO05D004402 1.2e-225 786.9 689 60.2
TPR.G5874 Trifolium pratense HOM05D003718 ORTHO05D004402 1.5e-223 780.0 646 64.4
Oeu052043.2 Olea europaea HOM05D003718 ORTHO05D004402 1.9e-223 779.6 809 54.4
DCAR_000921 Daucus carota HOM05D003718 ORTHO05D004402 6.3e-222 774.6 689 59.5
ClCG03G002590 Citrullus lanatus HOM05D003718 ORTHO05D004402 1.4e-221 773.5 693 59.9
CAN.G54.7 Capsicum annuum HOM05D003718 ORTHO05D004402 4.1e-221 771.9 691 58.6
CDE07G1087 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 5.0e-219 765.0 686 58.5
VMungo0720G0687 Vigna mungo HOM05D003718 ORTHO05D004402 6.5e-219 764.6 668 61.7
Solyc07g014700.4 Solanum lycopersicum HOM05D003718 ORTHO05D004402 8.5e-219 764.2 645 61.7
Lsat_1_v5_gn_8_92540 Lactuca sativa HOM05D003718 ORTHO05D004402 1.9e-218 763.1 668 59.9
arahy.Tifrunner.gnm1.ann1.EWE7BX Arachis hypogaea HOM05D003718 ORTHO05D004402 1.2e-217 760.4 723 57.1
PSO210G5136 Papaver somniferum HOM05D003718 ORTHO05D004402 7.9e-217 757.7 685 59.1
arahy.Tifrunner.gnm1.ann1.B1YDGW Arachis hypogaea HOM05D003718 ORTHO05D004402 1.5e-215 753.4 711 57.8
Nitab4.5_0001572g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 2.0e-215 753.1 691 57.7
ATR0736G006 Amborella trichopoda HOM05D003718 ORTHO05D004402 2.5e-215 752.7 645 60.8
PSO832G2930 Papaver somniferum HOM05D003718 ORTHO05D004402 3.3e-215 752.3 685 59.1
HanXRQChr04g0110491 Helianthus annuus HOM05D003718 ORTHO05D004402 5.7e-215 751.5 645 61.2
Rhsim01G0262400 Rhododendron simsii HOM05D003718 ORTHO05D004402 4.8e-214 748.4 608 65.1
Zm00001eb365020 Zea mays HOM05D003718 ORTHO05D004402 6.3e-214 748.0 687 58.2
Nitab4.5_0000413g0180 Nicotiana tabacum HOM05D003718 ORTHO05D004402 1.8e-213 746.5 691 57.7
CDE04G2599 Ceratophyllum demersum HOM05D003718 ORTHO05D004402 4.1e-213 745.3 686 57.6
Os01g0911200 Oryza sativa ssp. japonica HOM05D003718 ORTHO05D004402 3.4e-212 742.3 698 57.3
Hund17111 Selenicereus undatus HOM05D003718 ORTHO05D004402 4.5e-212 741.9 664 59.2
EL10Ac1g00739 Beta vulgaris HOM05D003718 ORTHO05D004402 5.9e-212 741.5 711 57.2
SGA_v2.0_scaffold138G35211 Striga asiatica HOM05D003718 ORTHO05D004402 2.2e-211 739.6 796 53.4
Zm00001eb143710 Zea mays HOM05D003718 ORTHO05D004402 8.5e-211 737.6 688 56.7
COL.COLO4_04023 Corchorus olitorius HOM05D003718 ORTHO05D004402 3.2e-210 735.7 626 62.3
SGA_v2.0_scaffold1G00624 Striga asiatica HOM05D003718 ORTHO05D004402 3.3e-207 725.7 690 58.6
Rhsim13G0036100 Rhododendron simsii HOM05D003718 ORTHO05D004402 3.1e-205 719.2 609 62.7
Psat3g056400 Pisum sativum HOM05D003718 ORTHO05D004402 7.2e-202 708.0 693 56.9
