Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s2020 Capsella rubella HOM05D004361 ORTHO05D004706 2.3e-103 379.0 205 100.0
AL7G32890 Arabidopsis lyrata HOM05D004361 ORTHO05D004706 3.1e-84 315.5 205 87.3
AT4G21215 Arabidopsis thaliana HOM05D004361 ORTHO05D004706 7.6e-83 310.8 205 85.9
Sp7g19310 Schrenkiella parvula HOM05D004361 ORTHO05D004706 1.1e-81 307.0 205 84.9
CARHR227810 Cardamine hirsuta HOM05D004361 ORTHO05D004706 2.1e-77 292.7 205 83.9
Thhalv10026295m.g Eutrema salsugineum HOM05D004361 ORTHO05D004706 2.1e-77 292.7 206 82.5
A01p12590 Brassica napus HOM05D004361 ORTHO05D004706 5.3e-76 288.1 205 80.5
BraA01t01202Z Brassica rapa HOM05D004361 ORTHO05D004706 5.3e-76 288.1 205 80.5
BcaC09g51243 Brassica carinata HOM05D004361 ORTHO05D004706 1.3e-74 283.5 205 79.5
BolC1t01465H Brassica oleracea HOM05D004361 ORTHO05D004706 6.4e-74 281.2 205 79.5
BcaNung03832 Brassica carinata HOM05D004361 ORTHO05D004706 4.2e-73 278.5 205 78.0
BcaC06g30659 Brassica carinata HOM05D004361 ORTHO05D004706 7.1e-73 277.7 201 78.6
C03p83440 Brassica napus HOM05D004361 ORTHO05D004706 2.1e-72 276.2 203 78.8
BolC3t20622H Brassica oleracea HOM05D004361 ORTHO05D004706 3.5e-72 275.4 203 78.8
A03p52710 Brassica napus HOM05D004361 ORTHO05D004706 1.3e-71 273.5 201 77.6
BcaNung00863 Brassica carinata HOM05D004361 ORTHO05D004706 1.5e-70 270.0 201 77.1
BolC7t45614H Brassica oleracea HOM05D004361 ORTHO05D004706 1.5e-70 270.0 201 77.1
C07p51140 Brassica napus HOM05D004361 ORTHO05D004706 3.3e-70 268.9 201 77.1
BraA03t14345Z Brassica rapa HOM05D004361 ORTHO05D004706 9.6e-70 267.3 201 76.6
BraA08t33498Z Brassica rapa HOM05D004361 ORTHO05D004706 5.3e-68 261.5 210 76.2
A08p15200 Brassica napus HOM05D004361 ORTHO05D004706 2.0e-67 259.6 211 73.9
C01p15160 Brassica napus HOM05D004361 ORTHO05D004706 1.0e-63 247.3 178 78.7
BcaB03g11696 Brassica carinata HOM05D004361 ORTHO05D004706 2.8e-61 239.2 181 75.7
BcaC01g00706 Brassica carinata HOM05D004361 ORTHO05D004706 6.3e-61 238.0 178 77.0
Aa31LG6G3240 Aethionema arabicum HOM05D004361 ORTHO05D004706 2.8e-53 212.6 207 63.8
THA.LOC104806260 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 2.7e-40 169.5 206 57.8
THA.LOC104812510 Tarenaya hassleriana HOM05D004361 ORTHO05D004706 6.7e-31 138.3 203 48.8
COL.COLO4_31721 Corchorus olitorius HOM05D004361 ORTHO05D004706 2.0e-22 110.2 201 43.8
Thecc.06G213600 Theobroma cacao HOM05D004361 ORTHO05D004706 4.4e-22 109.0 197 43.7
Potri.011G026900 Populus trichocarpa HOM05D004361 ORTHO05D004706 7.5e-22 108.2 198 44.4
Cfa000279 Carpinus fangiana HOM05D004361 ORTHO05D004706 3.1e-20 102.8 193 46.1
Manes.16G012800 Manihot esculenta HOM05D004361 ORTHO05D004706 1.2e-19 100.9 195 39.0
Sabra04G0012700 Salix brachista HOM05D004361 ORTHO05D004706 1.2e-19 100.9 184 44.0
Duzib235G0682 Durio zibethinus HOM05D004361 ORTHO05D004706 1.6e-19 100.5 205 43.4
Gohir.A06G145600 Gossypium hirsutum HOM05D004361 ORTHO05D004706 1.6e-19 100.5 194 43.3
