Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s2021 Capsella rubella HOM05D004835 ORTHO05D006046 5.6e-223 777.3 404 100.0
AL7G32900 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 3.1e-205 718.4 404 92.6
AT4G21210 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 1.0e-203 713.4 404 91.6
CARHR227800 Cardamine hirsuta HOM05D004835 ORTHO05D006046 6.1e-193 677.6 404 87.9
Thhalv10025354m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 1.2e-188 663.3 406 86.0
Sp7g19300 Schrenkiella parvula HOM05D004835 ORTHO05D006046 5.5e-186 654.4 404 86.4
A01p12580 Brassica napus HOM05D004835 ORTHO05D006046 9.1e-181 637.1 404 83.7
BcaNung03833 Brassica carinata HOM05D004835 ORTHO05D006046 1.2e-180 636.7 404 83.9
BolC1t01464H Brassica oleracea HOM05D004835 ORTHO05D006046 5.9e-180 634.4 404 83.4
BraA01t01201Z Brassica rapa HOM05D004835 ORTHO05D006046 1.7e-179 632.9 404 83.2
C01p15150 Brassica napus HOM05D004835 ORTHO05D006046 2.2e-179 632.5 404 83.4
BcaC09g51244 Brassica carinata HOM05D004835 ORTHO05D006046 1.1e-178 630.2 404 83.2
Aa31LG6G3230 Aethionema arabicum HOM05D004835 ORTHO05D006046 4.7e-169 598.2 409 80.0
THA.LOC104812524 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 2.3e-152 542.7 407 71.3
TAR626G1121 Trochodendron aralioides HOM05D004835 ORTHO05D006046 1.1e-128 464.2 401 62.6
CiPaw.10G068200 Carya illinoinensis HOM05D004835 ORTHO05D006046 3.1e-128 462.6 390 63.6
QL05p075217 Quercus lobata HOM05D004835 ORTHO05D006046 9.0e-128 461.1 396 61.4
Atru.chr10.2145 Acer truncatum HOM05D004835 ORTHO05D006046 5.8e-127 458.4 393 62.6
Gohir.A06G145700 Gossypium hirsutum HOM05D004835 ORTHO05D006046 5.8e-127 458.4 396 61.6
Sabra04G0012600 Salix brachista HOM05D004835 ORTHO05D006046 7.6e-127 458.0 396 62.1
Gorai.010G176900 Gossypium raimondii HOM05D004835 ORTHO05D006046 1.3e-126 457.2 396 61.4
Lj1A1224G37 Lonicera japonica HOM05D004835 ORTHO05D006046 1.1e-125 454.1 397 62.0
Thecc.06G213800 Theobroma cacao HOM05D004835 ORTHO05D006046 2.4e-125 453.0 382 62.3
Prupe.4G026400 Prunus persica HOM05D004835 ORTHO05D006046 9.3e-125 451.1 374 62.8
vmacro03709 Vaccinium macrocarpon HOM05D004835 ORTHO05D006046 1.2e-124 450.7 399 60.9
Potri.004G022900 Populus trichocarpa HOM05D004835 ORTHO05D006046 1.6e-124 450.3 399 61.9
Cpa.g.sc198.3 Carica papaya HOM05D004835 ORTHO05D006046 3.5e-124 449.1 397 59.4
Actinidia26949 Actinidia chinensis HOM05D004835 ORTHO05D006046 4.6e-124 448.7 392 60.7
Hma1.2p1_0091F.1_g046150 Hydrangea macrophylla HOM05D004835 ORTHO05D006046 6.0e-124 448.4 396 61.4
arahy.Tifrunner.gnm1.ann1.06HJR7 Arachis hypogaea HOM05D004835 ORTHO05D006046 1.0e-123 447.6 360 62.8
