Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 1.4e-73 279.6 148 100.0
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 1.4e-67 259.6 148 92.6
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 2.6e-64 248.8 148 89.2
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 7.4e-64 247.3 148 88.5
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 8.5e-60 233.8 150 88.0
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 1.6e-58 229.6 150 84.7
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 1.6e-58 229.6 150 84.7
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 2.7e-58 228.8 150 84.7
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 2.7e-58 228.8 150 84.7
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 1.4e-54 216.5 148 81.8
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 7.0e-54 214.2 148 80.4
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 2.7e-53 212.2 149 81.2
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 3.5e-53 211.8 148 79.7
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 3.5e-53 211.8 148 79.7
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 4.5e-53 211.5 148 78.4
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 4.5e-53 211.5 148 78.4
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 4.5e-53 211.5 148 78.4
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 1.3e-47 193.4 159 71.7
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 2.8e-39 165.6 156 66.0
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 2.8e-39 165.6 126 69.0
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 3.7e-39 165.2 103 86.4
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 3.7e-39 165.2 134 68.7
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 8.3e-39 164.1 139 66.2
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 1.8e-38 162.9 153 62.1
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.8e-38 162.9 135 63.7
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 2.4e-38 162.5 135 63.7
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 2.4e-38 162.5 125 67.2
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 2.4e-38 162.5 125 67.2
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 3.1e-38 162.2 153 62.1
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 4.1e-38 161.8 131 68.7
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 9.2e-38 160.6 124 68.5
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 9.2e-38 160.6 145 60.7
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 1.2e-37 160.2 140 62.9
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 1.2e-37 160.2 113 79.6
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 1.6e-37 159.8 133 63.2
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 3.5e-37 158.7 113 75.2
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 3.5e-37 158.7 123 69.1
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 3.5e-37 158.7 147 62.6
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 4.5e-37 158.3 147 63.3
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 4.5e-37 158.3 145 63.4
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 5.9e-37 157.9 126 65.9
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 1.0e-36 157.1 115 72.2
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 1.0e-36 157.1 138 63.0
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 2.3e-36 156.0 136 61.0
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 3.8e-36 155.2 126 65.9
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 3.8e-36 155.2 115 72.2
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 8.6e-36 154.1 135 64.4
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 8.6e-36 154.1 133 64.7
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 8.6e-36 154.1 130 63.8
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.1e-35 153.7 147 62.6
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 1.9e-35 152.9 133 63.9
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 2.5e-35 152.5 139 60.4
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 3.3e-35 152.1 147 61.9
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 5.6e-35 151.4 113 69.9
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 1.6e-34 149.8 139 64.0
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 2.1e-34 149.4 140 61.4
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 3.6e-34 148.7 119 68.1
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 4.7e-34 148.3 133 60.9
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 4.7e-34 148.3 111 67.6
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 6.1e-34 147.9 139 59.7
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 8.0e-34 147.5 128 63.3
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 8.0e-34 147.5 134 62.7
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.4e-33 146.7 155 54.8
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 1.4e-33 146.7 155 54.8
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 1.8e-33 146.4 108 69.4
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 2.3e-33 146.0 135 61.5
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 3.0e-33 145.6 125 64.0
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 5.2e-33 144.8 138 60.1
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 1.2e-32 143.7 126 62.7