MD10G1314300 Malus domestica HOM05D004361 ORTHO05D004706 2.7e-19 99.8 195 40.0
CAN.G569.44 Capsicum annuum HOM05D004361 ORTHO05D004706 3.5e-19 99.4 192 42.7
Haze_06732 Corylus avellana HOM05D004361 ORTHO05D004706 4.5e-19 99.0 192 44.3
Duzib192G0487 Durio zibethinus HOM05D004361 ORTHO05D004706 7.7e-19 98.2 204 43.6
RcHm_v2.0_Chr5g0004031 Rosa chinensis HOM05D004361 ORTHO05D004706 7.7e-19 98.2 194 41.8
TWI38G1626 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 7.7e-19 98.2 198 41.4
Glyma.10G252400 Glycine max HOM05D004361 ORTHO05D004706 1.0e-18 97.8 188 41.5
arahy.Tifrunner.gnm1.ann1.F31F99 Arachis hypogaea HOM05D004361 ORTHO05D004706 1.3e-18 97.4 205 39.0
Haze_06736 Corylus avellana HOM05D004361 ORTHO05D004706 2.3e-18 96.7 192 43.8
Glyma.20G141000 Glycine max HOM05D004361 ORTHO05D004706 2.9e-18 96.3 197 38.6
Gohir.A06G208100 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.9e-18 96.3 198 43.9
Prupe.4G026600 Prunus persica HOM05D004361 ORTHO05D004706 3.8e-18 95.9 193 40.4
QL05p075222 Quercus lobata HOM05D004361 ORTHO05D004706 5.0e-18 95.5 187 42.8
Cpa.g.sc198.2 Carica papaya HOM05D004361 ORTHO05D004706 6.5e-18 95.1 200 40.0
Potri.004G023000 Populus trichocarpa HOM05D004361 ORTHO05D004706 8.6e-18 94.7 182 41.8
CSS0034427 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 1.9e-17 93.6 206 41.7
MSTRG.15964 Avicennia marina HOM05D004361 ORTHO05D004706 2.5e-17 93.2 201 38.8
PGSC0003DMG400002067 Solanum tuberosum HOM05D004361 ORTHO05D004706 3.2e-17 92.8 208 41.3
CiPaw.09G086700 Carya illinoinensis HOM05D004361 ORTHO05D004706 4.2e-17 92.4 193 41.5
Dinv17836 Davidia involucrata HOM05D004361 ORTHO05D004706 4.2e-17 92.4 201 40.8
TWI38G0935 Tripterygium wilfordii HOM05D004361 ORTHO05D004706 4.2e-17 92.4 204 43.1
VMungo0720G0988 Vigna mungo HOM05D004361 ORTHO05D004706 4.2e-17 92.4 191 38.2
Actinidia14236 Actinidia chinensis HOM05D004361 ORTHO05D004706 7.2e-17 91.7 196 40.8
FAN21G0156 Fragaria x ananassa HOM05D004361 ORTHO05D004706 9.5e-17 91.3 198 39.9
Gorai.010G176700 Gossypium raimondii HOM05D004361 ORTHO05D004706 9.5e-17 91.3 195 43.1
Gorai.010G253100 Gossypium raimondii HOM05D004361 ORTHO05D004706 1.2e-16 90.9 206 41.7
Sed0011498 Sechium edule HOM05D004361 ORTHO05D004706 1.6e-16 90.5 210 41.0
FvH4_3g02690 Fragaria vesca HOM05D004361 ORTHO05D004706 2.1e-16 90.1 199 39.7
FAN25G3407 Fragaria x ananassa HOM05D004361 ORTHO05D004706 2.8e-16 89.7 198 38.9
Gohir.D06G213000 Gossypium hirsutum HOM05D004361 ORTHO05D004706 2.8e-16 89.7 198 42.4
MD05G1340800 Malus domestica HOM05D004361 ORTHO05D004706 2.8e-16 89.7 193 40.9
Peaxi162Scf00678g00313 Petunia axillaris HOM05D004361 ORTHO05D004706 2.8e-16 89.7 193 42.0
Actinidia05535 Actinidia chinensis HOM05D004361 ORTHO05D004706 6.1e-16 88.6 200 40.5
Gohir.D06G151500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 8.0e-16 88.2 195 42.6
SGA_v2.0_scaffold114G32021 Striga asiatica HOM05D004361 ORTHO05D004706 3.0e-15 86.3 178 43.3