COL.COLO4_31722 Corchorus olitorius HOM05D004835 ORTHO05D006046 1.3e-123 447.2 388 61.1
PGR004G0955 Punica granatum HOM05D004835 ORTHO05D006046 1.3e-123 447.2 389 60.7
MD05G1340900 Malus domestica HOM05D004835 ORTHO05D006046 1.7e-123 446.8 378 61.9
Nn1g07024 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.3e-123 446.4 372 63.4
Rhsim13G0157800 Rhododendron simsii HOM05D004835 ORTHO05D006046 3.0e-123 446.0 409 58.7
Lj5g0006944 Lotus japonicus HOM05D004835 ORTHO05D006046 5.1e-123 445.3 391 58.3
Lalb_Chr02g0144591 Lupinus albus HOM05D004835 ORTHO05D006046 5.1e-123 445.3 358 63.4
Cfa000278 Carpinus fangiana HOM05D004835 ORTHO05D006046 8.7e-123 444.5 417 58.5
arahy.Tifrunner.gnm1.ann1.P6UBAG Arachis hypogaea HOM05D004835 ORTHO05D006046 1.9e-122 443.4 360 62.5
Glyma.10G252300 Glycine max HOM05D004835 ORTHO05D006046 1.9e-122 443.4 369 63.1
Eucgr.D00815 Eucalyptus grandis HOM05D004835 ORTHO05D006046 2.5e-122 443.0 416 58.7
FAN25G1333 Fragaria x ananassa HOM05D004835 ORTHO05D006046 2.5e-122 443.0 366 63.7
FvH4_3g02680 Fragaria vesca HOM05D004835 ORTHO05D006046 4.3e-122 442.2 366 63.7
Glyma.20G141100 Glycine max HOM05D004835 ORTHO05D006046 7.3e-122 441.4 369 62.6
Phvul.007G051900 Phaseolus vulgaris HOM05D004835 ORTHO05D006046 1.3e-121 440.7 368 64.1
CsaV3_1G011070 Cucumis sativus L. HOM05D004835 ORTHO05D006046 2.8e-121 439.5 382 61.3
DCAR_008123 Daucus carota HOM05D004835 ORTHO05D006046 2.8e-121 439.5 356 62.6
PSO675G0743 Papaver somniferum HOM05D004835 ORTHO05D006046 2.8e-121 439.5 402 59.0
RcHm_v2.0_Chr5g0004011 Rosa chinensis HOM05D004835 ORTHO05D006046 2.8e-121 439.5 367 64.0
Haze_06733 Corylus avellana HOM05D004835 ORTHO05D006046 3.6e-121 439.1 374 61.8
ClCG03G004990 Citrullus lanatus HOM05D004835 ORTHO05D006046 4.8e-121 438.7 386 60.1
MBI02_g10099_MAGBIO Magnolia biondii HOM05D004835 ORTHO05D006046 4.8e-121 438.7 376 62.8
MELO3C002484.2 Cucumis melo HOM05D004835 ORTHO05D006046 8.1e-121 438.0 382 60.2
Oeu030985.2 Olea europaea HOM05D004835 ORTHO05D006046 8.1e-121 438.0 434 56.9
Haze_06737 Corylus avellana HOM05D004835 ORTHO05D006046 1.4e-120 437.2 417 57.3
Manes.16G012700 Manihot esculenta HOM05D004835 ORTHO05D006046 1.4e-120 437.2 400 59.8
VMungo0720G3178 Vigna mungo HOM05D004835 ORTHO05D006046 1.8e-120 436.8 358 62.6
Ca_10985_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.1e-120 436.0 387 59.7
Ca_11005_v3 Cicer arietinum L. HOM05D004835 ORTHO05D006046 3.1e-120 436.0 387 59.7
CSS0008490 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 5.3e-120 435.3 399 58.9
Hund21377 Selenicereus undatus HOM05D004835 ORTHO05D006046 6.9e-120 434.9 360 62.8