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 2.0e-32 142.9 129 62.0
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 2.6e-32 142.5 120 66.7
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 4.4e-32 141.7 108 67.6
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 9.8e-32 140.6 93 79.6
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 9.8e-32 140.6 145 57.2
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 2.2e-31 139.4 141 55.3
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 2.9e-31 139.0 107 65.4
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 3.7e-31 138.7 101 69.3
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 4.9e-31 138.3 105 67.6
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 6.4e-31 137.9 104 65.4
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 1.1e-30 137.1 139 54.7
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 7.0e-30 134.4 107 63.6
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 2.7e-29 132.5 146 54.1
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 1.0e-28 130.6 68 94.1
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 1.0e-28 130.6 93 73.1
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 1.0e-28 130.6 127 60.6
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 3.0e-28 129.0 122 62.3
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 5.0e-28 128.3 127 59.8
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 6.6e-28 127.9 91 73.6
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 8.6e-28 127.5 117 60.7
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 1.1e-27 127.1 106 64.2
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 1.5e-27 126.7 104 60.6
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 2.5e-27 125.9 77 80.5
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 3.3e-27 125.6 129 58.1
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 5.6e-27 124.8 129 58.9
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 9.5e-27 124.0 127 58.3
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 1.6e-26 123.2 104 61.5
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 2.1e-26 122.9 113 60.2
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 2.1e-26 122.9 111 62.2
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 3.6e-26 122.1 93 64.5
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 3.6e-26 122.1 93 64.5
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 4.0e-25 118.6 89 68.5
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 6.8e-25 117.9 90 65.6
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 2.2e-23 112.8 121 49.6
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 2.2e-23 112.8 115 50.4
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 2.4e-22 109.4 83 67.5
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 5.4e-22 108.2 143 49.0
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 1.2e-21 107.1 116 56.0
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 3.5e-21 105.5 86 58.1
BcaB05g22557 Brassica carinata HOM05D002513 ORTHO05D002720 4.6e-21 105.1 91 71.4
AL1G14860 Arabidopsis lyrata HOM05D005385 ORTHO05D006768 1.7e-20 103.2 72 81.9
AL8G12210 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 1.7e-20 103.2 72 81.9
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 1.1e-19 100.5 120 43.3
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 5.6e-19 98.2 106 49.1
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 4.7e-18 95.1 79 58.2
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 8.1e-18 94.4 160 38.1
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 1.1e-17 94.0 71 69.0
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 3.1e-17 92.4 118 48.3
BolC3t16740H Brassica oleracea HOM05D005411 ORTHO05D006463 6.8e-17 91.3 68 70.6
C03p44770 Brassica napus HOM05D005411 ORTHO05D006463 8.9e-17 90.9 68 70.6
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 1.5e-16 90.1 79 55.7
BcaC01g04135 Brassica carinata HOM05D005411 ORTHO05D006463 1.7e-15 86.7 56 76.8
BcaB04g19162 Brassica carinata HOM05D005411 ORTHO05D006463 9.2e-14 80.9 75 69.3
Atru.chr9.2185 Acer truncatum HOM05D005411 ORTHO05D006463 7.8e-13 77.8 85 54.1
Hma1.2p1_0377F.1_g139290 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 1.3e-12 77.0 68 61.8
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 1.7e-12 76.6 67 53.7
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 1.7e-12 76.6 67 53.7
CSS0044618 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 3.9e-12 75.5 63 65.1
Oeu047371.1 Olea europaea HOM05D005411 ORTHO05D006463 2.5e-11 72.8 66 57.6
SHI07138 Sapria himalayana HOM05D005411 ORTHO05D006463 4.3e-11 72.0 69 55.1
Potri.003G127900 Populus trichocarpa HOM05D005411 ORTHO05D006463 5.6e-11 71.6 114 41.2
HPP92_001497 Vanilla planifolia HOM05D005411 ORTHO05D006463 1.4e-09 67.0 43 74.4
C07p11360 Brassica napus HOM05D001537 ORTHO05D021960 2.0e-08 63.2 84 45.2
BcaC08g44430 Brassica carinata HOM05D000522 ORTHO05D021960 9.9e-08 60.8 46 65.2
C06p18650 Brassica napus HOM05D000282 ORTHO05D021960 9.9e-08 60.8 46 65.2
Sabra17G0003100 Salix brachista HOM05D005411 ORTHO05D006463 8.4e-07 57.8 75 52.0
Sabra17G0003800 Salix brachista HOM05D005411 ORTHO05D006463 8.4e-07 57.8 75 52.0
Sabra18G0123000 Salix brachista HOM05D005411 ORTHO05D006463 3.2e-06 55.8 75 50.7


User provided reference genes

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