CSS0045436 Camellia sinensis var. sinensis HOM05D004361 ORTHO05D004706 4.0e-15 85.9 208 38.9
Manes.17G034800 Manihot esculenta HOM05D004361 ORTHO05D004706 4.0e-15 85.9 194 39.7
Sc05g0008860 Simmondsia chinensis HOM05D004361 ORTHO05D004706 4.0e-15 85.9 199 37.7
Sopen02g024830 Solanum pennellii HOM05D004361 ORTHO05D004706 4.0e-15 85.9 186 40.3
Actinidia26950 Actinidia chinensis HOM05D004361 ORTHO05D004706 5.2e-15 85.5 183 38.3
GSVIVG01012625001 Vitis vinifera HOM05D004361 ORTHO05D004706 6.8e-15 85.1 192 42.2
Sabra11G0017100 Salix brachista HOM05D004361 ORTHO05D004706 8.8e-15 84.7 163 44.8
Solyc02g080110.3 Solanum lycopersicum HOM05D004361 ORTHO05D004706 8.8e-15 84.7 186 39.8
Eucgr.D00816 Eucalyptus grandis HOM05D004361 ORTHO05D004706 1.5e-14 84.0 188 39.9
CANSAT56G2280 Cannabis sativa HOM05D004361 ORTHO05D004706 3.4e-14 82.8 198 42.4
Lalb_Chr21g0307851 Lupinus albus HOM05D004361 ORTHO05D004706 4.4e-14 82.4 203 36.9
Hma1.2p1_0091F.1_g046140 Hydrangea macrophylla HOM05D004361 ORTHO05D004706 5.7e-14 82.0 180 41.1
Phvul.007G051800 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 5.7e-14 82.0 180 40.0
Migut.M01277 Erythranthe guttata HOM05D004361 ORTHO05D004706 7.5e-14 81.6 205 38.0
Ciclev10016643m.g Citrus clementina HOM05D004361 ORTHO05D004706 9.8e-14 81.3 159 40.9
Hund21376 Selenicereus undatus HOM05D004361 ORTHO05D004706 9.8e-14 81.3 187 41.7
Lj5g0000713 Lotus japonicus HOM05D004361 ORTHO05D004706 1.7e-13 80.5 180 39.4
AUR62022017 Chenopodium quinoa HOM05D004361 ORTHO05D004706 2.2e-13 80.1 213 39.9
CsaV3_1G011080 Cucumis sativus L. HOM05D004361 ORTHO05D004706 2.2e-13 80.1 201 39.3
Lalb_Chr02g0144581 Lupinus albus HOM05D004361 ORTHO05D004706 2.2e-13 80.1 211 38.9
Medtr1g105555 Medicago truncatula HOM05D004361 ORTHO05D004706 2.2e-13 80.1 178 38.2
Sed0010653 Sechium edule HOM05D004361 ORTHO05D004706 2.2e-13 80.1 195 36.9
MELO3C002485.2 Cucumis melo HOM05D004361 ORTHO05D004706 4.9e-13 79.0 205 39.0
Nitab4.5_0006795g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 4.9e-13 79.0 191 35.6
Glyma.01G240500 Glycine max HOM05D004361 ORTHO05D004706 6.3e-13 78.6 183 38.8
Glyma.11G003100 Glycine max HOM05D004361 ORTHO05D004706 6.3e-13 78.6 197 39.1
CiPaw.10G068100 Carya illinoinensis HOM05D004361 ORTHO05D004706 1.1e-12 77.8 192 39.1
Rhsim02G0112300 Rhododendron simsii HOM05D004361 ORTHO05D004706 1.1e-12 77.8 184 38.6
TAR629G1557 Trochodendron aralioides HOM05D004361 ORTHO05D004706 1.4e-12 77.4 201 38.3
vmacro15833 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.4e-12 77.4 186 41.4
vmacro03710 Vaccinium macrocarpon HOM05D004361 ORTHO05D004706 1.8e-12 77.0 206 35.9
ClCG03G005000 Citrullus lanatus HOM05D004361 ORTHO05D004706 4.1e-12 75.9 195 39.0
Lsat_1_v5_gn_4_57760 Lactuca sativa HOM05D004361 ORTHO05D004706 5.4e-12 75.5 183 39.3
arahy.Tifrunner.gnm1.ann1.Y6FWJK Arachis hypogaea HOM05D004361 ORTHO05D004706 7.0e-12 75.1 164 42.1
Gohir.D10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 9.2e-12 74.7 201 35.3