Ciclev10015558m.g Citrus clementina HOM05D004835 ORTHO05D006046 1.2e-119 434.1 392 59.7
Nitab4.5_0003738g0050 Nicotiana tabacum HOM05D004835 ORTHO05D006046 1.5e-119 433.7 392 59.9
Sopen10g001360 Solanum pennellii HOM05D004835 ORTHO05D006046 1.5e-119 433.7 393 59.8
TWI63G0472 Tripterygium wilfordii HOM05D004835 ORTHO05D006046 2.0e-119 433.3 372 61.8
Solyc10g005370.3 Solanum lycopersicum HOM05D004835 ORTHO05D006046 2.6e-119 433.0 393 59.8
Medtr1g105545 Medicago truncatula HOM05D004835 ORTHO05D006046 7.6e-119 431.4 370 61.9
Gohir.D06G151600 Gossypium hirsutum HOM05D004835 ORTHO05D006046 1.3e-118 430.6 396 59.3
Lsat_1_v5_gn_7_16981 Lactuca sativa HOM05D004835 ORTHO05D006046 1.7e-118 430.3 368 62.5
Nitab4.5_0006795g0010 Nicotiana tabacum HOM05D004835 ORTHO05D006046 2.2e-118 429.9 392 59.4
ATR0762G046 Amborella trichopoda HOM05D004835 ORTHO05D006046 2.9e-118 429.5 372 61.0
PGSC0003DMG400011280 Solanum tuberosum HOM05D004835 ORTHO05D006046 4.9e-118 428.7 370 60.8
Aqoxy4G01996 Aquilegia oxysepala HOM05D004835 ORTHO05D006046 1.4e-117 427.2 374 62.0
ECA236G4143 Erigeron canadensis HOM05D004835 ORTHO05D006046 7.1e-117 424.9 399 58.6
Psat6g210360 Pisum sativum HOM05D004835 ORTHO05D006046 7.1e-117 424.9 383 59.5
THA.LOC104821035 Tarenaya hassleriana HOM05D004835 ORTHO05D006046 7.1e-117 424.9 406 58.6
CANSAT56G3094 Cannabis sativa HOM05D004835 ORTHO05D006046 1.2e-116 424.1 407 58.0
AUR62022016 Chenopodium quinoa HOM05D004835 ORTHO05D006046 2.7e-116 422.9 375 60.0
EL10Ac8g19899 Beta vulgaris HOM05D004835 ORTHO05D006046 3.5e-116 422.5 367 59.4
HanXRQChr05g0130051 Helianthus annuus HOM05D004835 ORTHO05D006046 4.6e-116 422.2 398 57.5
Sed0001374 Sechium edule HOM05D004835 ORTHO05D006046 4.6e-116 422.2 417 56.1
GSVIVG01012626001 Vitis vinifera HOM05D004835 ORTHO05D006046 3.0e-115 419.5 287 71.8
Ah.09g235350 Amaranthus hybridus HOM05D004835 ORTHO05D006046 5.1e-115 418.7 390 57.9
Dinv17835 Davidia involucrata HOM05D004835 ORTHO05D006046 8.7e-115 417.9 287 71.8
PSO541G2305 Papaver somniferum HOM05D004835 ORTHO05D006046 7.4e-114 414.8 402 57.5
CDE05G0674 Ceratophyllum demersum HOM05D004835 ORTHO05D006046 9.6e-114 414.5 368 58.4
SGA_v2.0_scaffold49G18268 Striga asiatica HOM05D004835 ORTHO05D006046 9.6e-114 414.5 340 62.4
CAN.G105.1 Capsicum annuum HOM05D004835 ORTHO05D006046 2.8e-113 412.9 399 57.6
Cc00_g17920 Coffea canephora HOM05D004835 ORTHO05D006046 8.1e-113 411.4 287 70.4
Migut.H01551 Erythranthe guttata HOM05D004835 ORTHO05D006046 1.4e-112 410.6 403 58.3
Duzib235G1297 Durio zibethinus HOM05D004835 ORTHO05D006046 4.0e-112 409.1 391 58.1
Sc05g0008870 Simmondsia chinensis HOM05D004835 ORTHO05D006046 9.0e-112 407.9 363 59.2