Sc02g0003190 Simmondsia chinensis HOM05D003718 ORTHO05D004402 1.2e-201 707.2 618 61.3
Lsat_1_v5_gn_5_182920 Lactuca sativa HOM05D003718 ORTHO05D004402 1.6e-201 706.8 689 56.6
TPR.G9204 Trifolium pratense HOM05D003718 ORTHO05D004402 2.1e-201 706.4 706 55.5
AUR62023389 Chenopodium quinoa HOM05D003718 ORTHO05D004402 1.1e-199 700.7 678 57.1
Lj1C68G8 Lonicera japonica HOM05D003718 ORTHO05D004402 1.5e-199 700.3 642 58.1
HPP92_000351 Vanilla planifolia HOM05D003718 ORTHO05D004402 3.2e-194 682.6 695 53.4
unitig_22.g5287 Utricularia gibba HOM05D003718 ORTHO05D004402 5.7e-191 671.8 710 52.7
Peaxi162Scf00906g00225 Petunia axillaris HOM05D003718 ORTHO05D004402 1.7e-190 670.2 670 55.5
Ca_08683_v3 Cicer arietinum L. HOM05D003718 ORTHO05D004402 4.8e-190 668.7 696 55.3
unitig_8.g3735 Utricularia gibba HOM05D003718 ORTHO05D004402 4.9e-174 615.5 652 52.8
Nitab4.5_0005411g0050 Nicotiana tabacum HOM05D003718 ORTHO05D004402 5.4e-173 612.1 647 53.2
Ah.05g177770 Amaranthus hybridus HOM05D003718 ORTHO05D004402 1.9e-165 587.0 533 58.5
Cpa.g.sc20.44 Carica papaya HOM05D003718 ORTHO05D004402 6.6e-163 578.6 694 50.6
Nitab4.5_0005095g0020 Nicotiana tabacum HOM05D003718 ORTHO05D004402 2.4e-141 506.9 503 54.7
A08p15230 Brassica napus HOM05D003718 ORTHO05D001664 2.5e-138 496.9 589 55.2
Mapoly0028s0115 Marchantia polymorpha HOM05D003718 ORTHO05D004402 3.9e-131 473.0 695 42.2
Actinidia37517 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.6e-129 467.6 589 48.9
CsaV3_UNG055470 Cucumis sativus L. HOM05D003718 ORTHO05D004402 2.3e-123 447.2 441 56.7
AUR62043414 Chenopodium quinoa HOM05D003718 ORTHO05D004402 4.6e-116 422.9 352 63.9
Psat0ss9065g0080 Pisum sativum HOM05D003718 ORTHO05D004402 2.4e-104 384.0 430 52.3
SEGI_27157 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 5.9e-103 379.4 361 56.0
Haze_21407 Corylus avellana HOM05D003718 ORTHO05D004402 1.4e-93 348.2 308 60.1
FAN20G1425 Fragaria x ananassa HOM05D003718 ORTHO05D004402 1.4e-93 348.2 319 59.6
vmacro02673 Vaccinium macrocarpon HOM05D003718 ORTHO05D004402 5.5e-93 346.3 335 56.1
HanXRQChr11g0336771 Helianthus annuus HOM05D003718 ORTHO05D004402 6.7e-91 339.3 379 51.5
EL10Ac1g02094 Beta vulgaris HOM05D003718 ORTHO05D004402 5.0e-86 323.2 307 53.7
AagrBONN_evm.TU.Sc2ySwM_340.234 Anthoceros agrestis HOM05D003718 ORTHO05D004402 2.9e-78 297.4 425 44.7
CBR_g32152 Chara braunii HOM05D003718 ORTHO05D004402 1.0e-70 272.3 689 33.1
Pp3c7_6480 Physcomitrium patens HOM05D003718 ORTHO05D004402 6.8e-59 233.0 385 41.3