Gorai.011G017100 Gossypium raimondii HOM05D004361 ORTHO05D004706 9.2e-12 74.7 201 35.3
MSTRG.7243 Avicennia marina HOM05D004361 ORTHO05D004706 2.0e-11 73.6 188 36.2
Sopen10g001370 Solanum pennellii HOM05D004361 ORTHO05D004706 2.0e-11 73.6 173 37.6
VMungo1215G1007 Vigna mungo HOM05D004361 ORTHO05D004706 2.0e-11 73.6 196 35.7
Phvul.002G049100 Phaseolus vulgaris HOM05D004361 ORTHO05D004706 2.7e-11 73.2 209 34.4
TAR626G1160 Trochodendron aralioides HOM05D004361 ORTHO05D004706 3.5e-11 72.8 181 37.6
Actinidia11836 Actinidia chinensis HOM05D004361 ORTHO05D004706 4.5e-11 72.4 191 41.9
Psat6g210400 Pisum sativum HOM05D004361 ORTHO05D004706 4.5e-11 72.4 178 41.6
Ah.14g088180 Amaranthus hybridus HOM05D004361 ORTHO05D004706 7.8e-11 71.6 193 39.9
Nitab4.5_0002847g0010 Nicotiana tabacum HOM05D004361 ORTHO05D004706 7.8e-11 71.6 163 40.5
Lj1g0002529 Lotus japonicus HOM05D004361 ORTHO05D004706 1.7e-10 70.5 181 37.6
arahy.Tifrunner.gnm1.ann1.QUZ1HU Arachis hypogaea HOM05D004361 ORTHO05D004706 2.3e-10 70.1 159 40.3
MSTRG.13161 Avicennia marina HOM05D004361 ORTHO05D004706 2.3e-10 70.1 204 32.8
Oeu002714.1 Olea europaea HOM05D004361 ORTHO05D004706 6.6e-10 68.6 190 36.3
ECA248G1765 Erigeron canadensis HOM05D004361 ORTHO05D004706 8.6e-10 68.2 178 35.4
Gohir.A10G015500 Gossypium hirsutum HOM05D004361 ORTHO05D004706 8.6e-10 68.2 201 35.8
Cc00_g17930 Coffea canephora HOM05D004361 ORTHO05D004706 1.1e-09 67.8 192 38.0
Medtr5g005560 Medicago truncatula HOM05D004361 ORTHO05D004706 1.5e-09 67.4 192 39.1
Hund23516 Selenicereus undatus HOM05D004361 ORTHO05D004706 1.5e-09 67.4 195 36.9
Sc17g0007070 Simmondsia chinensis HOM05D004361 ORTHO05D004706 3.3e-09 66.2 198 34.3
Peaxi162Scf00082g00177 Petunia axillaris HOM05D004361 ORTHO05D004706 5.6e-09 65.5 169 36.1
Psat4g215200 Pisum sativum HOM05D004361 ORTHO05D004706 7.3e-09 65.1 190 34.7
PGR004G2667 Punica granatum HOM05D004361 ORTHO05D004706 9.5e-09 64.7 208 37.5
DCAR_008122 Daucus carota HOM05D004361 ORTHO05D004706 3.6e-08 62.8 160 41.9
Oeu026856.1 Olea europaea HOM05D004361 ORTHO05D004706 3.6e-08 62.8 185 36.2
MBI02_g10098_MAGBIO Magnolia biondii HOM05D004361 ORTHO05D004706 8.0e-08 61.6 193 34.7
HanXRQChr11g0339041 Helianthus annuus HOM05D004361 ORTHO05D004706 1.0e-07 61.2 183 31.1
Nitab4.5_0001686g0040 Nicotiana tabacum HOM05D004361 ORTHO05D004706 1.0e-07 61.2 163 39.3
TPR.G5469 Trifolium pratense HOM05D004361 ORTHO05D004706 1.4e-07 60.8 182 33.5
Oeu030986.1 Olea europaea HOM05D004361 ORTHO05D004706 2.3e-07 60.1 63 54.0
TPR.G8297 Trifolium pratense HOM05D004361 ORTHO05D004706 4.0e-07 59.3 199 30.7
DCAR_004190 Daucus carota HOM05D004361 ORTHO05D004706 2.6e-06 56.6 160 38.1
HanXRQChr16g0516371 Helianthus annuus HOM05D004361 ORTHO05D004706 2.6e-06 56.6 182 33.0
EL10Ac8g19901 Beta vulgaris HOM05D004361 ORTHO05D004706 5.7e-06 55.5 182 36.8
Lalb_Chr16g0376351 Lupinus albus HOM05D004361 ORTHO05D004706 5.7e-06 55.5 186 36.6


User provided reference genes

Program Settings