MSTRG.13160 Avicennia marina HOM05D004835 ORTHO05D006046 1.5e-111 407.1 369 58.5
Thhalv10020923m.g Eutrema salsugineum HOM05D004835 ORTHO05D006046 4.5e-111 405.6 394 57.6
Os07g0530600 Oryza sativa ssp. japonica HOM05D004835 ORTHO05D006046 1.3e-110 404.1 361 60.4
Sp3g00900 Schrenkiella parvula HOM05D004835 ORTHO05D006046 2.9e-110 402.9 387 56.6
HPP92_010092 Vanilla planifolia HOM05D004835 ORTHO05D006046 1.4e-109 400.6 369 59.1
SalBow1G4699 Salvia bowleyana HOM05D004835 ORTHO05D006046 1.2e-108 397.5 341 60.7
Zm00001eb323140 Zea mays HOM05D004835 ORTHO05D006046 2.1e-108 396.7 357 57.1
AT3G01200 Arabidopsis thaliana HOM05D004835 ORTHO05D006046 2.3e-107 393.3 369 57.5
MSTRG.14649 Avicennia marina HOM05D004835 ORTHO05D006046 3.0e-107 392.9 399 53.6
BcaC05g30485 Brassica carinata HOM05D004835 ORTHO05D006046 3.0e-107 392.9 362 59.7
AL3G11040 Arabidopsis lyrata HOM05D004835 ORTHO05D006046 8.7e-107 391.3 391 55.8
Lsat_1_v5_gn_1_125320 Lactuca sativa HOM05D004835 ORTHO05D006046 1.1e-106 391.0 399 56.1
CARHR075840 Cardamine hirsuta HOM05D004835 ORTHO05D006046 1.3e-105 387.5 357 58.0
Carub.0003s0094 Capsella rubella HOM05D004835 ORTHO05D006046 1.6e-105 387.1 373 57.1
C09p75340 Brassica napus HOM05D004835 ORTHO05D006046 2.1e-105 386.7 389 57.1
BolC5t35125H Brassica oleracea HOM05D004835 ORTHO05D006046 2.1e-105 386.7 389 57.1
Pp3c11_19190 Physcomitrium patens HOM05D004835 ORTHO05D006046 3.7e-105 386.0 371 53.9
A05p44760 Brassica napus HOM05D004835 ORTHO05D006046 4.8e-105 385.6 389 56.8
BraA05t23181Z Brassica rapa HOM05D004835 ORTHO05D006046 4.8e-105 385.6 389 56.8
Zm00001eb106240 Zea mays HOM05D004835 ORTHO05D006046 6.2e-105 385.2 393 53.2
BraA01t04644Z Brassica rapa HOM05D004835 ORTHO05D006046 1.8e-104 383.6 398 55.5
ECA248G0073 Erigeron canadensis HOM05D004835 ORTHO05D006046 1.8e-104 383.6 364 57.1
BNapus_Darmor_BZH_scaffold_113p00010 Brassica napus HOM05D004835 ORTHO05D006046 3.1e-104 382.9 398 55.3
Cpa.g.sc198.4 Carica papaya HOM05D004835 ORTHO05D006046 3.1e-104 382.9 286 67.5
BcaC05g30395 Brassica carinata HOM05D004835 ORTHO05D006046 4.0e-104 382.5 389 56.6
BolC1t05939H Brassica oleracea HOM05D004835 ORTHO05D006046 5.3e-104 382.1 361 57.6
BNapus_Darmor_BZH_scaffold_97p00190 Brassica napus HOM05D004835 ORTHO05D006046 9.0e-104 381.3 398 55.3
Nn1g03640 Nelumbo nucifera HOM05D004835 ORTHO05D006046 2.0e-103 380.2 370 56.5
unitig_26.g9396 Utricularia gibba HOM05D004835 ORTHO05D006046 2.6e-103 379.8 407 52.8
unitig_749.g13624 Utricularia gibba HOM05D004835 ORTHO05D006046 2.6e-103 379.8 360 55.3
SMO147G0180 Selaginella moellendorffii HOM05D004835 ORTHO05D006046 5.8e-103 378.6 290 61.4