Hma1.2p1_0576F.1_g181950 Hydrangea macrophylla HOM05D003718 ORTHO05D004402 6.6e-54 216.5 309 46.3
Psat7g093680 Pisum sativum HOM05D003718 ORTHO05D004402 7.5e-50 203.0 315 41.9
Actinidia09538 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.7e-49 200.7 156 66.7
HPP92_000418 Vanilla planifolia HOM05D003718 ORTHO05D004402 2.4e-48 198.0 656 28.0
Actinidia09536 Actinidia chinensis HOM05D003718 ORTHO05D004402 3.2e-48 197.6 263 47.5
SEGI_31370 Sequoiadendron giganteum HOM05D003718 ORTHO05D004402 6.6e-46 189.9 221 48.9
FAN27G1677 Fragaria x ananassa HOM05D003718 ORTHO05D004402 8.1e-44 183.0 187 52.4
CsaV3_UNG055460 Cucumis sativus L. HOM05D003718 ORTHO05D004402 5.1e-38 163.7 199 48.7
SHI09762 Sapria himalayana HOM05D003718 ORTHO05D004402 4.0e-35 154.1 199 44.7
SMO367G0218 Selaginella moellendorffii HOM05D003718 ORTHO05D004402 1.5e-29 135.6 138 49.3
arahy.Tifrunner.gnm1.ann1.S1G2KX Arachis hypogaea HOM05D003718 ORTHO05D004402 3.3e-29 134.4 118 59.3
Psat6g086960 Pisum sativum HOM05D003718 ORTHO05D004402 7.3e-29 133.3 96 69.8
Actinidia09537 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.2e-26 125.9 162 45.1
Actinidia30158 Actinidia chinensis HOM05D003718 ORTHO05D004402 1.6e-23 115.5 103 57.3
arahy.Tifrunner.gnm1.ann1.6B4W14 Arachis hypogaea HOM05D003718 ORTHO05D004402 1.6e-23 115.5 79 68.4
arahy.Tifrunner.gnm1.ann1.N0B60F Arachis hypogaea HOM05D003718 ORTHO05D004402 1.0e-22 112.8 78 67.9
arahy.Tifrunner.gnm1.ann1.EX0EXI Arachis hypogaea HOM05D004703 ORTHO05D005801 1.7e-22 112.1 99 58.6
Actinidia25800 Actinidia chinensis HOM05D003718 ORTHO05D004402 2.1e-20 105.1 196 37.2
Cre08.g368450 Chlamydomonas reinhardtii HOM05D003718 ORTHO05D004402 1.1e-16 92.8 284 31.0
Lsat_1_v5_gn_3_107020 Lactuca sativa HOM05D003718 ORTHO05D004402 4.2e-16 90.9 105 48.6
Lsat_1_v5_gn_4_881 Lactuca sativa HOM05D003718 ORTHO05D004402 2.1e-15 88.6 153 35.9
Psat6g087000 Pisum sativum HOM05D003718 ORTHO05D004402 7.9e-15 86.7 67 65.7
Actinidia30157 Actinidia chinensis HOM05D003718 ORTHO05D057597 2.8e-12 78.2 86 51.2
arahy.Tifrunner.gnm1.ann1.LM6F6Z Arachis hypogaea HOM05D003718 ORTHO05D004402 2.4e-11 75.1 115 38.3
Lsat_1_v5_gn_9_27880 Lactuca sativa HOM05D003718 ORTHO05D004402 4.9e-09 67.4 177 32.8
Gohir.A01G185580 Gossypium hirsutum HOM05D003718 ORTHO05D000087 2.4e-08 65.1 46 67.4
Actinidia25801 Actinidia chinensis HOM05D003718 ORTHO05D004402 7.1e-08 63.5 118 37.3
C03p03420 Brassica napus HOM05D029148 ORTHO05D032464 9.3e-08 63.2 37 83.8
BolC3t12883H Brassica oleracea HOM05D029148 ORTHO05D032464 9.3e-08 63.2 37 83.8


User provided reference genes

Program Settings