BcaC09g47670 Brassica carinata HOM05D004835 ORTHO05D006046 2.2e-102 376.7 354 57.6
Peaxi162Scf00678g00310 Petunia axillaris HOM05D004835 ORTHO05D006046 8.4e-102 374.8 360 57.2
HanXRQChr01g0002521 Helianthus annuus HOM05D004835 ORTHO05D006046 1.4e-101 374.0 358 56.4
BcaB04g21426 Brassica carinata HOM05D004835 ORTHO05D006046 5.5e-101 372.1 399 53.9
Mapoly0141s0024 Marchantia polymorpha HOM05D004835 ORTHO05D006046 9.3e-101 371.3 363 53.2
Hund23515 Selenicereus undatus HOM05D004835 ORTHO05D006046 2.7e-100 369.8 343 57.4
SEGI_26962 Sequoiadendron giganteum HOM05D004835 ORTHO05D006046 1.1e-98 364.4 283 63.3
Lj2A274G58 Lonicera japonica HOM05D004835 ORTHO05D006046 3.4e-95 352.8 359 54.3
FAN21G1397 Fragaria x ananassa HOM05D004835 ORTHO05D006046 3.0e-91 339.7 285 62.1
CSS0001434 Camellia sinensis var. sinensis HOM05D004835 ORTHO05D006046 4.1e-88 329.3 306 58.2
CBR_g38977 Chara braunii HOM05D004835 ORTHO05D006046 6.9e-88 328.6 400 47.2
TPR.G5518 Trifolium pratense HOM05D004835 ORTHO05D006046 1.3e-86 324.3 397 47.6
AagrBONN_evm.TU.Sc2ySwM_368.2632 Anthoceros agrestis HOM05D004835 ORTHO05D006046 7.2e-85 318.5 370 47.3
Aa31LG5G12420 Aethionema arabicum HOM05D004835 ORTHO05D006046 3.6e-84 316.2 251 64.5
HPP92_010083 Vanilla planifolia HOM05D004835 ORTHO05D006046 3.0e-83 313.2 250 62.4
Dinv20014 Davidia involucrata HOM05D004835 ORTHO05D006046 2.8e-65 253.4 195 65.1
Cre12.g514600 Chlamydomonas reinhardtii HOM05D004835 ORTHO05D006046 2.6e-58 230.3 298 40.9
MCO14G521 Micromonas commoda HOM05D004835 ORTHO05D006046 1.3e-54 218.0 406 37.4
BolC1t05935H Brassica oleracea HOM05D004835 ORTHO05D006046 1.2e-52 211.5 170 62.9
BNapus_Darmor_BZH_scaffold_97p00140 Brassica napus HOM05D004835 ORTHO05D006046 2.1e-52 210.7 155 67.1
TPR.G4570 Trifolium pratense HOM05D004835 ORTHO05D006046 1.7e-41 174.5 256 41.8
MD10G1314400 Malus domestica HOM05D004835 ORTHO05D006046 2.8e-28 130.6 249 36.1
BolC1t05929H Brassica oleracea HOM05D004835 ORTHO05D006046 2.4e-24 117.5 189 39.2
CANSAT64G1413 Cannabis sativa HOM05D004835 ORTHO05D006046 1.1e-21 108.6 174 40.2
Ca_29404_v3 Cicer arietinum L. HOM05D004835 ORTHO05D148401 1.2e-20 105.1 281 28.5
Actinidia05534 Actinidia chinensis HOM05D000018 ORTHO05D001766 1.1e-19 102.1 111 51.4
Aa31LG5G12410 Aethionema arabicum HOM05D004835 ORTHO05D038187 1.1e-16 92.0 145 44.1
BolC5t35131H Brassica oleracea HOM05D004835 ORTHO05D038187 7.1e-16 89.4 54 75.9
Dinv20013 Davidia involucrata HOM05D004835 ORTHO05D006046 3.5e-15 87.0 72 59.7
QL10p027838 Quercus lobata HOM05D004835 ORTHO05D337120 1.7e-09 68.2 101 40.6


User provided reference genes

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